Wall clock time and date at job start Tue Mar 31 2020 10:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99877 * 2 1 4 4 C 1.50707 * 109.47131 * 275.00243 * 3 2 1 5 5 C 1.38421 * 122.53356 * 269.73610 * 4 3 2 6 6 C 1.33402 * 114.91564 * 179.76215 * 5 4 3 7 7 S 1.75887 * 109.59029 * 0.47846 * 6 5 4 8 8 C 1.33382 * 122.53912 * 90.02554 * 4 3 2 9 9 S 1.65598 * 120.00096 * 180.02562 * 2 1 3 10 10 O 1.42104 * 104.27721 * 333.92388 * 9 2 1 11 11 O 1.42102 * 104.27547 * 206.06991 * 9 2 1 12 12 C 1.81402 * 104.44974 * 89.99935 * 9 2 1 13 13 C 1.53001 * 109.46847 * 186.79437 * 12 9 2 14 14 C 1.50692 * 115.55168 * 299.55239 * 13 12 9 15 15 H 1.08008 * 120.00104 * 95.17132 * 14 13 12 16 16 C 1.37878 * 120.00303 * 275.16456 * 14 13 12 17 17 N 1.31516 * 119.99788 * 7.10904 * 16 14 13 18 18 Si 1.86798 * 120.00191 * 187.10611 * 16 14 13 19 19 H 1.48503 * 109.47025 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47281 * 300.00265 * 18 16 14 21 21 H 1.48502 * 109.47104 * 60.00433 * 18 16 14 22 22 C 1.53005 * 117.49734 * 85.22623 * 13 12 9 23 23 C 1.53002 * 117.49774 * 153.87977 * 13 12 9 24 24 H 1.09005 * 109.47032 * 270.00033 * 1 2 3 25 25 H 1.08997 * 109.47296 * 30.00055 * 1 2 3 26 26 H 1.09003 * 109.47139 * 150.00253 * 1 2 3 27 27 H 1.09001 * 109.47062 * 35.00136 * 3 2 1 28 28 H 1.09003 * 109.47472 * 155.00034 * 3 2 1 29 29 H 1.07991 * 122.54662 * 359.97438 * 5 4 3 30 30 H 1.07993 * 125.20217 * 180.20789 * 6 5 4 31 31 H 1.08002 * 125.20612 * 0.02562 * 8 4 3 32 32 H 1.08996 * 109.47134 * 66.79512 * 12 9 2 33 33 H 1.08996 * 109.46727 * 306.79306 * 12 9 2 34 34 H 0.96997 * 119.99776 * 355.43302 * 17 16 14 35 35 H 1.08999 * 117.49925 * 214.99982 * 22 13 12 36 36 H 1.09004 * 117.49895 * 0.02562 * 22 13 12 37 37 H 1.09008 * 117.49869 * 359.97438 * 23 13 12 38 38 H 1.08994 * 117.49776 * 144.96922 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3413 1.7657 -1.4155 5 6 3.4218 1.4343 -2.2146 6 6 3.3926 1.9537 -3.4430 7 16 1.9434 2.9317 -3.6354 8 6 1.4399 2.5628 -1.9911 9 16 2.2930 -1.4341 -0.0006 10 8 1.3970 -2.3564 0.6043 11 8 3.5395 -1.1193 0.6047 12 6 2.5193 -1.8253 -1.7574 13 6 3.1287 -3.2221 -1.8944 14 6 4.4780 -3.4085 -1.2500 15 1 4.5482 -3.8144 -0.2515 16 6 5.6231 -3.0613 -1.9349 17 7 5.5351 -2.4396 -3.0905 18 14 7.2995 -3.4738 -1.2216 19 1 8.3610 -2.9968 -2.1441 20 1 7.4541 -2.8077 0.0967 21 1 7.4163 -4.9442 -1.0500 22 6 2.1705 -4.4149 -1.8854 23 6 2.8517 -3.9898 -3.1886 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6501 2.0043 0.5895 28 1 3.1858 1.1178 0.4343 29 1 4.2258 0.8004 -1.8710 30 1 4.1459 1.8010 -4.2016 31 1 0.5390 2.9264 -1.5195 32 1 3.1865 -1.0918 -2.2100 33 1 1.5539 -1.7989 -2.2628 34 1 4.6662 -2.2842 -3.4926 35 1 2.5161 -5.3345 -1.4133 36 1 1.1059 -4.2045 -1.7823 37 1 2.2349 -3.5000 -3.9422 38 1 3.6456 -4.6294 -3.5740 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590740600.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:02 Heat of formation + Delta-G solvation = -32.769078 kcal Electronic energy + Delta-G solvation = -23275.304721 eV Core-core repulsion = 19950.806139 eV Total energy + Delta-G solvation = -3324.498582 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.61289 -38.91148 -38.07273 -36.93986 -36.40488 -34.04824 -31.07342 -29.98473 -28.75683 -27.07568 -25.81075 -23.88743 -23.18801 -21.67438 -20.13556 -19.60326 -18.83178 -18.60791 -18.46347 -17.26746 -17.12629 -16.27301 -15.99137 -15.66949 -15.62523 -15.05470 -14.73332 -14.57099 -14.17123 -13.89105 -13.80679 -13.57969 -13.56455 -13.21688 -13.12948 -13.09560 -12.98067 -12.69326 -12.46399 -12.37363 -12.30939 -12.11527 -11.95736 -11.79490 -11.49703 -10.60706 -10.54236 -10.37648 -9.91984 -9.75355 -9.32218 -8.62017 -6.39858 -0.63326 0.06525 0.75761 1.02598 1.50381 1.53938 1.57192 1.76182 2.06090 2.52328 2.88888 3.11608 3.14872 3.30383 3.69082 3.87761 4.02937 4.08579 4.11089 4.33035 4.36348 4.37442 4.50570 4.60432 4.64396 4.68861 4.78202 4.78841 4.91791 4.98090 4.98959 5.13552 5.23042 5.38322 5.41294 5.49312 5.66794 6.00346 6.14738 6.63872 7.42522 8.79252 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.006363 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.130374 B = 4399.337593 C = 5245.564818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.999 5.999 3 C 0.170 3.830 4 C -0.141 4.141 5 C -0.152 4.152 6 C -0.218 4.218 7 S 0.129 5.871 8 C -0.181 4.181 9 S 2.622 3.378 10 O -0.992 6.992 11 O -0.986 6.986 12 C -0.562 4.562 13 C -0.010 4.010 14 C -0.607 4.607 15 H 0.038 0.962 16 C 0.002 3.998 17 N -0.911 5.911 18 Si 1.089 2.911 19 H -0.274 1.274 20 H -0.281 1.281 21 H -0.269 1.269 22 C -0.182 4.182 23 C -0.157 4.157 24 H 0.067 0.933 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.130 0.870 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.165 0.835 31 H 0.201 0.799 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.271 0.729 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.862 12.590 -0.291 17.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.837 5.837 3 C 0.043 3.957 4 C -0.155 4.155 5 C -0.182 4.182 6 C -0.354 4.354 7 S 0.392 5.608 8 C -0.318 4.318 9 S 2.719 3.281 10 O -0.982 6.982 11 O -0.976 6.976 12 C -0.694 4.694 13 C -0.012 4.012 14 C -0.644 4.644 15 H 0.056 0.944 16 C -0.202 4.202 17 N -0.545 5.545 18 Si 0.912 3.088 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.194 1.194 22 C -0.219 4.219 23 C -0.196 4.196 24 H 0.086 0.914 25 H 0.123 0.877 26 H 0.085 0.915 27 H 0.148 0.852 28 H 0.100 0.900 29 H 0.130 0.870 30 H 0.182 0.818 31 H 0.218 0.782 32 H 0.137 0.863 33 H 0.145 0.855 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.603 13.192 -0.934 16.951 hybrid contribution -0.599 -1.271 0.510 1.495 sum -11.202 11.921 -0.423 16.364 Atomic orbital electron populations 1.21748 0.76696 1.04372 1.03282 1.57507 1.16120 1.20220 1.89856 1.20156 0.98276 0.85242 0.92035 1.19320 0.95517 1.01834 0.98866 1.20287 1.00318 1.02757 0.94881 1.25780 1.03569 1.05021 1.01009 1.83962 1.16070 1.48375 1.12405 1.25857 1.04363 1.03972 0.97569 1.04448 0.72682 0.72986 0.78020 1.93449 1.65610 1.63860 1.75286 1.93466 1.45690 1.83205 1.75282 1.30068 1.08309 1.06783 1.24238 1.18644 0.94960 0.86546 1.01019 1.21545 0.91378 1.48885 1.02603 0.94417 1.26774 1.05978 0.91991 0.95417 1.70830 1.28957 1.36430 1.18274 0.83305 0.72475 0.77405 0.75580 1.19923 1.20686 1.19371 1.23115 0.97512 0.99564 1.01717 1.22734 1.02008 1.04122 0.90752 0.91416 0.87676 0.91539 0.85242 0.90038 0.86965 0.81761 0.78221 0.86274 0.85469 0.91820 0.89884 0.88107 0.88818 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.75 10.22 127.77 1.31 3.05 16 2 N -1.00 -29.34 3.10 -543.21 -1.68 -31.02 16 3 C 0.17 4.41 5.89 85.64 0.50 4.91 16 4 C -0.14 -3.62 5.38 -20.92 -0.11 -3.73 16 5 C -0.15 -4.80 8.61 21.22 0.18 -4.62 16 6 C -0.22 -6.03 11.23 66.72 0.75 -5.28 16 7 S 0.13 2.59 23.34 -56.49 -1.32 1.27 16 8 C -0.18 -3.43 10.84 66.72 0.72 -2.71 16 9 S 2.62 109.62 5.01 -56.49 -0.28 109.34 16 10 O -0.99 -44.53 17.09 -127.65 -2.18 -46.71 16 11 O -0.99 -49.15 16.07 -127.65 -2.05 -51.20 16 12 C -0.56 -23.68 5.98 71.98 0.43 -23.25 16 13 C -0.01 -0.47 0.95 -52.93 -0.05 -0.52 16 14 C -0.61 -34.46 7.92 25.60 0.20 -34.25 16 15 H 0.04 2.25 7.82 -2.91 -0.02 2.22 16 16 C 0.00 0.10 5.39 84.65 0.46 0.56 16 17 N -0.91 -52.30 13.57 21.45 0.29 -52.01 16 18 Si 1.09 51.57 29.91 68.60 2.05 53.62 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 C -0.18 -7.88 9.95 30.62 0.30 -7.58 16 23 C -0.16 -6.99 8.74 30.62 0.27 -6.72 16 24 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.10 1.40 7.94 -2.39 -0.02 1.38 16 26 H 0.07 1.43 7.79 -2.39 -0.02 1.41 16 27 H 0.13 2.23 8.09 -2.39 -0.02 2.21 16 28 H 0.08 2.53 6.80 -2.39 -0.02 2.52 16 29 H 0.11 4.35 7.66 -2.92 -0.02 4.33 16 30 H 0.16 4.40 8.06 -2.91 -0.02 4.37 16 31 H 0.20 2.21 8.06 -2.91 -0.02 2.18 16 32 H 0.12 5.28 5.90 -2.39 -0.01 5.26 16 33 H 0.13 4.41 8.11 -2.39 -0.02 4.39 16 34 H 0.27 15.25 6.17 -92.71 -0.57 14.68 16 35 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 36 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 37 H 0.09 3.65 8.14 -2.38 -0.02 3.63 16 38 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -72.82 343.61 1.04 -71.78 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 1.25 Total: 25.07 kcal Atomic # 6 Polarization: -85.10 SS G_CDS: 4.96 Total: -80.14 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -1.39 Total: -83.03 kcal Atomic # 8 Polarization: -93.68 SS G_CDS: -4.23 Total: -97.91 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 2.05 Total: 53.62 kcal Atomic # 16 Polarization: 112.21 SS G_CDS: -1.60 Total: 110.60 kcal Total: -72.82 1.04 -71.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590740600.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.011 kcal (2) G-P(sol) polarization free energy of solvation -72.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds