Wall clock time and date at job start Tue Mar 31 2020 10:48:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08998 * 109.47365 * 2 1
4 4 N 1.46507 * 109.46693 * 239.99776 * 2 1 3
5 5 S 1.65595 * 119.99744 * 95.00781 * 4 2 1
6 6 O 1.42099 * 104.27485 * 181.06785 * 5 4 2
7 7 O 1.42103 * 104.27658 * 308.92033 * 5 4 2
8 8 C 1.81401 * 104.45459 * 64.99492 * 5 4 2
9 9 C 1.52996 * 109.47024 * 173.67892 * 8 5 4
10 10 C 1.50702 * 115.54953 * 65.19346 * 9 8 5
11 11 H 1.08001 * 119.99803 * 264.77755 * 10 9 8
12 12 C 1.37879 * 120.00099 * 84.77963 * 10 9 8
13 13 N 1.31514 * 119.99931 * 352.23341 * 12 10 9
14 14 Si 1.86800 * 119.99732 * 172.23155 * 12 10 9
15 15 H 1.48495 * 109.47208 * 60.00545 * 14 12 10
16 16 H 1.48503 * 109.46864 * 180.02562 * 14 12 10
17 17 H 1.48495 * 109.47221 * 299.99700 * 14 12 10
18 18 C 1.52994 * 117.49893 * 279.51660 * 9 8 5
19 19 C 1.53001 * 117.49715 * 210.85698 * 9 8 5
20 20 C 1.50698 * 109.46977 * 120.00265 * 2 1 3
21 21 C 1.38432 * 122.53618 * 259.73477 * 20 2 1
22 22 C 1.33396 * 114.91646 * 179.76259 * 21 20 2
23 23 S 1.75884 * 109.59494 * 0.47312 * 22 21 20
24 24 C 1.33392 * 122.54416 * 80.02223 * 20 2 1
25 25 H 1.09003 * 109.46612 * 59.99929 * 1 2 3
26 26 H 1.08996 * 109.46693 * 300.00175 * 1 2 3
27 27 H 1.08998 * 109.47365 * 179.97438 * 1 2 3
28 28 H 0.97002 * 120.00078 * 274.99903 * 4 2 1
29 29 H 1.09000 * 109.46571 * 293.67917 * 8 5 4
30 30 H 1.08999 * 109.46807 * 53.67494 * 8 5 4
31 31 H 0.97001 * 119.99614 * 185.02037 * 13 12 10
32 32 H 1.09000 * 117.49962 * 0.02562 * 18 9 8
33 33 H 1.09007 * 117.49555 * 145.02620 * 18 9 8
34 34 H 1.08998 * 117.50177 * 214.98412 * 19 9 8
35 35 H 1.08999 * 117.49909 * 359.97438 * 19 9 8
36 36 H 1.07992 * 122.54090 * 359.97438 * 21 20 2
37 37 H 1.08001 * 125.19927 * 180.21105 * 22 21 20
38 38 H 1.08001 * 125.20133 * 359.97438 * 24 20 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0183 -0.6907 -1.1962
5 16 2.4122 0.1771 -2.5505
6 8 2.8122 -0.8077 -3.4936
7 8 1.2752 0.9965 -2.7846
8 6 3.8314 1.1871 -2.0441
9 6 4.3921 1.9253 -3.2612
10 6 3.4748 2.9480 -3.8806
11 1 2.8528 2.6768 -4.7209
12 6 3.4295 4.2298 -3.3746
13 7 4.0676 4.5204 -2.2620
14 14 2.4618 5.5535 -4.2695
15 1 1.0350 5.1511 -4.3552
16 1 2.5716 6.8345 -3.5264
17 1 3.0103 5.7274 -5.6385
18 6 5.3139 1.1432 -4.1989
19 6 5.8933 2.2204 -3.2786
20 6 2.0323 -0.7105 1.2304
21 6 2.4766 -0.0323 2.3525
22 6 2.8829 -0.8117 3.3560
23 16 2.7234 -2.5009 2.8927
24 6 2.0878 -2.0403 1.3188
25 1 -0.3633 0.5139 -0.8900
26 1 -0.3632 0.5139 0.8900
27 1 -0.3634 -1.0276 -0.0005
28 1 2.1109 -1.6563 -1.1949
29 1 3.5127 1.9116 -1.2947
30 1 4.6032 0.5435 -1.6221
31 1 3.9769 5.4016 -1.8669
32 1 5.5206 0.1025 -3.9490
33 1 5.2571 1.3686 -5.2639
34 1 6.2175 3.1540 -3.7384
35 1 6.4814 1.8890 -2.4228
36 1 2.4898 1.0459 2.4123
37 1 3.2569 -0.4592 4.3059
38 1 1.7878 -2.7289 0.5427
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000590756905.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:48:38
Heat of formation + Delta-G solvation = -17.512643 kcal
Electronic energy + Delta-G solvation = -22558.172640 eV
Core-core repulsion = 19234.335626 eV
Total energy + Delta-G solvation = -3323.837013 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 315.075 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-38.92826 -36.75169 -36.24822 -35.18382 -34.86455 -32.04335 -29.90534 -28.94294
-28.17066 -25.45519 -24.81729 -21.89601 -21.20982 -19.81019 -18.91935 -18.77889
-17.84460 -16.60914 -16.47626 -16.25086 -15.08763 -14.84570 -14.59980 -14.22228
-13.92751 -13.79547 -13.34611 -13.07613 -12.90657 -12.75358 -12.44746 -12.01494
-11.88366 -11.82086 -11.42918 -11.30763 -11.22952 -11.08641 -10.99771 -10.90635
-10.64619 -10.57934 -10.45180 -10.11938 -9.76418 -9.31002 -8.96176 -8.91114
-8.56202 -8.49323 -8.08787 -6.14045 -4.24562 0.89070 1.08757 1.54746
1.86174 2.58345 3.32755 3.34562 3.41362 3.48368 4.37367 4.50943
4.72719 4.86371 5.01263 5.12160 5.16971 5.21069 5.24683 5.37680
5.46258 5.52847 5.78718 5.83929 5.94410 5.99489 6.08991 6.25534
6.28073 6.36851 6.42014 6.49885 6.61798 6.72547 6.98562 7.20870
7.28482 7.39274 7.80276 8.20590 8.80710 9.46548 10.93608
Molecular weight = 315.07amu
Principal moments of inertia in cm(-1)
A = 0.017073 B = 0.004358 C = 0.004257
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1639.600376 B = 6423.517534 C = 6575.191671
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.211 3.789
3 H 0.097 0.903
4 N -1.127 6.127
5 S 2.606 3.394
6 O -0.975 6.975
7 O -0.947 6.947
8 C -0.554 4.554
9 C 0.043 3.957
10 C -0.516 4.516
11 H 0.068 0.932
12 C 0.083 3.917
13 N -0.875 5.875
14 Si 0.890 3.110
15 H -0.269 1.269
16 H -0.286 1.286
17 H -0.274 1.274
18 C -0.208 4.208
19 C -0.141 4.141
20 C -0.100 4.100
21 C -0.124 4.124
22 C -0.210 4.210
23 S 0.085 5.915
24 C -0.203 4.203
25 H 0.080 0.920
26 H 0.064 0.936
27 H 0.057 0.943
28 H 0.407 0.593
29 H 0.132 0.868
30 H 0.099 0.901
31 H 0.263 0.737
32 H 0.074 0.926
33 H 0.086 0.914
34 H 0.086 0.914
35 H 0.066 0.934
36 H 0.146 0.854
37 H 0.164 0.836
38 H 0.164 0.836
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.611 -10.856 11.819 16.260
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.101 3.899
3 H 0.115 0.885
4 N -0.882 5.882
5 S 2.703 3.297
6 O -0.965 6.965
7 O -0.937 6.937
8 C -0.687 4.687
9 C 0.041 3.959
10 C -0.553 4.553
11 H 0.086 0.914
12 C -0.122 4.122
13 N -0.511 5.511
14 Si 0.717 3.283
15 H -0.194 1.194
16 H -0.211 1.211
17 H -0.199 1.199
18 C -0.246 4.246
19 C -0.180 4.180
20 C -0.114 4.114
21 C -0.155 4.155
22 C -0.346 4.346
23 S 0.349 5.651
24 C -0.339 4.339
25 H 0.099 0.901
26 H 0.083 0.917
27 H 0.076 0.924
28 H 0.240 0.760
29 H 0.151 0.849
30 H 0.117 0.883
31 H 0.073 0.927
32 H 0.093 0.907
33 H 0.105 0.895
34 H 0.104 0.896
35 H 0.084 0.916
36 H 0.164 0.836
37 H 0.182 0.818
38 H 0.181 0.819
Dipole moment (debyes) X Y Z Total
from point charges -2.718 -11.942 11.827 17.026
hybrid contribution -0.134 1.861 -0.344 1.897
sum -2.852 -10.082 11.483 15.544
Atomic orbital electron populations
1.22301 0.93980 1.02576 1.03486 1.19302 0.94520 0.95110 0.80979
0.88531 1.56185 1.82804 1.19004 1.30223 1.05205 0.77293 0.74480
0.72704 1.93503 1.84951 1.59140 1.58928 1.93540 1.47546 1.69739
1.82834 1.29973 1.16724 1.12074 1.09896 1.18274 0.90992 0.96147
0.90478 1.20483 1.23961 0.94036 1.16808 0.91403 1.24940 0.94348
0.98250 0.94660 1.69970 1.41054 1.21986 1.18049 0.86662 0.81099
0.80496 0.80052 1.19432 1.21137 1.19905 1.23196 1.08368 0.95451
0.97559 1.22549 0.97423 0.98338 0.99729 1.19143 1.02088 0.93172
0.97003 1.20152 1.01193 1.01675 0.92486 1.25572 1.09477 0.95532
1.03993 1.84209 1.63334 1.07625 1.09970 1.25352 1.08926 0.98734
1.00877 0.90072 0.91662 0.92356 0.76005 0.84945 0.88262 0.92689
0.90706 0.89532 0.89594 0.91556 0.83643 0.81806 0.81895
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.10 9.50 37.16 0.35 -1.74 16
2 C 0.21 2.86 2.97 -69.08 -0.21 2.65 16
3 H 0.10 1.36 7.24 -51.93 -0.38 0.98 16
4 N -1.13 -16.63 5.32 -5.88 -0.03 -16.66 16
5 S 2.61 51.80 5.11 -107.50 -0.55 51.25 16
6 O -0.97 -21.30 18.08 -57.54 -1.04 -22.34 16
7 O -0.95 -21.88 16.78 -57.54 -0.97 -22.85 16
8 C -0.55 -11.49 5.76 37.16 0.21 -11.28 16
9 C 0.04 1.05 1.32 -155.66 -0.21 0.85 16
10 C -0.52 -13.98 8.19 -34.44 -0.28 -14.26 16
11 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16
12 C 0.08 2.24 5.38 -17.82 -0.10 2.14 16
13 N -0.88 -23.74 12.98 55.43 0.72 -23.02 16
14 Si 0.89 21.14 29.55 -169.99 -5.02 16.12 16
15 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16
16 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16
18 C -0.21 -4.59 9.96 -26.70 -0.27 -4.86 16
19 C -0.14 -3.22 9.49 -26.69 -0.25 -3.47 16
20 C -0.10 -1.19 4.86 -106.25 -0.52 -1.70 16
21 C -0.12 -1.37 9.95 -41.20 -0.41 -1.78 16
22 C -0.21 -2.04 11.23 29.04 0.33 -1.71 16
23 S 0.09 0.81 23.34 -107.50 -2.51 -1.70 16
24 C -0.20 -2.17 10.30 29.04 0.30 -1.87 16
25 H 0.08 1.20 7.42 -51.93 -0.39 0.82 16
26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
28 H 0.41 5.08 7.41 -34.47 -0.26 4.82 16
29 H 0.13 2.82 7.64 -51.92 -0.40 2.42 16
30 H 0.10 1.78 8.09 -51.92 -0.42 1.36 16
31 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16
32 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16
33 H 0.09 1.88 8.14 -51.92 -0.42 1.46 16
34 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16
35 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16
36 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16
37 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16
38 H 0.16 1.49 7.26 -52.49 -0.38 1.11 16
LS Contribution 347.56 15.07 5.24 5.24
Total: -1.00 -31.98 347.56 -10.35 -42.33
By element:
Atomic # 1 Polarization: 13.80 SS G_CDS: -5.14 Total: 8.66 kcal
Atomic # 6 Polarization: -35.99 SS G_CDS: -1.04 Total: -37.03 kcal
Atomic # 7 Polarization: -40.37 SS G_CDS: 0.69 Total: -39.68 kcal
Atomic # 8 Polarization: -43.18 SS G_CDS: -2.01 Total: -45.19 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal
Atomic # 16 Polarization: 52.61 SS G_CDS: -3.06 Total: 49.55 kcal
Total LS contribution 5.24 Total: 5.24 kcal
Total: -31.98 -10.35 -42.33 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000590756905.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.818 kcal
(2) G-P(sol) polarization free energy of solvation -31.984 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.167 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.513 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds