Wall clock time and date at job start Tue Mar 31 2020 10:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47365 * 2 1 4 4 N 1.46507 * 109.46693 * 239.99776 * 2 1 3 5 5 S 1.65595 * 119.99744 * 95.00781 * 4 2 1 6 6 O 1.42099 * 104.27485 * 181.06785 * 5 4 2 7 7 O 1.42103 * 104.27658 * 308.92033 * 5 4 2 8 8 C 1.81401 * 104.45459 * 64.99492 * 5 4 2 9 9 C 1.52996 * 109.47024 * 173.67892 * 8 5 4 10 10 C 1.50702 * 115.54953 * 65.19346 * 9 8 5 11 11 H 1.08001 * 119.99803 * 264.77755 * 10 9 8 12 12 C 1.37879 * 120.00099 * 84.77963 * 10 9 8 13 13 N 1.31514 * 119.99931 * 352.23341 * 12 10 9 14 14 Si 1.86800 * 119.99732 * 172.23155 * 12 10 9 15 15 H 1.48495 * 109.47208 * 60.00545 * 14 12 10 16 16 H 1.48503 * 109.46864 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47221 * 299.99700 * 14 12 10 18 18 C 1.52994 * 117.49893 * 279.51660 * 9 8 5 19 19 C 1.53001 * 117.49715 * 210.85698 * 9 8 5 20 20 C 1.50698 * 109.46977 * 120.00265 * 2 1 3 21 21 C 1.38432 * 122.53618 * 259.73477 * 20 2 1 22 22 C 1.33396 * 114.91646 * 179.76259 * 21 20 2 23 23 S 1.75884 * 109.59494 * 0.47312 * 22 21 20 24 24 C 1.33392 * 122.54416 * 80.02223 * 20 2 1 25 25 H 1.09003 * 109.46612 * 59.99929 * 1 2 3 26 26 H 1.08996 * 109.46693 * 300.00175 * 1 2 3 27 27 H 1.08998 * 109.47365 * 179.97438 * 1 2 3 28 28 H 0.97002 * 120.00078 * 274.99903 * 4 2 1 29 29 H 1.09000 * 109.46571 * 293.67917 * 8 5 4 30 30 H 1.08999 * 109.46807 * 53.67494 * 8 5 4 31 31 H 0.97001 * 119.99614 * 185.02037 * 13 12 10 32 32 H 1.09000 * 117.49962 * 0.02562 * 18 9 8 33 33 H 1.09007 * 117.49555 * 145.02620 * 18 9 8 34 34 H 1.08998 * 117.50177 * 214.98412 * 19 9 8 35 35 H 1.08999 * 117.49909 * 359.97438 * 19 9 8 36 36 H 1.07992 * 122.54090 * 359.97438 * 21 20 2 37 37 H 1.08001 * 125.19927 * 180.21105 * 22 21 20 38 38 H 1.08001 * 125.20133 * 359.97438 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 16 2.4122 0.1771 -2.5505 6 8 2.8122 -0.8077 -3.4936 7 8 1.2752 0.9965 -2.7846 8 6 3.8314 1.1871 -2.0441 9 6 4.3921 1.9253 -3.2612 10 6 3.4748 2.9480 -3.8806 11 1 2.8528 2.6768 -4.7209 12 6 3.4295 4.2298 -3.3746 13 7 4.0676 4.5204 -2.2620 14 14 2.4618 5.5535 -4.2695 15 1 1.0350 5.1511 -4.3552 16 1 2.5716 6.8345 -3.5264 17 1 3.0103 5.7274 -5.6385 18 6 5.3139 1.1432 -4.1989 19 6 5.8933 2.2204 -3.2786 20 6 2.0323 -0.7105 1.2304 21 6 2.4766 -0.0323 2.3525 22 6 2.8829 -0.8117 3.3560 23 16 2.7234 -2.5009 2.8927 24 6 2.0878 -2.0403 1.3188 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 0.5139 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.1109 -1.6563 -1.1949 29 1 3.5127 1.9116 -1.2947 30 1 4.6032 0.5435 -1.6221 31 1 3.9769 5.4016 -1.8669 32 1 5.5206 0.1025 -3.9490 33 1 5.2571 1.3686 -5.2639 34 1 6.2175 3.1540 -3.7384 35 1 6.4814 1.8890 -2.4228 36 1 2.4898 1.0459 2.4123 37 1 3.2569 -0.4592 4.3059 38 1 1.7878 -2.7289 0.5427 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590756905.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:38 Heat of formation + Delta-G solvation = -17.512643 kcal Electronic energy + Delta-G solvation = -22558.172640 eV Core-core repulsion = 19234.335626 eV Total energy + Delta-G solvation = -3323.837013 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.92826 -36.75169 -36.24822 -35.18382 -34.86455 -32.04335 -29.90534 -28.94294 -28.17066 -25.45519 -24.81729 -21.89601 -21.20982 -19.81019 -18.91935 -18.77889 -17.84460 -16.60914 -16.47626 -16.25086 -15.08763 -14.84570 -14.59980 -14.22228 -13.92751 -13.79547 -13.34611 -13.07613 -12.90657 -12.75358 -12.44746 -12.01494 -11.88366 -11.82086 -11.42918 -11.30763 -11.22952 -11.08641 -10.99771 -10.90635 -10.64619 -10.57934 -10.45180 -10.11938 -9.76418 -9.31002 -8.96176 -8.91114 -8.56202 -8.49323 -8.08787 -6.14045 -4.24562 0.89070 1.08757 1.54746 1.86174 2.58345 3.32755 3.34562 3.41362 3.48368 4.37367 4.50943 4.72719 4.86371 5.01263 5.12160 5.16971 5.21069 5.24683 5.37680 5.46258 5.52847 5.78718 5.83929 5.94410 5.99489 6.08991 6.25534 6.28073 6.36851 6.42014 6.49885 6.61798 6.72547 6.98562 7.20870 7.28482 7.39274 7.80276 8.20590 8.80710 9.46548 10.93608 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.017073 B = 0.004358 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.600376 B = 6423.517534 C = 6575.191671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.211 3.789 3 H 0.097 0.903 4 N -1.127 6.127 5 S 2.606 3.394 6 O -0.975 6.975 7 O -0.947 6.947 8 C -0.554 4.554 9 C 0.043 3.957 10 C -0.516 4.516 11 H 0.068 0.932 12 C 0.083 3.917 13 N -0.875 5.875 14 Si 0.890 3.110 15 H -0.269 1.269 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.208 4.208 19 C -0.141 4.141 20 C -0.100 4.100 21 C -0.124 4.124 22 C -0.210 4.210 23 S 0.085 5.915 24 C -0.203 4.203 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.407 0.593 29 H 0.132 0.868 30 H 0.099 0.901 31 H 0.263 0.737 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.146 0.854 37 H 0.164 0.836 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 -10.856 11.819 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.101 3.899 3 H 0.115 0.885 4 N -0.882 5.882 5 S 2.703 3.297 6 O -0.965 6.965 7 O -0.937 6.937 8 C -0.687 4.687 9 C 0.041 3.959 10 C -0.553 4.553 11 H 0.086 0.914 12 C -0.122 4.122 13 N -0.511 5.511 14 Si 0.717 3.283 15 H -0.194 1.194 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.246 4.246 19 C -0.180 4.180 20 C -0.114 4.114 21 C -0.155 4.155 22 C -0.346 4.346 23 S 0.349 5.651 24 C -0.339 4.339 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.240 0.760 29 H 0.151 0.849 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.164 0.836 37 H 0.182 0.818 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.718 -11.942 11.827 17.026 hybrid contribution -0.134 1.861 -0.344 1.897 sum -2.852 -10.082 11.483 15.544 Atomic orbital electron populations 1.22301 0.93980 1.02576 1.03486 1.19302 0.94520 0.95110 0.80979 0.88531 1.56185 1.82804 1.19004 1.30223 1.05205 0.77293 0.74480 0.72704 1.93503 1.84951 1.59140 1.58928 1.93540 1.47546 1.69739 1.82834 1.29973 1.16724 1.12074 1.09896 1.18274 0.90992 0.96147 0.90478 1.20483 1.23961 0.94036 1.16808 0.91403 1.24940 0.94348 0.98250 0.94660 1.69970 1.41054 1.21986 1.18049 0.86662 0.81099 0.80496 0.80052 1.19432 1.21137 1.19905 1.23196 1.08368 0.95451 0.97559 1.22549 0.97423 0.98338 0.99729 1.19143 1.02088 0.93172 0.97003 1.20152 1.01193 1.01675 0.92486 1.25572 1.09477 0.95532 1.03993 1.84209 1.63334 1.07625 1.09970 1.25352 1.08926 0.98734 1.00877 0.90072 0.91662 0.92356 0.76005 0.84945 0.88262 0.92689 0.90706 0.89532 0.89594 0.91556 0.83643 0.81806 0.81895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.50 37.16 0.35 -1.74 16 2 C 0.21 2.86 2.97 -69.08 -0.21 2.65 16 3 H 0.10 1.36 7.24 -51.93 -0.38 0.98 16 4 N -1.13 -16.63 5.32 -5.88 -0.03 -16.66 16 5 S 2.61 51.80 5.11 -107.50 -0.55 51.25 16 6 O -0.97 -21.30 18.08 -57.54 -1.04 -22.34 16 7 O -0.95 -21.88 16.78 -57.54 -0.97 -22.85 16 8 C -0.55 -11.49 5.76 37.16 0.21 -11.28 16 9 C 0.04 1.05 1.32 -155.66 -0.21 0.85 16 10 C -0.52 -13.98 8.19 -34.44 -0.28 -14.26 16 11 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 12 C 0.08 2.24 5.38 -17.82 -0.10 2.14 16 13 N -0.88 -23.74 12.98 55.43 0.72 -23.02 16 14 Si 0.89 21.14 29.55 -169.99 -5.02 16.12 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 C -0.21 -4.59 9.96 -26.70 -0.27 -4.86 16 19 C -0.14 -3.22 9.49 -26.69 -0.25 -3.47 16 20 C -0.10 -1.19 4.86 -106.25 -0.52 -1.70 16 21 C -0.12 -1.37 9.95 -41.20 -0.41 -1.78 16 22 C -0.21 -2.04 11.23 29.04 0.33 -1.71 16 23 S 0.09 0.81 23.34 -107.50 -2.51 -1.70 16 24 C -0.20 -2.17 10.30 29.04 0.30 -1.87 16 25 H 0.08 1.20 7.42 -51.93 -0.39 0.82 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.41 5.08 7.41 -34.47 -0.26 4.82 16 29 H 0.13 2.82 7.64 -51.92 -0.40 2.42 16 30 H 0.10 1.78 8.09 -51.92 -0.42 1.36 16 31 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 32 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.09 1.88 8.14 -51.92 -0.42 1.46 16 34 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.16 1.49 7.26 -52.49 -0.38 1.11 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -31.98 347.56 -10.35 -42.33 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.14 Total: 8.66 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: -1.04 Total: -37.03 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.69 Total: -39.68 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -2.01 Total: -45.19 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 52.61 SS G_CDS: -3.06 Total: 49.55 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.98 -10.35 -42.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590756905.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.818 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds