Wall clock time and date at job start Tue Mar 31 2020 10:48:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08998 * 109.47365 * 2 1
4 4 N 1.46507 * 109.46693 * 239.99776 * 2 1 3
5 5 S 1.65595 * 119.99744 * 95.00781 * 4 2 1
6 6 O 1.42099 * 104.27485 * 181.06785 * 5 4 2
7 7 O 1.42103 * 104.27658 * 308.92033 * 5 4 2
8 8 C 1.81401 * 104.45459 * 64.99492 * 5 4 2
9 9 C 1.52996 * 109.47024 * 173.67892 * 8 5 4
10 10 C 1.50702 * 115.54953 * 65.19346 * 9 8 5
11 11 H 1.08001 * 119.99803 * 264.77755 * 10 9 8
12 12 C 1.37879 * 120.00099 * 84.77963 * 10 9 8
13 13 N 1.31514 * 119.99931 * 352.23341 * 12 10 9
14 14 Si 1.86800 * 119.99732 * 172.23155 * 12 10 9
15 15 H 1.48495 * 109.47208 * 60.00545 * 14 12 10
16 16 H 1.48503 * 109.46864 * 180.02562 * 14 12 10
17 17 H 1.48495 * 109.47221 * 299.99700 * 14 12 10
18 18 C 1.52994 * 117.49893 * 279.51660 * 9 8 5
19 19 C 1.53001 * 117.49715 * 210.85698 * 9 8 5
20 20 C 1.50698 * 109.46977 * 120.00265 * 2 1 3
21 21 C 1.38432 * 122.53618 * 259.73477 * 20 2 1
22 22 C 1.33396 * 114.91646 * 179.76259 * 21 20 2
23 23 S 1.75884 * 109.59494 * 0.47312 * 22 21 20
24 24 C 1.33392 * 122.54416 * 80.02223 * 20 2 1
25 25 H 1.09003 * 109.46612 * 59.99929 * 1 2 3
26 26 H 1.08996 * 109.46693 * 300.00175 * 1 2 3
27 27 H 1.08998 * 109.47365 * 179.97438 * 1 2 3
28 28 H 0.97002 * 120.00078 * 274.99903 * 4 2 1
29 29 H 1.09000 * 109.46571 * 293.67917 * 8 5 4
30 30 H 1.08999 * 109.46807 * 53.67494 * 8 5 4
31 31 H 0.97001 * 119.99614 * 185.02037 * 13 12 10
32 32 H 1.09000 * 117.49962 * 0.02562 * 18 9 8
33 33 H 1.09007 * 117.49555 * 145.02620 * 18 9 8
34 34 H 1.08998 * 117.50177 * 214.98412 * 19 9 8
35 35 H 1.08999 * 117.49909 * 359.97438 * 19 9 8
36 36 H 1.07992 * 122.54090 * 359.97438 * 21 20 2
37 37 H 1.08001 * 125.19927 * 180.21105 * 22 21 20
38 38 H 1.08001 * 125.20133 * 359.97438 * 24 20 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0183 -0.6907 -1.1962
5 16 2.4122 0.1771 -2.5505
6 8 2.8122 -0.8077 -3.4936
7 8 1.2752 0.9965 -2.7846
8 6 3.8314 1.1871 -2.0441
9 6 4.3921 1.9253 -3.2612
10 6 3.4748 2.9480 -3.8806
11 1 2.8528 2.6768 -4.7209
12 6 3.4295 4.2298 -3.3746
13 7 4.0676 4.5204 -2.2620
14 14 2.4618 5.5535 -4.2695
15 1 1.0350 5.1511 -4.3552
16 1 2.5716 6.8345 -3.5264
17 1 3.0103 5.7274 -5.6385
18 6 5.3139 1.1432 -4.1989
19 6 5.8933 2.2204 -3.2786
20 6 2.0323 -0.7105 1.2304
21 6 2.4766 -0.0323 2.3525
22 6 2.8829 -0.8117 3.3560
23 16 2.7234 -2.5009 2.8927
24 6 2.0878 -2.0403 1.3188
25 1 -0.3633 0.5139 -0.8900
26 1 -0.3632 0.5139 0.8900
27 1 -0.3634 -1.0276 -0.0005
28 1 2.1109 -1.6563 -1.1949
29 1 3.5127 1.9116 -1.2947
30 1 4.6032 0.5435 -1.6221
31 1 3.9769 5.4016 -1.8669
32 1 5.5206 0.1025 -3.9490
33 1 5.2571 1.3686 -5.2639
34 1 6.2175 3.1540 -3.7384
35 1 6.4814 1.8890 -2.4228
36 1 2.4898 1.0459 2.4123
37 1 3.2569 -0.4592 4.3059
38 1 1.7878 -2.7289 0.5427
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000590756905.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:48:37
Heat of formation + Delta-G solvation = -38.302802 kcal
Electronic energy + Delta-G solvation = -22559.074169 eV
Core-core repulsion = 19234.335626 eV
Total energy + Delta-G solvation = -3324.738542 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 315.075 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-39.83936 -38.56283 -37.92358 -36.78791 -36.03043 -34.07272 -30.99210 -29.86854
-29.80149 -27.47609 -25.71250 -23.00549 -22.85528 -21.54923 -20.32915 -19.79430
-18.98848 -18.29037 -17.85699 -17.44619 -16.76744 -16.69362 -16.17428 -15.60740
-15.24673 -14.98048 -14.87515 -14.21956 -13.86322 -13.73843 -13.71914 -13.65893
-13.25660 -13.13139 -13.00574 -12.89940 -12.88277 -12.83586 -12.49888 -12.42752
-12.24304 -12.18904 -11.91242 -11.59298 -11.51422 -10.87316 -10.63251 -10.52979
-9.87954 -9.69400 -9.26551 -8.17908 -6.32555 -0.50527 0.11284 0.79049
1.08717 1.41072 1.42425 1.49725 1.69994 2.10437 2.41123 2.94515
3.09310 3.38199 3.46896 3.75465 3.94739 4.09186 4.16650 4.29730
4.36045 4.39169 4.52587 4.57832 4.60829 4.72768 4.84511 4.92478
4.97465 4.99089 5.21011 5.21585 5.33782 5.46111 5.47567 5.58502
5.58628 5.72871 6.14412 6.23680 6.73209 7.39665 8.89051
Molecular weight = 315.07amu
Principal moments of inertia in cm(-1)
A = 0.017073 B = 0.004358 C = 0.004257
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1639.600376 B = 6423.517534 C = 6575.191671
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.206 3.794
3 H 0.086 0.914
4 N -1.108 6.108
5 S 2.625 3.375
6 O -0.996 6.996
7 O -0.985 6.985
8 C -0.552 4.552
9 C 0.011 3.989
10 C -0.535 4.535
11 H 0.049 0.951
12 C 0.045 3.955
13 N -0.892 5.892
14 Si 0.934 3.066
15 H -0.276 1.276
16 H -0.274 1.274
17 H -0.269 1.269
18 C -0.198 4.198
19 C -0.138 4.138
20 C -0.111 4.111
21 C -0.145 4.145
22 C -0.208 4.208
23 S 0.115 5.885
24 C -0.211 4.211
25 H 0.055 0.945
26 H 0.082 0.918
27 H 0.072 0.928
28 H 0.420 0.580
29 H 0.123 0.877
30 H 0.129 0.871
31 H 0.266 0.734
32 H 0.097 0.903
33 H 0.082 0.918
34 H 0.066 0.934
35 H 0.086 0.914
36 H 0.149 0.851
37 H 0.186 0.814
38 H 0.176 0.824
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.263 -12.075 13.373 18.159
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.097 3.903
3 H 0.104 0.896
4 N -0.869 5.869
5 S 2.722 3.278
6 O -0.986 6.986
7 O -0.975 6.975
8 C -0.684 4.684
9 C 0.009 3.991
10 C -0.572 4.572
11 H 0.067 0.933
12 C -0.158 4.158
13 N -0.527 5.527
14 Si 0.759 3.241
15 H -0.202 1.202
16 H -0.199 1.199
17 H -0.194 1.194
18 C -0.235 4.235
19 C -0.178 4.178
20 C -0.125 4.125
21 C -0.175 4.175
22 C -0.344 4.344
23 S 0.378 5.622
24 C -0.347 4.347
25 H 0.074 0.926
26 H 0.100 0.900
27 H 0.091 0.909
28 H 0.257 0.743
29 H 0.142 0.858
30 H 0.147 0.853
31 H 0.075 0.925
32 H 0.116 0.884
33 H 0.101 0.899
34 H 0.085 0.915
35 H 0.105 0.895
36 H 0.167 0.833
37 H 0.204 0.796
38 H 0.194 0.806
Dipole moment (debyes) X Y Z Total
from point charges -2.358 -13.167 13.374 18.915
hybrid contribution -0.238 2.159 -0.761 2.301
sum -2.596 -11.008 12.613 16.941
Atomic orbital electron populations
1.22289 0.93507 1.03437 1.03051 1.19403 0.94991 0.94822 0.81113
0.89581 1.55670 1.82282 1.19421 1.29479 1.04357 0.76454 0.73900
0.73111 1.93463 1.85117 1.59432 1.60616 1.93495 1.48998 1.71016
1.83977 1.29870 1.17965 1.12297 1.08306 1.18417 0.91294 0.97029
0.92333 1.20655 1.24475 0.95394 1.16663 0.93309 1.25490 0.95308
0.99677 0.95320 1.70015 1.41754 1.22377 1.18598 0.85981 0.79560
0.79020 0.79529 1.20151 1.19864 1.19434 1.23244 1.06719 0.96381
0.97147 1.22503 0.96818 0.97916 1.00520 1.18979 1.03491 0.93596
0.96463 1.20257 1.02256 1.02186 0.92795 1.25897 1.08327 0.95655
1.04492 1.84152 1.62278 1.07105 1.08639 1.25606 1.08479 0.98614
1.02048 0.92628 0.89952 0.90853 0.74347 0.85829 0.85283 0.92501
0.88435 0.89908 0.91508 0.89513 0.83342 0.79627 0.80643
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.06 9.50 71.98 0.68 -3.37 16
2 C 0.21 5.40 2.97 44.24 0.13 5.53 16
3 H 0.09 2.43 7.24 -2.39 -0.02 2.41 16
4 N -1.11 -31.57 5.32 -172.51 -0.92 -32.48 16
5 S 2.62 103.80 5.11 -56.49 -0.29 103.51 16
6 O -1.00 -42.86 18.08 -127.65 -2.31 -45.17 16
7 O -0.99 -46.48 16.78 -127.65 -2.14 -48.63 16
8 C -0.55 -22.57 5.76 71.98 0.41 -22.15 16
9 C 0.01 0.55 1.32 -52.93 -0.07 0.48 16
10 C -0.53 -29.43 8.19 25.60 0.21 -29.22 16
11 H 0.05 2.79 7.83 -2.91 -0.02 2.77 16
12 C 0.05 2.45 5.38 84.66 0.46 2.91 16
13 N -0.89 -48.51 12.98 21.45 0.28 -48.24 16
14 Si 0.93 43.61 29.55 68.60 2.03 45.64 16
15 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16
16 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16
17 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16
18 C -0.20 -8.53 9.96 30.62 0.30 -8.22 16
19 C -0.14 -6.21 9.49 30.62 0.29 -5.92 16
20 C -0.11 -2.43 4.86 -20.92 -0.10 -2.54 16
21 C -0.14 -2.92 9.95 21.22 0.21 -2.71 16
22 C -0.21 -3.49 11.23 66.72 0.75 -2.74 16
23 S 0.11 1.86 23.34 -56.49 -1.32 0.54 16
24 C -0.21 -4.00 10.30 66.72 0.69 -3.32 16
25 H 0.05 1.66 7.42 -2.39 -0.02 1.65 16
26 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16
27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16
28 H 0.42 9.74 7.41 -96.74 -0.72 9.03 16
29 H 0.12 5.28 7.64 -2.39 -0.02 5.26 16
30 H 0.13 4.37 8.09 -2.39 -0.02 4.35 16
31 H 0.27 13.76 8.32 -92.71 -0.77 12.99 16
32 H 0.10 3.72 8.14 -2.39 -0.02 3.71 16
33 H 0.08 3.58 8.14 -2.38 -0.02 3.56 16
34 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16
35 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16
36 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16
37 H 0.19 2.17 8.06 -2.91 -0.02 2.15 16
38 H 0.18 2.74 7.26 -2.91 -0.02 2.72 16
Total: -1.00 -67.90 347.56 -0.35 -68.25
By element:
Atomic # 1 Polarization: 27.49 SS G_CDS: 0.35 Total: 27.84 kcal
Atomic # 6 Polarization: -75.23 SS G_CDS: 3.97 Total: -71.26 kcal
Atomic # 7 Polarization: -80.08 SS G_CDS: -0.64 Total: -80.72 kcal
Atomic # 8 Polarization: -89.35 SS G_CDS: -4.45 Total: -93.80 kcal
Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal
Atomic # 16 Polarization: 105.65 SS G_CDS: -1.61 Total: 104.04 kcal
Total: -67.90 -0.35 -68.25 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000590756905.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.952 kcal
(2) G-P(sol) polarization free energy of solvation -67.904 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.952 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.255 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.303 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds