Wall clock time and date at job start Tue Mar 31 2020 11:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00082 * 2 1 4 4 H 1.48501 * 109.46830 * 239.99985 * 3 2 1 5 5 H 1.48498 * 109.47219 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47527 * 119.99995 * 3 2 1 7 7 C 1.37881 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99723 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00211 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.63895 * 298.30517 * 9 7 2 11 11 C 1.55153 * 110.87126 * 175.06154 * 9 7 2 12 12 C 1.54917 * 101.58005 * 206.05919 * 11 9 7 13 13 N 1.47428 * 104.82831 * 37.01088 * 12 11 9 14 14 C 1.34779 * 125.64626 * 155.91931 * 13 12 11 15 15 O 1.21565 * 119.99949 * 354.29477 * 14 13 12 16 16 C 1.47725 * 120.00019 * 174.29289 * 14 13 12 17 17 C 1.39639 * 120.10104 * 7.01147 * 16 14 13 18 18 C 1.38075 * 119.89526 * 179.76780 * 17 16 14 19 19 F 1.35100 * 119.94730 * 180.22660 * 18 17 16 20 20 C 1.38780 * 120.10153 * 0.48813 * 18 17 16 21 21 F 1.35102 * 119.89505 * 179.76682 * 20 18 17 22 22 C 1.38783 * 120.20732 * 359.78549 * 20 18 17 23 23 F 1.35096 * 119.95375 * 179.97438 * 22 20 18 24 24 C 1.38072 * 120.09612 * 359.95565 * 22 20 18 25 25 C 1.47026 * 108.70382 * 335.86759 * 13 12 11 26 26 H 0.96998 * 119.99795 * 0.02562 * 1 2 3 27 27 H 0.96698 * 113.99423 * 61.69149 * 10 9 7 28 28 H 1.08997 * 111.00728 * 324.13031 * 11 9 7 29 29 H 1.09003 * 111.00563 * 87.95119 * 11 9 7 30 30 H 1.08999 * 110.36683 * 155.84656 * 12 11 9 31 31 H 1.08992 * 110.36487 * 278.05948 * 12 11 9 32 32 H 1.07999 * 120.04698 * 359.97438 * 17 16 14 33 33 H 1.08001 * 120.05090 * 180.02562 * 24 22 20 34 34 H 1.08998 * 109.87895 * 241.64605 * 25 13 12 35 35 H 1.08996 * 109.87947 * 120.48142 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.4496 -2.6181 1.1777 11 6 2.2256 -3.7001 -0.1236 12 6 1.3154 -4.7735 -0.7712 13 7 0.4618 -4.0263 -1.7127 14 6 -0.1449 -4.5406 -2.8008 15 8 0.0738 -5.6895 -3.1325 16 6 -1.0756 -3.7083 -3.5903 17 6 -1.2175 -2.3496 -3.3009 18 6 -2.0851 -1.5746 -4.0446 19 9 -2.2198 -0.2589 -3.7685 20 6 -2.8229 -2.1461 -5.0718 21 9 -3.6740 -1.3848 -5.7937 22 6 -2.6894 -3.4972 -5.3593 23 9 -3.4105 -4.0484 -6.3600 24 6 -1.8203 -4.2789 -4.6244 25 6 0.3811 -2.6274 -1.2676 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2285 -1.9339 1.2625 28 1 3.0655 -3.4561 -0.7741 29 1 2.5746 -4.0231 0.8572 30 1 1.9170 -5.5085 -1.3059 31 1 0.7066 -5.2631 -0.0112 32 1 -0.6471 -1.9051 -2.4988 33 1 -1.7167 -5.3302 -4.8491 34 1 -0.6527 -2.3714 -1.0354 35 1 0.7624 -1.9678 -2.0470 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842426.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:19 Heat of formation + Delta-G solvation = -164.917716 kcal Electronic energy + Delta-G solvation = -26815.501159 eV Core-core repulsion = 22365.218620 eV Total energy + Delta-G solvation = -4450.282540 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.81614 -49.17103 -48.47407 -40.34302 -38.24900 -37.32297 -34.47678 -32.44559 -31.70774 -30.68078 -29.76175 -28.05459 -25.72207 -24.37096 -23.35271 -22.29517 -20.19238 -19.72217 -18.22296 -17.91334 -17.79455 -17.23767 -16.82770 -16.39690 -15.90580 -15.52755 -15.47079 -15.18534 -15.05238 -14.92281 -14.73332 -14.45239 -14.27591 -13.60423 -13.22599 -13.18111 -12.94530 -12.59759 -12.16275 -11.88121 -11.82374 -11.74673 -11.61334 -11.10384 -10.80069 -10.76684 -10.57697 -10.37470 -9.92993 -9.45592 -9.05318 -9.03877 -8.84846 -8.48837 -8.20494 -6.48244 -4.56684 0.27549 0.68660 2.54124 3.06789 3.12620 3.19667 3.21324 3.34881 3.51344 4.05854 4.09858 4.13017 4.33150 4.41318 4.79584 4.88634 5.19869 5.34094 5.45806 5.53486 5.62677 5.69269 5.71302 5.77294 5.97384 6.03201 6.21095 6.36900 6.45909 6.58174 6.66044 6.82120 7.09454 7.55075 7.75336 7.89941 8.30406 8.48839 9.10346 9.19936 10.59677 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.005437 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.916726 B = 5148.923191 C = 6845.419628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.250 3.750 10 O -0.581 6.581 11 C -0.119 4.119 12 C 0.109 3.891 13 N -0.600 5.600 14 C 0.569 3.431 15 O -0.548 6.548 16 C -0.079 4.079 17 C -0.138 4.138 18 C 0.098 3.902 19 F -0.111 7.111 20 C 0.047 3.953 21 F -0.117 7.117 22 C 0.084 3.916 23 F -0.120 7.120 24 C -0.082 4.082 25 C 0.072 3.928 26 H 0.274 0.726 27 H 0.383 0.617 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.209 0.791 33 H 0.164 0.836 34 H 0.082 0.918 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.399 -3.787 -6.325 8.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.087 0.913 9 C 0.209 3.791 10 O -0.390 6.390 11 C -0.157 4.157 12 C -0.013 4.013 13 N -0.331 5.331 14 C 0.357 3.643 15 O -0.429 6.429 16 C -0.082 4.082 17 C -0.156 4.156 18 C 0.077 3.923 19 F -0.089 7.089 20 C 0.025 3.975 21 F -0.096 7.096 22 C 0.063 3.937 23 F -0.098 7.098 24 C -0.102 4.102 25 C -0.049 4.049 26 H 0.084 0.916 27 H 0.233 0.767 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.225 0.775 33 H 0.181 0.819 34 H 0.100 0.900 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.155 -4.744 -6.495 8.639 hybrid contribution -0.492 1.928 -0.529 2.059 sum -3.647 -2.815 -7.024 8.400 Atomic orbital electron populations 1.69628 1.05937 1.28487 1.49735 1.25049 0.95116 0.99781 0.93161 0.86451 0.79615 0.81925 0.78982 1.19966 1.20957 1.19897 1.21499 0.93905 0.89850 1.52416 0.91321 1.19502 0.86381 0.92445 0.80745 1.86163 1.51759 1.56519 1.44529 1.22796 0.97401 0.94858 1.00625 1.22297 0.92646 0.95131 0.91218 1.48654 1.47248 1.12904 1.24261 1.17474 0.80553 0.86156 0.80103 1.90752 1.64508 1.18010 1.69605 1.19645 0.98483 0.93162 0.96931 1.23481 0.97479 0.93555 1.01051 1.17267 0.99030 0.79910 0.96060 1.91614 1.94493 1.30245 1.92595 1.17886 0.95547 0.88740 0.95289 1.91552 1.67536 1.74734 1.75752 1.17058 0.96593 0.89267 0.90746 1.91558 1.75645 1.85112 1.57510 1.21160 0.93686 1.01760 0.93606 1.23671 1.02257 0.78726 1.00254 0.91615 0.76713 0.90238 0.90110 0.91071 0.91288 0.77519 0.81856 0.90035 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -20.77 10.96 55.43 0.61 -20.16 16 2 C 0.07 1.67 5.28 -17.82 -0.09 1.58 16 3 Si 0.90 18.73 29.54 -169.99 -5.02 13.71 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.54 -12.49 8.13 -34.44 -0.28 -12.77 16 8 H 0.07 1.59 7.78 -52.48 -0.41 1.18 16 9 C 0.25 5.27 0.85 -89.94 -0.08 5.20 16 10 O -0.58 -12.98 13.07 -35.23 -0.46 -13.44 16 11 C -0.12 -2.16 6.23 -24.58 -0.15 -2.31 16 12 C 0.11 1.87 6.93 -2.52 -0.02 1.86 16 13 N -0.60 -10.88 3.33 -176.25 -0.59 -11.47 16 14 C 0.57 10.12 7.80 -12.38 -0.10 10.02 16 15 O -0.55 -10.69 16.60 5.31 0.09 -10.60 16 16 C -0.08 -1.22 5.87 -104.98 -0.62 -1.84 16 17 C -0.14 -2.17 8.58 -39.12 -0.34 -2.51 16 18 C 0.10 1.50 7.29 -39.44 -0.29 1.21 16 19 F -0.11 -1.84 17.17 2.25 0.04 -1.80 16 20 C 0.05 0.68 7.32 -39.18 -0.29 0.39 16 21 F -0.12 -1.73 17.08 2.25 0.04 -1.69 16 22 C 0.08 1.13 7.29 -39.44 -0.29 0.84 16 23 F -0.12 -1.59 17.17 2.25 0.04 -1.55 16 24 C -0.08 -1.12 9.56 -39.12 -0.37 -1.50 16 25 C 0.07 1.40 3.23 -3.07 -0.01 1.39 16 26 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 27 H 0.38 8.64 7.44 45.56 0.34 8.97 16 28 H 0.08 1.38 8.04 -51.93 -0.42 0.97 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.07 1.15 7.99 -51.93 -0.41 0.73 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.21 3.60 2.73 -58.40 -0.16 3.44 16 33 H 0.16 2.04 7.66 -52.49 -0.40 1.64 16 34 H 0.08 1.63 6.51 -51.93 -0.34 1.29 16 35 H 0.08 1.64 6.41 -51.93 -0.33 1.30 16 LS Contribution 309.80 15.07 4.67 4.67 Total: -1.00 -24.20 309.80 -5.62 -29.82 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -2.11 Total: 10.95 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.92 Total: 1.57 kcal Atomic # 7 Polarization: -31.65 SS G_CDS: 0.02 Total: -31.62 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.37 Total: -24.05 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.12 Total: -5.04 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -24.20 -5.62 -29.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842426.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.102 kcal (2) G-P(sol) polarization free energy of solvation -24.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds