Wall clock time and date at job start Tue Mar 31 2020 11:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00133 * 2 1 4 4 H 1.48503 * 109.47176 * 269.99402 * 3 2 1 5 5 H 1.48498 * 109.47364 * 29.99708 * 3 2 1 6 6 H 1.48502 * 109.47167 * 149.99827 * 3 2 1 7 7 C 1.37883 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99976 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.64037 * 56.86080 * 9 7 2 11 11 C 1.55158 * 110.71823 * 180.02562 * 9 7 2 12 12 C 1.54906 * 101.61450 * 154.02398 * 11 9 7 13 13 N 1.47464 * 104.81326 * 323.04222 * 12 11 9 14 14 C 1.34779 * 125.63131 * 204.04599 * 13 12 11 15 15 O 1.21587 * 120.00315 * 174.72571 * 14 13 12 16 16 C 1.47578 * 119.99879 * 354.72870 * 14 13 12 17 17 C 1.39734 * 120.13523 * 323.60610 * 16 14 13 18 18 C 1.37751 * 119.94575 * 179.76843 * 17 16 14 19 19 C 1.38712 * 120.21439 * 0.50480 * 18 17 16 20 20 F 1.35096 * 119.86609 * 179.72215 * 19 18 17 21 21 C 1.38664 * 120.26402 * 359.74519 * 19 18 17 22 22 F 1.35098 * 119.97088 * 179.97438 * 21 19 18 23 23 C 1.38382 * 120.05580 * 359.97438 * 21 19 18 24 24 F 1.35095 * 120.10652 * 180.02562 * 23 21 19 25 25 C 1.47023 * 108.72301 * 24.07174 * 13 12 11 26 26 H 0.97002 * 120.00145 * 0.02562 * 1 2 3 27 27 H 0.96701 * 114.00029 * 303.14020 * 10 9 7 28 28 H 1.08994 * 111.00368 * 272.11571 * 11 9 7 29 29 H 1.09004 * 111.00512 * 35.93474 * 11 9 7 30 30 H 1.09007 * 110.36820 * 81.85158 * 12 11 9 31 31 H 1.09001 * 110.36644 * 204.17087 * 12 11 9 32 32 H 1.08001 * 120.02268 * 359.97438 * 17 16 14 33 33 H 1.08001 * 119.89078 * 180.25300 * 18 17 16 34 34 H 1.09003 * 109.88114 * 239.55739 * 25 13 12 35 35 H 1.08997 * 110.01290 * 118.46087 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.3663 -2.5701 -1.1195 11 6 2.2332 -3.7003 0.0018 12 6 1.3742 -4.8049 0.6662 13 7 0.5890 -4.1025 1.6981 14 6 0.0628 -4.6661 2.8034 15 8 -0.4867 -3.9722 3.6370 16 6 0.1535 -6.1257 3.0021 17 6 0.0447 -6.9904 1.9098 18 6 0.1347 -8.3519 2.0991 19 6 0.3227 -8.8687 3.3725 20 9 0.4043 -10.2054 3.5508 21 6 0.4265 -8.0190 4.4633 22 9 0.6090 -8.5288 5.7010 23 6 0.3435 -6.6492 4.2852 24 9 0.4451 -5.8203 5.3471 25 6 0.4748 -2.6860 1.3213 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2682 -1.8419 -1.1663 28 1 2.5104 -3.9793 -1.0147 29 1 3.1179 -3.4808 0.5996 30 1 0.7114 -5.2632 -0.0679 31 1 2.0142 -5.5594 1.1238 32 1 -0.1064 -6.5914 0.9177 33 1 0.0547 -9.0192 1.2537 34 1 0.9106 -2.0591 2.0992 35 1 -0.5727 -2.4219 1.1761 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:49 Heat of formation + Delta-G solvation = -181.498146 kcal Electronic energy + Delta-G solvation = -26365.108455 eV Core-core repulsion = 21914.106934 eV Total energy + Delta-G solvation = -4451.001521 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.99049 -49.38151 -48.63789 -40.15184 -38.42412 -37.22794 -34.50273 -32.24923 -31.39716 -30.94165 -29.98862 -27.96233 -25.62137 -24.21226 -23.45411 -22.54689 -20.07111 -19.57595 -18.49445 -18.19668 -17.77319 -17.31114 -17.01888 -16.34318 -16.07449 -15.76477 -15.56408 -15.27165 -15.10648 -14.87574 -14.75302 -14.54509 -14.28214 -13.61503 -13.34749 -13.08323 -12.92594 -12.44704 -12.36198 -12.22679 -12.04067 -11.66841 -11.53439 -11.13360 -10.91836 -10.76458 -10.55285 -10.27341 -9.77115 -9.46221 -9.25202 -9.20875 -8.74687 -8.43430 -8.10654 -6.37639 -4.46294 0.14855 0.42333 2.47763 2.90389 3.16315 3.20904 3.24920 3.27205 3.36398 3.84747 3.90685 4.15125 4.19241 4.22856 4.48551 4.89288 5.02816 5.20671 5.24401 5.39600 5.42314 5.56072 5.59172 5.69840 5.85091 6.00541 6.21922 6.34921 6.62223 6.71041 6.76623 7.14719 7.23693 7.65372 7.86770 7.95124 8.39380 8.57372 9.22323 9.33255 10.70284 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.026704 B = 0.003491 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.285609 B = 8019.198271 C = 8575.501639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.586 6.586 11 C -0.118 4.118 12 C 0.094 3.906 13 N -0.599 5.599 14 C 0.561 3.439 15 O -0.528 6.528 16 C -0.137 4.137 17 C -0.041 4.041 18 C -0.140 4.140 19 C 0.114 3.886 20 F -0.118 7.118 21 C 0.023 3.977 22 F -0.116 7.116 23 C 0.148 3.852 24 F -0.099 7.099 25 C 0.100 3.900 26 H 0.272 0.728 27 H 0.387 0.613 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.070 0.930 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.931 -16.006 1.873 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.396 6.396 11 C -0.156 4.156 12 C -0.028 4.028 13 N -0.331 5.331 14 C 0.348 3.652 15 O -0.406 6.406 16 C -0.141 4.141 17 C -0.060 4.060 18 C -0.159 4.159 19 C 0.093 3.907 20 F -0.096 7.096 21 C 0.002 3.998 22 F -0.094 7.094 23 C 0.127 3.873 24 F -0.077 7.077 25 C -0.021 4.021 26 H 0.082 0.918 27 H 0.239 0.761 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.180 0.820 33 H 0.178 0.822 34 H 0.088 0.912 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.799 -16.084 2.361 16.276 hybrid contribution 0.113 1.168 0.724 1.379 sum 0.912 -14.916 3.085 15.259 Atomic orbital electron populations 1.69556 1.06051 1.28149 1.49774 1.25071 0.95060 0.99872 0.93187 0.86374 0.79820 0.82262 0.78328 1.20318 1.20939 1.19656 1.21520 0.93782 0.90036 1.52407 0.91386 1.19469 0.85823 0.92223 0.81593 1.86064 1.51474 1.53487 1.48594 1.22782 0.97734 0.94639 1.00454 1.22576 0.94008 0.96113 0.90132 1.48690 1.51162 1.12636 1.20634 1.17363 0.80432 0.85582 0.81839 1.90844 1.44333 1.62874 1.42505 1.20214 1.05978 0.96189 0.91718 1.21448 0.93635 0.91527 0.99379 1.21100 1.03189 0.96285 0.95355 1.17538 1.02765 0.77509 0.92900 1.91571 1.93293 1.28708 1.96018 1.17381 1.11298 0.90118 0.81019 1.91569 1.93035 1.86874 1.37937 1.17300 1.00300 0.85371 0.84350 1.91642 1.92385 1.70423 1.53284 1.23174 1.02065 0.76960 0.99857 0.91794 0.76054 0.90158 0.90342 0.91169 0.91570 0.81988 0.82184 0.91152 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.90 10.98 55.43 0.61 -22.29 16 2 C 0.07 1.79 5.28 -17.82 -0.09 1.69 16 3 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.54 -13.41 8.11 -34.44 -0.28 -13.69 16 8 H 0.07 1.67 7.76 -52.49 -0.41 1.26 16 9 C 0.25 5.61 0.86 -89.94 -0.08 5.53 16 10 O -0.59 -13.70 13.09 -35.23 -0.46 -14.17 16 11 C -0.12 -2.12 6.22 -24.58 -0.15 -2.27 16 12 C 0.09 1.42 5.20 -2.51 -0.01 1.41 16 13 N -0.60 -11.24 3.33 -171.70 -0.57 -11.81 16 14 C 0.56 10.56 7.39 -12.45 -0.09 10.46 16 15 O -0.53 -12.04 16.45 5.29 0.09 -11.96 16 16 C -0.14 -1.95 5.42 -104.92 -0.57 -2.52 16 17 C -0.04 -0.42 8.17 -39.20 -0.32 -0.74 16 18 C -0.14 -1.16 10.00 -39.58 -0.40 -1.56 16 19 C 0.11 1.17 7.31 -39.25 -0.29 0.88 16 20 F -0.12 -1.22 17.17 2.25 0.04 -1.18 16 21 C 0.02 0.29 7.30 -39.37 -0.29 0.00 16 22 F -0.12 -1.53 17.09 2.25 0.04 -1.50 16 23 C 0.15 2.14 7.25 -38.92 -0.28 1.86 16 24 F -0.10 -1.68 16.05 2.25 0.04 -1.65 16 25 C 0.10 2.27 5.54 -3.06 -0.02 2.25 16 26 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 27 H 0.39 9.47 6.98 45.56 0.32 9.79 16 28 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.08 1.37 8.03 -51.93 -0.42 0.96 16 30 H 0.07 0.94 6.90 -51.92 -0.36 0.58 16 31 H 0.07 0.81 7.27 -51.93 -0.38 0.43 16 32 H 0.16 1.46 5.74 -52.49 -0.30 1.15 16 33 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.07 1.76 7.82 -51.93 -0.41 1.35 16 35 H 0.07 1.69 8.07 -51.93 -0.42 1.27 16 LS Contribution 312.13 15.07 4.70 4.70 Total: -1.00 -28.54 312.13 -5.76 -34.30 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -2.35 Total: 7.43 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -2.87 Total: 3.31 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.04 Total: -34.09 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.37 Total: -26.12 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.11 Total: -4.32 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.54 -5.76 -34.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.197 kcal (2) G-P(sol) polarization free energy of solvation -28.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds