Wall clock time and date at job start Tue Mar 31 2020 11:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00022 * 2 1 4 4 H 1.48499 * 109.47631 * 270.00127 * 3 2 1 5 5 H 1.48503 * 109.46987 * 30.00191 * 3 2 1 6 6 H 1.48501 * 109.47183 * 150.00097 * 3 2 1 7 7 C 1.37879 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00349 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99743 * 359.97438 * 7 2 1 10 10 O 1.42893 * 110.88714 * 300.70266 * 9 7 2 11 11 C 1.55156 * 111.00277 * 176.82006 * 9 7 2 12 12 C 1.54426 * 102.89410 * 206.40926 * 11 9 7 13 13 N 1.47019 * 107.28537 * 22.18612 * 12 11 9 14 14 C 1.34776 * 125.65153 * 181.02553 * 13 12 11 15 15 O 1.21586 * 119.99979 * 174.73313 * 14 13 12 16 16 C 1.47575 * 119.99863 * 354.74045 * 14 13 12 17 17 C 1.39743 * 120.12965 * 315.67864 * 16 14 13 18 18 C 1.37756 * 119.93978 * 179.72575 * 17 16 14 19 19 C 1.38715 * 120.21505 * 0.55312 * 18 17 16 20 20 F 1.35100 * 119.86761 * 179.69855 * 19 18 17 21 21 C 1.38665 * 120.26456 * 359.72539 * 19 18 17 22 22 F 1.35097 * 119.96936 * 180.02562 * 21 19 18 23 23 C 1.38385 * 120.05703 * 359.97438 * 21 19 18 24 24 F 1.35098 * 120.10811 * 180.02562 * 23 21 19 25 25 C 1.47424 * 108.69934 * 1.06009 * 13 12 11 26 26 H 0.97002 * 119.99952 * 359.97438 * 1 2 3 27 27 H 0.96700 * 114.00388 * 59.30474 * 10 9 7 28 28 H 1.08998 * 110.72349 * 324.74708 * 11 9 7 29 29 H 1.08994 * 110.72057 * 88.02359 * 11 9 7 30 30 H 1.09009 * 109.87655 * 262.76299 * 12 11 9 31 31 H 1.09000 * 110.00854 * 141.67992 * 12 11 9 32 32 H 1.08002 * 120.02893 * 0.02562 * 17 16 14 33 33 H 1.07996 * 119.89026 * 180.28270 * 18 17 16 34 34 H 1.08998 * 110.36961 * 217.03359 * 25 13 12 35 35 H 1.09008 * 110.36512 * 94.71164 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4064 -2.5998 1.1477 11 6 2.2254 -3.7039 -0.0815 12 6 1.3622 -4.8015 -0.7410 13 7 0.2744 -4.1264 -1.4638 14 6 -0.7069 -4.7381 -2.1561 15 8 -1.6113 -4.0827 -2.6367 16 6 -0.6838 -6.2033 -2.3307 17 6 0.5069 -6.8504 -2.6717 18 6 0.5253 -8.2189 -2.8281 19 6 -0.6374 -8.9565 -2.6595 20 9 -0.6127 -10.2976 -2.8207 21 6 -1.8250 -8.3227 -2.3268 22 9 -2.9537 -9.0469 -2.1636 23 6 -1.8548 -6.9492 -2.1608 24 9 -3.0112 -6.3307 -1.8362 25 6 0.4353 -2.6694 -1.3065 26 1 -0.4850 0.8401 0.0004 27 1 -0.2523 -1.8949 1.2145 28 1 3.0857 -3.4628 -0.7058 29 1 2.5442 -4.0097 0.9149 30 1 0.9475 -5.4570 0.0249 31 1 1.9661 -5.3822 -1.4383 32 1 1.4130 -6.2786 -2.8076 33 1 1.4469 -8.7186 -3.0872 34 1 -0.5381 -2.1883 -1.2111 35 1 0.9831 -2.2547 -2.1527 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:51 Heat of formation + Delta-G solvation = -180.681931 kcal Electronic energy + Delta-G solvation = -26417.719216 eV Core-core repulsion = 21966.753089 eV Total energy + Delta-G solvation = -4450.966127 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.97570 -49.36782 -48.62410 -40.11088 -38.41858 -37.17660 -34.42574 -32.26137 -31.38302 -30.94305 -30.02708 -27.92444 -25.60819 -24.18865 -23.47020 -22.50563 -19.94304 -19.66468 -18.51426 -18.19949 -17.76597 -17.20401 -17.01922 -16.47975 -16.05192 -15.67660 -15.44834 -15.15753 -15.08169 -14.98732 -14.67159 -14.56435 -14.41926 -13.63706 -13.37679 -13.14277 -12.93144 -12.41817 -12.26907 -12.13401 -11.98202 -11.68547 -11.57054 -11.10526 -10.87515 -10.70688 -10.55171 -10.27421 -9.76007 -9.47849 -9.24564 -9.19615 -8.76319 -8.47895 -7.96224 -6.35089 -4.45446 0.18219 0.43283 2.50056 2.89731 3.15741 3.17962 3.24799 3.26845 3.40250 3.85865 3.92003 4.15526 4.19151 4.23195 4.51076 4.91305 5.04666 5.23336 5.25933 5.33322 5.42342 5.56245 5.59538 5.69610 5.92308 6.03526 6.22634 6.38077 6.60302 6.71868 6.79056 7.13960 7.24495 7.67113 7.91136 7.96358 8.41515 8.58632 9.23873 9.33909 10.72110 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.028694 B = 0.003483 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.581413 B = 8037.163061 C = 8514.446032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.118 4.118 12 C 0.097 3.903 13 N -0.598 5.598 14 C 0.564 3.436 15 O -0.527 6.527 16 C -0.133 4.133 17 C -0.042 4.042 18 C -0.139 4.139 19 C 0.111 3.889 20 F -0.118 7.118 21 C 0.026 3.974 22 F -0.115 7.115 23 C 0.146 3.854 24 F -0.101 7.101 25 C 0.092 3.908 26 H 0.272 0.728 27 H 0.385 0.615 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.088 0.912 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.979 -15.428 -4.822 16.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.579 4.579 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.155 4.155 12 C -0.025 4.025 13 N -0.330 5.330 14 C 0.350 3.650 15 O -0.404 6.404 16 C -0.137 4.137 17 C -0.061 4.061 18 C -0.158 4.158 19 C 0.091 3.909 20 F -0.096 7.096 21 C 0.004 3.996 22 F -0.094 7.094 23 C 0.125 3.875 24 F -0.078 7.078 25 C -0.028 4.028 26 H 0.082 0.918 27 H 0.236 0.764 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.178 0.822 33 H 0.178 0.822 34 H 0.106 0.894 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.550 -15.550 -4.982 16.527 hybrid contribution -0.433 1.034 -0.101 1.126 sum 2.117 -14.516 -5.083 15.525 Atomic orbital electron populations 1.69646 1.06038 1.28117 1.49333 1.25086 0.95032 0.99842 0.93223 0.86387 0.79792 0.82338 0.78308 1.20383 1.20965 1.19655 1.21466 0.93697 0.89971 1.52722 0.91387 1.19607 0.86151 0.91764 0.81634 1.86086 1.51497 1.55068 1.46592 1.22656 0.97658 0.94819 1.00410 1.22254 0.88781 0.96429 0.95078 1.48659 1.25543 1.10186 1.48578 1.17336 0.82242 0.85352 0.80120 1.90843 1.34335 1.65619 1.49649 1.20227 0.92594 0.95692 1.05211 1.21303 0.97236 0.93411 0.94136 1.21077 0.97476 0.93962 1.03288 1.17516 0.92917 0.78163 1.02324 1.91571 1.96964 1.28388 1.92695 1.17385 0.83601 0.88252 1.10324 1.91570 1.47854 1.76583 1.93375 1.17294 0.82954 0.87836 0.99456 1.91642 1.45126 1.82147 1.88927 1.23421 1.03096 0.75733 1.00581 0.91824 0.76427 0.90168 0.90452 0.91851 0.92246 0.82166 0.82235 0.89379 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.09 10.69 55.43 0.59 -22.50 16 2 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 3 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.54 -13.33 8.26 -34.44 -0.28 -13.61 16 8 H 0.07 1.63 7.78 -52.49 -0.41 1.22 16 9 C 0.25 5.67 0.88 -89.62 -0.08 5.59 16 10 O -0.58 -14.33 13.17 -35.23 -0.46 -14.80 16 11 C -0.12 -2.10 6.13 -24.84 -0.15 -2.25 16 12 C 0.10 1.50 5.91 -3.01 -0.02 1.48 16 13 N -0.60 -11.33 3.33 -171.66 -0.57 -11.90 16 14 C 0.56 10.73 7.22 -12.45 -0.09 10.65 16 15 O -0.53 -12.17 16.67 5.29 0.09 -12.08 16 16 C -0.13 -1.93 5.40 -104.92 -0.57 -2.50 16 17 C -0.04 -0.43 8.42 -39.20 -0.33 -0.76 16 18 C -0.14 -1.14 10.00 -39.58 -0.40 -1.54 16 19 C 0.11 1.16 7.31 -39.25 -0.29 0.87 16 20 F -0.12 -1.23 17.17 2.25 0.04 -1.20 16 21 C 0.03 0.33 7.30 -39.37 -0.29 0.04 16 22 F -0.12 -1.57 17.09 2.25 0.04 -1.53 16 23 C 0.15 2.17 7.25 -38.92 -0.28 1.89 16 24 F -0.10 -1.75 16.27 2.25 0.04 -1.72 16 25 C 0.09 2.08 5.53 -2.53 -0.01 2.07 16 26 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 27 H 0.38 9.85 7.25 45.56 0.33 10.18 16 28 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 31 H 0.06 0.67 5.69 -51.93 -0.30 0.38 16 32 H 0.16 1.31 6.10 -52.49 -0.32 0.99 16 33 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.09 2.28 7.42 -51.93 -0.39 1.90 16 35 H 0.07 1.49 8.03 -51.92 -0.42 1.08 16 LS Contribution 313.11 15.07 4.72 4.72 Total: -1.00 -29.02 313.11 -5.74 -34.76 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -2.32 Total: 8.01 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -2.88 Total: 3.63 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.02 Total: -34.40 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.38 Total: -26.87 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.11 Total: -4.44 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.02 -5.74 -34.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.923 kcal (2) G-P(sol) polarization free energy of solvation -29.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds