Wall clock time and date at job start Tue Mar 31 2020 11:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00022 * 2 1 4 4 H 1.48499 * 109.47631 * 270.00127 * 3 2 1 5 5 H 1.48503 * 109.46987 * 30.00191 * 3 2 1 6 6 H 1.48501 * 109.47183 * 150.00097 * 3 2 1 7 7 C 1.37879 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00349 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99743 * 359.97438 * 7 2 1 10 10 O 1.42893 * 110.88714 * 300.70266 * 9 7 2 11 11 C 1.55156 * 111.00277 * 176.82006 * 9 7 2 12 12 C 1.54426 * 102.89410 * 206.40926 * 11 9 7 13 13 N 1.47019 * 107.28537 * 22.18612 * 12 11 9 14 14 C 1.34776 * 125.65153 * 181.02553 * 13 12 11 15 15 O 1.21586 * 119.99979 * 174.73313 * 14 13 12 16 16 C 1.47575 * 119.99863 * 354.74045 * 14 13 12 17 17 C 1.39743 * 120.12965 * 315.67864 * 16 14 13 18 18 C 1.37756 * 119.93978 * 179.72575 * 17 16 14 19 19 C 1.38715 * 120.21505 * 0.55312 * 18 17 16 20 20 F 1.35100 * 119.86761 * 179.69855 * 19 18 17 21 21 C 1.38665 * 120.26456 * 359.72539 * 19 18 17 22 22 F 1.35097 * 119.96936 * 180.02562 * 21 19 18 23 23 C 1.38385 * 120.05703 * 359.97438 * 21 19 18 24 24 F 1.35098 * 120.10811 * 180.02562 * 23 21 19 25 25 C 1.47424 * 108.69934 * 1.06009 * 13 12 11 26 26 H 0.97002 * 119.99952 * 359.97438 * 1 2 3 27 27 H 0.96700 * 114.00388 * 59.30474 * 10 9 7 28 28 H 1.08998 * 110.72349 * 324.74708 * 11 9 7 29 29 H 1.08994 * 110.72057 * 88.02359 * 11 9 7 30 30 H 1.09009 * 109.87655 * 262.76299 * 12 11 9 31 31 H 1.09000 * 110.00854 * 141.67992 * 12 11 9 32 32 H 1.08002 * 120.02893 * 0.02562 * 17 16 14 33 33 H 1.07996 * 119.89026 * 180.28270 * 18 17 16 34 34 H 1.08998 * 110.36961 * 217.03359 * 25 13 12 35 35 H 1.09008 * 110.36512 * 94.71164 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4064 -2.5998 1.1477 11 6 2.2254 -3.7039 -0.0815 12 6 1.3622 -4.8015 -0.7410 13 7 0.2744 -4.1264 -1.4638 14 6 -0.7069 -4.7381 -2.1561 15 8 -1.6113 -4.0827 -2.6367 16 6 -0.6838 -6.2033 -2.3307 17 6 0.5069 -6.8504 -2.6717 18 6 0.5253 -8.2189 -2.8281 19 6 -0.6374 -8.9565 -2.6595 20 9 -0.6127 -10.2976 -2.8207 21 6 -1.8250 -8.3227 -2.3268 22 9 -2.9537 -9.0469 -2.1636 23 6 -1.8548 -6.9492 -2.1608 24 9 -3.0112 -6.3307 -1.8362 25 6 0.4353 -2.6694 -1.3065 26 1 -0.4850 0.8401 0.0004 27 1 -0.2523 -1.8949 1.2145 28 1 3.0857 -3.4628 -0.7058 29 1 2.5442 -4.0097 0.9149 30 1 0.9475 -5.4570 0.0249 31 1 1.9661 -5.3822 -1.4383 32 1 1.4130 -6.2786 -2.8076 33 1 1.4469 -8.7186 -3.0872 34 1 -0.5381 -2.1883 -1.2111 35 1 0.9831 -2.2547 -2.1527 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:50 Heat of formation + Delta-G solvation = -200.769751 kcal Electronic energy + Delta-G solvation = -26418.590290 eV Core-core repulsion = 21966.753089 eV Total energy + Delta-G solvation = -4451.837201 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.96850 -50.38335 -49.65218 -41.45560 -39.63035 -38.73421 -36.13868 -34.18951 -32.62020 -31.85574 -31.41141 -29.53926 -27.27628 -25.48390 -24.40663 -23.83373 -21.50660 -21.07372 -19.50303 -19.32627 -19.03828 -18.86646 -18.04820 -17.70539 -17.27791 -17.00906 -16.70063 -16.55350 -16.47101 -16.12862 -16.10962 -15.69363 -15.58210 -15.02823 -14.75119 -14.67812 -14.45112 -13.74247 -13.52412 -13.37618 -13.22457 -13.07649 -13.05311 -12.82867 -12.46462 -12.31941 -12.22835 -12.01935 -11.28493 -11.18071 -10.65222 -10.35058 -10.17592 -10.15275 -9.53853 -8.24493 -6.41736 -0.77683 -0.47362 1.33123 1.43437 1.46342 1.55504 1.74179 2.10011 2.18519 2.39573 2.92823 2.95778 3.02223 3.11369 3.31773 3.54208 3.79490 4.07080 4.12753 4.23361 4.30257 4.40712 4.54963 4.61527 4.73753 4.77154 4.80709 5.04445 5.11166 5.26122 5.35308 5.42513 5.48105 5.77242 6.06174 6.48812 6.67871 6.94292 7.29311 7.36475 8.80742 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.028694 B = 0.003483 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.581413 B = 8037.163061 C = 8514.446032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.025 3.975 3 Si 0.964 3.036 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.228 3.772 10 O -0.591 6.591 11 C -0.111 4.111 12 C 0.097 3.903 13 N -0.600 5.600 14 C 0.559 3.441 15 O -0.584 6.584 16 C -0.148 4.148 17 C -0.024 4.024 18 C -0.102 4.102 19 C 0.125 3.875 20 F -0.113 7.113 21 C 0.017 3.983 22 F -0.126 7.126 23 C 0.118 3.882 24 F -0.130 7.130 25 C 0.105 3.895 26 H 0.268 0.732 27 H 0.374 0.626 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.191 0.809 33 H 0.213 0.787 34 H 0.040 0.960 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.534 -17.998 -5.535 19.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.592 4.592 8 H 0.093 0.907 9 C 0.188 3.812 10 O -0.399 6.399 11 C -0.149 4.149 12 C -0.024 4.024 13 N -0.330 5.330 14 C 0.348 3.652 15 O -0.465 6.465 16 C -0.152 4.152 17 C -0.042 4.042 18 C -0.120 4.120 19 C 0.104 3.896 20 F -0.091 7.091 21 C -0.004 4.004 22 F -0.104 7.104 23 C 0.096 3.904 24 F -0.108 7.108 25 C -0.018 4.018 26 H 0.078 0.922 27 H 0.223 0.777 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.134 0.866 32 H 0.208 0.792 33 H 0.230 0.770 34 H 0.058 0.942 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.148 -18.168 -5.681 20.004 hybrid contribution -1.513 1.755 0.109 2.320 sum 4.635 -16.413 -5.572 17.942 Atomic orbital electron populations 1.69785 1.07343 1.28405 1.50376 1.25840 0.95635 1.02941 0.93137 0.85463 0.78758 0.78657 0.78199 1.20122 1.21473 1.18732 1.21854 0.94176 0.91044 1.52082 0.90735 1.19941 0.86789 0.93674 0.80825 1.86079 1.51522 1.54591 1.47758 1.22684 0.97370 0.93088 1.01763 1.22530 0.87849 0.95763 0.96288 1.48673 1.26709 1.08888 1.48762 1.18020 0.81049 0.87281 0.78874 1.90803 1.36403 1.67472 1.51860 1.19907 0.94451 0.92651 1.08218 1.21619 0.96148 0.94304 0.92113 1.21553 0.98136 0.92686 0.99583 1.17667 0.92555 0.78348 1.01038 1.91598 1.96889 1.28177 1.92468 1.17506 0.84333 0.87461 1.11138 1.91539 1.48754 1.76561 1.93582 1.17585 0.82383 0.88843 1.01570 1.91560 1.46772 1.82839 1.89613 1.22952 1.00292 0.78084 1.00434 0.92223 0.77664 0.88147 0.89626 0.90993 0.86569 0.79188 0.77011 0.94161 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.57 10.69 21.45 0.23 -49.34 16 2 C 0.03 1.27 5.29 84.66 0.45 1.72 16 3 Si 0.96 40.50 29.54 68.60 2.03 42.53 16 4 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.55 -27.29 8.26 25.60 0.21 -27.08 16 8 H 0.07 3.49 7.78 -2.91 -0.02 3.46 16 9 C 0.23 10.40 0.88 -10.15 -0.01 10.39 16 10 O -0.59 -29.83 13.17 -148.98 -1.96 -31.79 16 11 C -0.11 -3.67 6.13 31.82 0.20 -3.47 16 12 C 0.10 2.64 5.91 86.77 0.51 3.15 16 13 N -0.60 -22.43 3.33 -815.28 -2.71 -25.14 16 14 C 0.56 21.57 7.22 86.71 0.63 22.20 16 15 O -0.58 -28.62 16.67 -3.99 -0.07 -28.68 16 16 C -0.15 -4.08 5.40 -20.06 -0.11 -4.19 16 17 C -0.02 -0.36 8.42 22.52 0.19 -0.17 16 18 C -0.10 -1.03 10.00 22.27 0.22 -0.80 16 19 C 0.12 2.09 7.31 22.49 0.16 2.25 16 20 F -0.11 -1.89 17.17 44.97 0.77 -1.12 16 21 C 0.02 0.41 7.30 22.41 0.16 0.57 16 22 F -0.13 -3.38 17.09 44.97 0.77 -2.62 16 23 C 0.12 3.50 7.25 22.70 0.16 3.66 16 24 F -0.13 -4.83 16.27 44.97 0.73 -4.10 16 25 C 0.11 4.87 5.53 86.86 0.48 5.35 16 26 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 27 H 0.37 20.22 7.25 -74.06 -0.54 19.68 16 28 H 0.10 2.89 8.03 -2.39 -0.02 2.87 16 29 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.12 1.88 5.69 -2.39 -0.01 1.86 16 32 H 0.19 1.78 6.10 -2.91 -0.02 1.76 16 33 H 0.21 0.13 8.06 -2.91 -0.02 0.11 16 34 H 0.04 2.23 7.42 -2.39 -0.02 2.21 16 35 H 0.06 2.69 8.03 -2.38 -0.02 2.67 16 Total: -1.00 -70.12 313.11 3.69 -66.43 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.64 Total: 20.26 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 3.26 Total: 13.58 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -2.48 Total: -74.49 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -2.03 Total: -60.47 kcal Atomic # 9 Polarization: -10.11 SS G_CDS: 2.27 Total: -7.84 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -70.12 3.69 -66.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.344 kcal (2) G-P(sol) polarization free energy of solvation -70.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds