Wall clock time and date at job start Tue Mar 31 2020 11:23:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86801 * 120.00131 * 2 1
4 4 H 1.48504 * 109.47097 * 180.02562 * 3 2 1
5 5 H 1.48498 * 109.47412 * 300.00063 * 3 2 1
6 6 H 1.48501 * 109.47207 * 60.00515 * 3 2 1
7 7 C 1.37878 * 119.99704 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99979 * 179.97438 * 7 2 1
9 9 C 1.50696 * 120.00271 * 359.97438 * 7 2 1
10 10 O 1.42901 * 110.88712 * 303.88844 * 9 7 2
11 11 C 1.55153 * 111.00654 * 180.02562 * 9 7 2
12 12 C 1.54323 * 103.10236 * 206.30001 * 11 9 7
13 13 N 1.47486 * 107.03754 * 22.24109 * 12 11 9
14 14 C 1.34774 * 125.59533 * 181.08247 * 13 12 11
15 15 O 1.21603 * 120.00158 * 179.97438 * 14 13 12
16 16 C 1.47424 * 119.99840 * 359.93366 * 14 13 12
17 17 C 1.39979 * 120.16029 * 89.73040 * 16 14 13
18 18 F 1.35098 * 120.08706 * 359.97438 * 17 16 14
19 19 C 1.38099 * 119.83060 * 179.74070 * 17 16 14
20 20 C 1.38602 * 120.16544 * 0.51110 * 19 17 16
21 21 F 1.35096 * 119.83667 * 179.73822 * 20 19 17
22 22 C 1.38604 * 120.32807 * 359.76101 * 20 19 17
23 23 C 1.38094 * 120.16440 * 359.97438 * 22 20 19
24 24 F 1.35104 * 120.08344 * 179.97438 * 23 22 20
25 25 C 1.47428 * 108.75727 * 1.02624 * 13 12 11
26 26 H 0.97007 * 119.99658 * 359.97438 * 1 2 3
27 27 H 0.96703 * 113.99966 * 56.11386 * 10 9 7
28 28 H 1.09002 * 110.72030 * 324.75268 * 11 9 7
29 29 H 1.09003 * 110.72184 * 87.84919 * 11 9 7
30 30 H 1.09000 * 109.88693 * 141.69901 * 12 11 9
31 31 H 1.09005 * 109.88012 * 262.86516 * 12 11 9
32 32 H 1.07998 * 119.91922 * 180.24745 * 19 17 16
33 33 H 1.07999 * 119.91633 * 179.97438 * 22 20 19
34 34 H 1.09000 * 110.36462 * 217.05803 * 25 13 12
35 35 H 1.08996 * 110.46287 * 94.77884 * 25 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8905 2.3965 -1.2125
6 1 1.8905 2.3964 1.2126
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 8 0.3520 -2.5684 1.1081
11 6 2.2272 -3.7050 -0.0005
12 6 1.4001 -4.8248 -0.6665
13 7 0.3462 -4.1684 -1.4626
14 6 -0.6013 -4.8007 -2.1829
15 8 -1.4245 -4.1559 -2.8036
16 6 -0.6391 -6.2740 -2.2190
17 6 -1.3830 -6.9819 -1.2678
18 9 -2.0688 -6.3169 -0.3125
19 6 -1.4181 -8.3618 -1.3112
20 6 -0.7105 -9.0461 -2.2870
21 9 -0.7452 -10.3962 -2.3200
22 6 0.0329 -8.3521 -3.2287
23 6 0.0731 -6.9720 -3.2013
24 9 0.7986 -6.2973 -4.1197
25 6 0.4995 -2.7074 -1.3391
26 1 -0.4850 0.8401 0.0004
27 1 -0.2775 -1.8355 1.1504
28 1 3.1170 -3.4809 -0.5889
29 1 2.4997 -3.9807 1.0183
30 1 2.0401 -5.4228 -1.3152
31 1 0.9493 -5.4574 0.0982
32 1 -1.9948 -8.9093 -0.5804
33 1 0.5820 -8.8921 -3.9859
34 1 -0.4773 -2.2250 -1.3048
35 1 1.0869 -2.3144 -2.1690
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000592845715.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:23:17
Heat of formation + Delta-G solvation = -184.694880 kcal
Electronic energy + Delta-G solvation = -26689.530796 eV
Core-core repulsion = 22238.390655 eV
Total energy + Delta-G solvation = -4451.140142 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.087 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-49.48571 -49.33949 -49.26447 -39.81595 -38.41440 -37.13873 -34.34379 -32.19393
-31.40720 -30.99359 -29.98316 -27.93467 -25.54453 -23.98523 -23.51677 -22.48898
-19.82368 -19.54900 -18.86531 -18.19910 -17.45266 -17.08884 -16.59945 -16.26810
-16.23968 -15.81651 -15.58117 -15.47977 -15.26528 -14.89491 -14.84138 -14.64931
-14.35809 -13.24428 -13.23844 -12.99665 -12.90552 -12.60816 -12.25606 -12.06096
-11.95332 -11.68268 -11.53320 -11.10489 -10.86492 -10.67379 -10.50622 -10.23445
-9.80010 -9.46186 -9.31095 -9.17483 -8.73834 -8.45997 -7.92979 -6.33779
-4.43601 0.29166 0.45825 2.69825 2.72498 3.11511 3.17110 3.26306
3.29325 3.38277 3.79608 3.83986 4.21949 4.31564 4.40961 4.47859
4.93286 5.22501 5.26539 5.31948 5.32693 5.36893 5.50602 5.57461
5.74250 5.96300 6.06121 6.24056 6.41968 6.64414 6.75714 6.81523
7.17195 7.26704 7.69683 7.92589 7.98650 8.42688 8.60565 9.26554
9.41440 10.73645
Molecular weight = 315.09amu
Principal moments of inertia in cm(-1)
A = 0.026200 B = 0.003776 C = 0.003673
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1068.442887 B = 7413.993564 C = 7621.435959
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.071 3.929
3 Si 0.906 3.094
4 H -0.271 1.271
5 H -0.281 1.281
6 H -0.281 1.281
7 C -0.538 4.538
8 H 0.069 0.931
9 C 0.251 3.749
10 O -0.583 6.583
11 C -0.117 4.117
12 C 0.102 3.898
13 N -0.593 5.593
14 C 0.568 3.432
15 O -0.529 6.529
16 C -0.193 4.193
17 C 0.196 3.804
18 F -0.106 7.106
19 C -0.203 4.203
20 C 0.171 3.829
21 F -0.120 7.120
22 C -0.204 4.204
23 C 0.193 3.807
24 F -0.111 7.111
25 C 0.092 3.908
26 H 0.272 0.728
27 H 0.387 0.613
28 H 0.079 0.921
29 H 0.077 0.923
30 H 0.057 0.943
31 H 0.061 0.939
32 H 0.162 0.838
33 H 0.161 0.839
34 H 0.085 0.915
35 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.532 -16.961 -3.382 17.303
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.132 4.132
3 Si 0.733 3.267
4 H -0.195 1.195
5 H -0.207 1.207
6 H -0.207 1.207
7 C -0.577 4.577
8 H 0.087 0.913
9 C 0.210 3.790
10 O -0.394 6.394
11 C -0.155 4.155
12 C -0.021 4.021
13 N -0.324 5.324
14 C 0.353 3.647
15 O -0.407 6.407
16 C -0.198 4.198
17 C 0.175 3.825
18 F -0.084 7.084
19 C -0.223 4.223
20 C 0.151 3.849
21 F -0.098 7.098
22 C -0.223 4.223
23 C 0.172 3.828
24 F -0.089 7.089
25 C -0.029 4.029
26 H 0.082 0.918
27 H 0.239 0.761
28 H 0.098 0.902
29 H 0.096 0.904
30 H 0.075 0.925
31 H 0.080 0.920
32 H 0.179 0.821
33 H 0.179 0.821
34 H 0.103 0.897
35 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 0.230 -17.042 -3.623 17.424
hybrid contribution 0.063 1.321 -0.197 1.337
sum 0.294 -15.720 -3.820 16.180
Atomic orbital electron populations
1.69573 1.06068 1.28016 1.49713 1.25092 0.95041 0.99882 0.93210
0.86317 0.80020 0.82564 0.77825 1.19533 1.20717 1.20688 1.21529
0.93790 0.89960 1.52374 0.91279 1.19588 0.85721 0.91766 0.81965
1.86069 1.51065 1.53037 1.49188 1.22630 0.97884 0.94591 1.00395
1.22157 0.89383 0.96588 0.93963 1.48825 1.28127 1.10022 1.45405
1.17169 0.81797 0.85141 0.80578 1.90824 1.39054 1.66395 1.44395
1.20213 1.04186 0.96452 0.98971 1.16818 0.91126 0.88712 0.85797
1.91651 1.76064 1.80453 1.60267 1.20981 1.05845 0.92602 1.02852
1.16855 0.96131 0.77228 0.94638 1.91574 1.94647 1.27861 1.95756
1.20946 1.05642 0.92462 1.03290 1.16779 0.90602 0.88615 0.86781
1.91618 1.74127 1.80041 1.63070 1.23430 1.02939 0.75594 1.00917
0.91830 0.76079 0.90242 0.90432 0.92505 0.92036 0.82053 0.82112
0.89651 0.91614
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -23.56 10.72 55.43 0.59 -22.97 16
2 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16
3 Si 0.91 20.01 29.54 -169.99 -5.02 14.99 16
4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16
5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16
7 C -0.54 -13.71 8.25 -34.44 -0.28 -13.99 16
8 H 0.07 1.72 7.76 -52.48 -0.41 1.31 16
9 C 0.25 5.96 0.89 -89.62 -0.08 5.88 16
10 O -0.58 -14.81 13.18 -35.23 -0.46 -15.27 16
11 C -0.12 -2.27 6.11 -24.90 -0.15 -2.42 16
12 C 0.10 1.79 6.50 -2.81 -0.02 1.77 16
13 N -0.59 -12.31 3.34 -171.41 -0.57 -12.88 16
14 C 0.57 11.67 6.56 -12.52 -0.08 11.59 16
15 O -0.53 -12.78 17.36 5.27 0.09 -12.69 16
16 C -0.19 -3.04 4.82 -104.85 -0.50 -3.54 16
17 C 0.20 2.69 7.29 -38.98 -0.28 2.41 16
18 F -0.11 -1.68 16.83 2.25 0.04 -1.64 16
19 C -0.20 -2.05 9.99 -39.50 -0.39 -2.44 16
20 C 0.17 1.61 7.30 -39.31 -0.29 1.33 16
21 F -0.12 -1.07 17.26 2.25 0.04 -1.03 16
22 C -0.20 -1.97 9.99 -39.50 -0.39 -2.37 16
23 C 0.19 2.53 7.29 -38.98 -0.28 2.25 16
24 F -0.11 -1.59 16.83 2.25 0.04 -1.55 16
25 C 0.09 2.19 5.63 -2.52 -0.01 2.18 16
26 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16
27 H 0.39 10.21 6.93 45.56 0.32 10.52 16
28 H 0.08 1.43 8.01 -51.93 -0.42 1.02 16
29 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16
30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
32 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16
33 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16
34 H 0.09 2.29 7.64 -51.93 -0.40 1.89 16
35 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16
LS Contribution 319.51 15.07 4.81 4.81
Total: -1.00 -29.20 319.51 -5.89 -35.09
By element:
Atomic # 1 Polarization: 11.34 SS G_CDS: -2.57 Total: 8.77 kcal
Atomic # 6 Polarization: 7.23 SS G_CDS: -2.87 Total: 4.36 kcal
Atomic # 7 Polarization: -35.87 SS G_CDS: 0.02 Total: -35.85 kcal
Atomic # 8 Polarization: -27.58 SS G_CDS: -0.37 Total: -27.96 kcal
Atomic # 9 Polarization: -4.34 SS G_CDS: 0.11 Total: -4.22 kcal
Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal
Total LS contribution 4.81 Total: 4.81 kcal
Total: -29.20 -5.89 -35.09 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592845715.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -149.605 kcal
(2) G-P(sol) polarization free energy of solvation -29.203 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.809 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.090 kcal
(6) G-S(sol) free energy of system = (1) + (5) -184.695 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds