Wall clock time and date at job start Tue Mar 31 2020 11:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00131 * 2 1 4 4 H 1.48504 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47412 * 300.00063 * 3 2 1 6 6 H 1.48501 * 109.47207 * 60.00515 * 3 2 1 7 7 C 1.37878 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00271 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.88712 * 303.88844 * 9 7 2 11 11 C 1.55153 * 111.00654 * 180.02562 * 9 7 2 12 12 C 1.54323 * 103.10236 * 206.30001 * 11 9 7 13 13 N 1.47486 * 107.03754 * 22.24109 * 12 11 9 14 14 C 1.34774 * 125.59533 * 181.08247 * 13 12 11 15 15 O 1.21603 * 120.00158 * 179.97438 * 14 13 12 16 16 C 1.47424 * 119.99840 * 359.93366 * 14 13 12 17 17 C 1.39979 * 120.16029 * 89.73040 * 16 14 13 18 18 F 1.35098 * 120.08706 * 359.97438 * 17 16 14 19 19 C 1.38099 * 119.83060 * 179.74070 * 17 16 14 20 20 C 1.38602 * 120.16544 * 0.51110 * 19 17 16 21 21 F 1.35096 * 119.83667 * 179.73822 * 20 19 17 22 22 C 1.38604 * 120.32807 * 359.76101 * 20 19 17 23 23 C 1.38094 * 120.16440 * 359.97438 * 22 20 19 24 24 F 1.35104 * 120.08344 * 179.97438 * 23 22 20 25 25 C 1.47428 * 108.75727 * 1.02624 * 13 12 11 26 26 H 0.97007 * 119.99658 * 359.97438 * 1 2 3 27 27 H 0.96703 * 113.99966 * 56.11386 * 10 9 7 28 28 H 1.09002 * 110.72030 * 324.75268 * 11 9 7 29 29 H 1.09003 * 110.72184 * 87.84919 * 11 9 7 30 30 H 1.09000 * 109.88693 * 141.69901 * 12 11 9 31 31 H 1.09005 * 109.88012 * 262.86516 * 12 11 9 32 32 H 1.07998 * 119.91922 * 180.24745 * 19 17 16 33 33 H 1.07999 * 119.91633 * 179.97438 * 22 20 19 34 34 H 1.09000 * 110.36462 * 217.05803 * 25 13 12 35 35 H 1.08996 * 110.46287 * 94.77884 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3520 -2.5684 1.1081 11 6 2.2272 -3.7050 -0.0005 12 6 1.4001 -4.8248 -0.6665 13 7 0.3462 -4.1684 -1.4626 14 6 -0.6013 -4.8007 -2.1829 15 8 -1.4245 -4.1559 -2.8036 16 6 -0.6391 -6.2740 -2.2190 17 6 -1.3830 -6.9819 -1.2678 18 9 -2.0688 -6.3169 -0.3125 19 6 -1.4181 -8.3618 -1.3112 20 6 -0.7105 -9.0461 -2.2870 21 9 -0.7452 -10.3962 -2.3200 22 6 0.0329 -8.3521 -3.2287 23 6 0.0731 -6.9720 -3.2013 24 9 0.7986 -6.2973 -4.1197 25 6 0.4995 -2.7074 -1.3391 26 1 -0.4850 0.8401 0.0004 27 1 -0.2775 -1.8355 1.1504 28 1 3.1170 -3.4809 -0.5889 29 1 2.4997 -3.9807 1.0183 30 1 2.0401 -5.4228 -1.3152 31 1 0.9493 -5.4574 0.0982 32 1 -1.9948 -8.9093 -0.5804 33 1 0.5820 -8.8921 -3.9859 34 1 -0.4773 -2.2250 -1.3048 35 1 1.0869 -2.3144 -2.1690 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845715.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:17 Heat of formation + Delta-G solvation = -184.694880 kcal Electronic energy + Delta-G solvation = -26689.530796 eV Core-core repulsion = 22238.390655 eV Total energy + Delta-G solvation = -4451.140142 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.48571 -49.33949 -49.26447 -39.81595 -38.41440 -37.13873 -34.34379 -32.19393 -31.40720 -30.99359 -29.98316 -27.93467 -25.54453 -23.98523 -23.51677 -22.48898 -19.82368 -19.54900 -18.86531 -18.19910 -17.45266 -17.08884 -16.59945 -16.26810 -16.23968 -15.81651 -15.58117 -15.47977 -15.26528 -14.89491 -14.84138 -14.64931 -14.35809 -13.24428 -13.23844 -12.99665 -12.90552 -12.60816 -12.25606 -12.06096 -11.95332 -11.68268 -11.53320 -11.10489 -10.86492 -10.67379 -10.50622 -10.23445 -9.80010 -9.46186 -9.31095 -9.17483 -8.73834 -8.45997 -7.92979 -6.33779 -4.43601 0.29166 0.45825 2.69825 2.72498 3.11511 3.17110 3.26306 3.29325 3.38277 3.79608 3.83986 4.21949 4.31564 4.40961 4.47859 4.93286 5.22501 5.26539 5.31948 5.32693 5.36893 5.50602 5.57461 5.74250 5.96300 6.06121 6.24056 6.41968 6.64414 6.75714 6.81523 7.17195 7.26704 7.69683 7.92589 7.98650 8.42688 8.60565 9.26554 9.41440 10.73645 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.026200 B = 0.003776 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.442887 B = 7413.993564 C = 7621.435959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.251 3.749 10 O -0.583 6.583 11 C -0.117 4.117 12 C 0.102 3.898 13 N -0.593 5.593 14 C 0.568 3.432 15 O -0.529 6.529 16 C -0.193 4.193 17 C 0.196 3.804 18 F -0.106 7.106 19 C -0.203 4.203 20 C 0.171 3.829 21 F -0.120 7.120 22 C -0.204 4.204 23 C 0.193 3.807 24 F -0.111 7.111 25 C 0.092 3.908 26 H 0.272 0.728 27 H 0.387 0.613 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.085 0.915 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.532 -16.961 -3.382 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.087 0.913 9 C 0.210 3.790 10 O -0.394 6.394 11 C -0.155 4.155 12 C -0.021 4.021 13 N -0.324 5.324 14 C 0.353 3.647 15 O -0.407 6.407 16 C -0.198 4.198 17 C 0.175 3.825 18 F -0.084 7.084 19 C -0.223 4.223 20 C 0.151 3.849 21 F -0.098 7.098 22 C -0.223 4.223 23 C 0.172 3.828 24 F -0.089 7.089 25 C -0.029 4.029 26 H 0.082 0.918 27 H 0.239 0.761 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.179 0.821 33 H 0.179 0.821 34 H 0.103 0.897 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.230 -17.042 -3.623 17.424 hybrid contribution 0.063 1.321 -0.197 1.337 sum 0.294 -15.720 -3.820 16.180 Atomic orbital electron populations 1.69573 1.06068 1.28016 1.49713 1.25092 0.95041 0.99882 0.93210 0.86317 0.80020 0.82564 0.77825 1.19533 1.20717 1.20688 1.21529 0.93790 0.89960 1.52374 0.91279 1.19588 0.85721 0.91766 0.81965 1.86069 1.51065 1.53037 1.49188 1.22630 0.97884 0.94591 1.00395 1.22157 0.89383 0.96588 0.93963 1.48825 1.28127 1.10022 1.45405 1.17169 0.81797 0.85141 0.80578 1.90824 1.39054 1.66395 1.44395 1.20213 1.04186 0.96452 0.98971 1.16818 0.91126 0.88712 0.85797 1.91651 1.76064 1.80453 1.60267 1.20981 1.05845 0.92602 1.02852 1.16855 0.96131 0.77228 0.94638 1.91574 1.94647 1.27861 1.95756 1.20946 1.05642 0.92462 1.03290 1.16779 0.90602 0.88615 0.86781 1.91618 1.74127 1.80041 1.63070 1.23430 1.02939 0.75594 1.00917 0.91830 0.76079 0.90242 0.90432 0.92505 0.92036 0.82053 0.82112 0.89651 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.56 10.72 55.43 0.59 -22.97 16 2 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 3 Si 0.91 20.01 29.54 -169.99 -5.02 14.99 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -13.71 8.25 -34.44 -0.28 -13.99 16 8 H 0.07 1.72 7.76 -52.48 -0.41 1.31 16 9 C 0.25 5.96 0.89 -89.62 -0.08 5.88 16 10 O -0.58 -14.81 13.18 -35.23 -0.46 -15.27 16 11 C -0.12 -2.27 6.11 -24.90 -0.15 -2.42 16 12 C 0.10 1.79 6.50 -2.81 -0.02 1.77 16 13 N -0.59 -12.31 3.34 -171.41 -0.57 -12.88 16 14 C 0.57 11.67 6.56 -12.52 -0.08 11.59 16 15 O -0.53 -12.78 17.36 5.27 0.09 -12.69 16 16 C -0.19 -3.04 4.82 -104.85 -0.50 -3.54 16 17 C 0.20 2.69 7.29 -38.98 -0.28 2.41 16 18 F -0.11 -1.68 16.83 2.25 0.04 -1.64 16 19 C -0.20 -2.05 9.99 -39.50 -0.39 -2.44 16 20 C 0.17 1.61 7.30 -39.31 -0.29 1.33 16 21 F -0.12 -1.07 17.26 2.25 0.04 -1.03 16 22 C -0.20 -1.97 9.99 -39.50 -0.39 -2.37 16 23 C 0.19 2.53 7.29 -38.98 -0.28 2.25 16 24 F -0.11 -1.59 16.83 2.25 0.04 -1.55 16 25 C 0.09 2.19 5.63 -2.52 -0.01 2.18 16 26 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 27 H 0.39 10.21 6.93 45.56 0.32 10.52 16 28 H 0.08 1.43 8.01 -51.93 -0.42 1.02 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.09 2.29 7.64 -51.93 -0.40 1.89 16 35 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16 LS Contribution 319.51 15.07 4.81 4.81 Total: -1.00 -29.20 319.51 -5.89 -35.09 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -2.57 Total: 8.77 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -2.87 Total: 4.36 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.02 Total: -35.85 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.37 Total: -27.96 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.11 Total: -4.22 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.20 -5.89 -35.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845715.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.605 kcal (2) G-P(sol) polarization free energy of solvation -29.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds