Wall clock time and date at job start Tue Mar 31 2020 11:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00131 * 2 1 4 4 H 1.48504 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47412 * 300.00063 * 3 2 1 6 6 H 1.48501 * 109.47207 * 60.00515 * 3 2 1 7 7 C 1.37878 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00271 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.88712 * 303.88844 * 9 7 2 11 11 C 1.55153 * 111.00654 * 180.02562 * 9 7 2 12 12 C 1.54323 * 103.10236 * 206.30001 * 11 9 7 13 13 N 1.47486 * 107.03754 * 22.24109 * 12 11 9 14 14 C 1.34774 * 125.59533 * 181.08247 * 13 12 11 15 15 O 1.21603 * 120.00158 * 179.97438 * 14 13 12 16 16 C 1.47424 * 119.99840 * 359.93366 * 14 13 12 17 17 C 1.39979 * 120.16029 * 89.73040 * 16 14 13 18 18 F 1.35098 * 120.08706 * 359.97438 * 17 16 14 19 19 C 1.38099 * 119.83060 * 179.74070 * 17 16 14 20 20 C 1.38602 * 120.16544 * 0.51110 * 19 17 16 21 21 F 1.35096 * 119.83667 * 179.73822 * 20 19 17 22 22 C 1.38604 * 120.32807 * 359.76101 * 20 19 17 23 23 C 1.38094 * 120.16440 * 359.97438 * 22 20 19 24 24 F 1.35104 * 120.08344 * 179.97438 * 23 22 20 25 25 C 1.47428 * 108.75727 * 1.02624 * 13 12 11 26 26 H 0.97007 * 119.99658 * 359.97438 * 1 2 3 27 27 H 0.96703 * 113.99966 * 56.11386 * 10 9 7 28 28 H 1.09002 * 110.72030 * 324.75268 * 11 9 7 29 29 H 1.09003 * 110.72184 * 87.84919 * 11 9 7 30 30 H 1.09000 * 109.88693 * 141.69901 * 12 11 9 31 31 H 1.09005 * 109.88012 * 262.86516 * 12 11 9 32 32 H 1.07998 * 119.91922 * 180.24745 * 19 17 16 33 33 H 1.07999 * 119.91633 * 179.97438 * 22 20 19 34 34 H 1.09000 * 110.36462 * 217.05803 * 25 13 12 35 35 H 1.08996 * 110.46287 * 94.77884 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3520 -2.5684 1.1081 11 6 2.2272 -3.7050 -0.0005 12 6 1.4001 -4.8248 -0.6665 13 7 0.3462 -4.1684 -1.4626 14 6 -0.6013 -4.8007 -2.1829 15 8 -1.4245 -4.1559 -2.8036 16 6 -0.6391 -6.2740 -2.2190 17 6 -1.3830 -6.9819 -1.2678 18 9 -2.0688 -6.3169 -0.3125 19 6 -1.4181 -8.3618 -1.3112 20 6 -0.7105 -9.0461 -2.2870 21 9 -0.7452 -10.3962 -2.3200 22 6 0.0329 -8.3521 -3.2287 23 6 0.0731 -6.9720 -3.2013 24 9 0.7986 -6.2973 -4.1197 25 6 0.4995 -2.7074 -1.3391 26 1 -0.4850 0.8401 0.0004 27 1 -0.2775 -1.8355 1.1504 28 1 3.1170 -3.4809 -0.5889 29 1 2.4997 -3.9807 1.0183 30 1 2.0401 -5.4228 -1.3152 31 1 0.9493 -5.4574 0.0982 32 1 -1.9948 -8.9093 -0.5804 33 1 0.5820 -8.8921 -3.9859 34 1 -0.4773 -2.2250 -1.3048 35 1 1.0869 -2.3144 -2.1690 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592845715.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:17 Heat of formation + Delta-G solvation = -204.270372 kcal Electronic energy + Delta-G solvation = -26690.379654 eV Core-core repulsion = 22238.390655 eV Total energy + Delta-G solvation = -4451.988999 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.38691 -50.36664 -50.23673 -41.32016 -39.63362 -38.78576 -36.17060 -34.18558 -32.69442 -31.89152 -31.48298 -29.68175 -27.30748 -25.33659 -24.44969 -23.91445 -21.55595 -21.02716 -19.83389 -19.29151 -19.14425 -18.67706 -17.67756 -17.28569 -17.20977 -17.13616 -16.90834 -16.67013 -16.52797 -16.48212 -16.29321 -15.94824 -15.49713 -14.98291 -14.78541 -14.75099 -14.29302 -13.62260 -13.58269 -13.51500 -13.37677 -13.10891 -12.93296 -12.88205 -12.60126 -12.34931 -12.22530 -12.16414 -11.43182 -11.26699 -10.68904 -10.40451 -10.20972 -10.15903 -9.67180 -8.28788 -6.46153 -0.67823 -0.43287 1.18355 1.40700 1.44131 1.55125 1.71219 1.92602 2.20852 2.36873 2.85410 2.92198 2.97278 3.10976 3.48121 3.58900 3.71609 4.04901 4.10553 4.22696 4.35206 4.37173 4.39945 4.43238 4.54467 4.65068 4.71712 4.92351 5.00844 5.15130 5.31541 5.36377 5.40143 5.72987 5.99139 6.37561 6.62469 6.81973 7.26712 7.35265 8.77382 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.026200 B = 0.003776 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.442887 B = 7413.993564 C = 7621.435959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.025 3.975 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.234 3.766 10 O -0.590 6.590 11 C -0.111 4.111 12 C 0.105 3.895 13 N -0.598 5.598 14 C 0.563 3.437 15 O -0.582 6.582 16 C -0.217 4.217 17 C 0.179 3.821 18 F -0.127 7.127 19 C -0.178 4.178 20 C 0.191 3.809 21 F -0.108 7.108 22 C -0.175 4.175 23 C 0.184 3.816 24 F -0.122 7.122 25 C 0.104 3.896 26 H 0.271 0.729 27 H 0.378 0.622 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.192 0.808 33 H 0.196 0.804 34 H 0.042 0.958 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.056 -19.990 -3.475 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.175 4.175 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.092 0.908 9 C 0.193 3.807 10 O -0.399 6.399 11 C -0.149 4.149 12 C -0.017 4.017 13 N -0.329 5.329 14 C 0.351 3.649 15 O -0.463 6.463 16 C -0.223 4.223 17 C 0.159 3.841 18 F -0.105 7.105 19 C -0.198 4.198 20 C 0.171 3.829 21 F -0.086 7.086 22 C -0.195 4.195 23 C 0.164 3.836 24 F -0.101 7.101 25 C -0.019 4.019 26 H 0.081 0.919 27 H 0.228 0.772 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.209 0.791 33 H 0.213 0.787 34 H 0.061 0.939 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.788 -20.117 -3.700 20.533 hybrid contribution -0.436 2.151 -0.190 2.203 sum 1.352 -17.966 -3.890 18.432 Atomic orbital electron populations 1.69693 1.07355 1.28569 1.50366 1.25866 0.95725 1.03042 0.92916 0.85352 0.79207 0.78662 0.77485 1.18525 1.20928 1.20526 1.21869 0.94191 0.90991 1.52288 0.90796 1.19847 0.86156 0.93460 0.81190 1.86058 1.51194 1.52592 1.50051 1.22640 0.97475 0.93000 1.01737 1.22316 0.88757 0.96087 0.94496 1.48906 1.29199 1.08890 1.45870 1.17923 0.80486 0.87368 0.79125 1.90774 1.40811 1.68332 1.46359 1.19916 1.07399 0.93190 1.01746 1.16992 0.91667 0.89890 0.85595 1.91601 1.76676 1.81152 1.61067 1.21180 1.04821 0.90777 1.02998 1.16756 0.94918 0.77526 0.93726 1.91626 1.94389 1.26980 1.95567 1.21186 1.04324 0.90688 1.03262 1.16871 0.90872 0.89649 0.86237 1.91591 1.74455 1.80581 1.63424 1.23004 1.00302 0.77756 1.00842 0.91942 0.77155 0.88758 0.89216 0.88927 0.90835 0.79074 0.78658 0.93900 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.41 10.72 21.45 0.23 -50.18 16 2 C 0.02 1.30 5.30 84.66 0.45 1.75 16 3 Si 0.97 41.51 29.54 68.60 2.03 43.53 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.56 -28.64 8.25 25.60 0.21 -28.43 16 8 H 0.07 3.65 7.76 -2.91 -0.02 3.62 16 9 C 0.23 11.36 0.89 -10.15 -0.01 11.35 16 10 O -0.59 -30.88 13.18 -148.98 -1.96 -32.84 16 11 C -0.11 -4.16 6.11 31.78 0.19 -3.97 16 12 C 0.10 3.55 6.50 86.64 0.56 4.11 16 13 N -0.60 -25.45 3.34 -814.47 -2.72 -28.17 16 14 C 0.56 23.93 6.56 86.66 0.57 24.49 16 15 O -0.58 -29.84 17.36 -4.04 -0.07 -29.91 16 16 C -0.22 -6.71 4.82 -20.01 -0.10 -6.80 16 17 C 0.18 4.67 7.29 22.66 0.17 4.84 16 18 F -0.13 -4.02 16.83 44.97 0.76 -3.27 16 19 C -0.18 -2.94 9.99 22.32 0.22 -2.72 16 20 C 0.19 2.69 7.30 22.44 0.16 2.85 16 21 F -0.11 -1.34 17.26 44.97 0.78 -0.56 16 22 C -0.18 -2.64 9.99 22.32 0.22 -2.42 16 23 C 0.18 4.45 7.29 22.66 0.17 4.61 16 24 F -0.12 -3.37 16.83 44.97 0.76 -2.61 16 25 C 0.10 5.17 5.63 86.86 0.49 5.66 16 26 H 0.27 14.19 8.31 -92.70 -0.77 13.42 16 27 H 0.38 20.96 6.93 -74.06 -0.51 20.45 16 28 H 0.09 3.23 8.01 -2.39 -0.02 3.21 16 29 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.19 2.01 8.06 -2.91 -0.02 1.98 16 33 H 0.20 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.04 2.47 7.64 -2.39 -0.02 2.45 16 35 H 0.05 2.71 8.03 -2.39 -0.02 2.69 16 Total: -1.00 -67.68 319.51 3.76 -63.92 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.65 Total: 24.74 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 3.31 Total: 15.33 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -2.49 Total: -78.34 kcal Atomic # 8 Polarization: -60.72 SS G_CDS: -2.03 Total: -62.75 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 2.29 Total: -6.43 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -67.68 3.76 -63.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845715.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.347 kcal (2) G-P(sol) polarization free energy of solvation -67.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds