Wall clock time and date at job start Tue Mar 31 2020 11:24:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86799 * 120.00440 * 2 1
4 4 H 1.48501 * 109.47255 * 270.00015 * 3 2 1
5 5 H 1.48498 * 109.46955 * 29.99907 * 3 2 1
6 6 H 1.48502 * 109.47289 * 149.99850 * 3 2 1
7 7 C 1.37883 * 119.99674 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00089 * 179.97438 * 7 2 1
9 9 C 1.50701 * 119.99976 * 0.02562 * 7 2 1
10 10 O 1.42899 * 110.64037 * 56.86080 * 9 7 2
11 11 C 1.55160 * 110.71875 * 179.97438 * 9 7 2
12 12 C 1.54906 * 101.61342 * 154.02462 * 11 9 7
13 13 N 1.47472 * 104.81337 * 323.04345 * 12 11 9
14 14 C 1.34774 * 125.63102 * 204.04970 * 13 12 11
15 15 O 1.21583 * 120.00109 * 174.72281 * 14 13 12
16 16 C 1.47568 * 119.99924 * 354.72593 * 14 13 12
17 17 C 1.39754 * 120.13254 * 323.60744 * 16 14 13
18 18 C 1.37929 * 119.87439 * 179.78567 * 17 16 14
19 19 F 1.35091 * 119.92363 * 180.23000 * 18 17 16
20 20 C 1.38944 * 120.14375 * 0.47062 * 18 17 16
21 21 F 1.35099 * 119.86049 * 179.75959 * 20 18 17
22 22 C 1.38452 * 120.27104 * 359.78132 * 20 18 17
23 23 C 1.38214 * 120.11782 * 359.97438 * 22 20 18
24 24 F 1.35100 * 120.06761 * 180.02562 * 23 22 20
25 25 C 1.47023 * 108.72007 * 24.06942 * 13 12 11
26 26 H 0.96998 * 119.99612 * 0.02562 * 1 2 3
27 27 H 0.96701 * 114.00029 * 303.14020 * 10 9 7
28 28 H 1.08994 * 111.00720 * 272.11730 * 11 9 7
29 29 H 1.09004 * 110.99823 * 35.93395 * 11 9 7
30 30 H 1.09000 * 110.37097 * 81.85269 * 12 11 9
31 31 H 1.09001 * 110.36644 * 204.17435 * 12 11 9
32 32 H 1.07990 * 120.06207 * 0.02617 * 17 16 14
33 33 H 1.07994 * 119.93724 * 179.97438 * 22 20 18
34 34 H 1.08994 * 109.88449 * 239.55800 * 25 13 12
35 35 H 1.08999 * 109.87881 * 118.39185 * 25 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4968 2.0464 -1.4001
5 1 1.4467 2.6526 0.7000
6 1 3.5468 1.4400 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0001
9 6 1.2509 -2.4992 0.0005
10 8 0.3663 -2.5701 -1.1195
11 6 2.2332 -3.7003 0.0005
12 6 1.3747 -4.8052 0.6651
13 7 0.5902 -4.1032 1.6979
14 6 0.0649 -4.6673 2.8034
15 8 -0.4839 -3.9737 3.6377
16 6 0.1557 -6.1268 3.0013
17 6 0.0461 -6.9912 1.9086
18 6 0.1362 -8.3542 2.0991
19 9 0.0351 -9.1904 1.0430
20 6 0.3258 -8.8693 3.3756
21 9 0.4084 -10.2057 3.5562
22 6 0.4299 -8.0188 4.4630
23 6 0.3463 -6.6508 4.2841
24 9 0.4485 -5.8218 5.3459
25 6 0.4758 -2.6865 1.3217
26 1 -0.4849 0.8401 -0.0004
27 1 -0.2682 -1.8419 -1.1663
28 1 2.5096 -3.9789 -1.0163
29 1 3.1183 -3.4810 0.5977
30 1 0.7114 -5.2631 -0.0687
31 1 2.0150 -5.5599 1.1219
32 1 -0.1050 -6.5924 0.9165
33 1 0.5768 -8.4250 5.4528
34 1 0.9122 -2.0600 2.0996
35 1 -0.5724 -2.4250 1.1769
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000592846034.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:24:21
Heat of formation + Delta-G solvation = -182.640152 kcal
Electronic energy + Delta-G solvation = -26378.587003 eV
Core-core repulsion = 21927.535960 eV
Total energy + Delta-G solvation = -4451.051042 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.087 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-49.86142 -49.17800 -48.91420 -40.11405 -38.39050 -37.21531 -34.50758 -32.24262
-31.80701 -30.51064 -29.97302 -27.97441 -25.61031 -24.42818 -23.30796 -22.52797
-20.04440 -19.57058 -18.52224 -18.22160 -17.60089 -17.30255 -16.83296 -16.59851
-15.89469 -15.77088 -15.53236 -15.30522 -14.97849 -14.85289 -14.83964 -14.62720
-14.22804 -13.75159 -13.32606 -13.07874 -12.95380 -12.58132 -12.27903 -12.15703
-11.99764 -11.65633 -11.51248 -11.13114 -10.91652 -10.75588 -10.54810 -10.26946
-9.79752 -9.56265 -9.43032 -8.96919 -8.74098 -8.42505 -8.10247 -6.36977
-4.45671 0.14185 0.43591 2.45398 3.10259 3.16976 3.17633 3.25181
3.27494 3.36937 3.62591 3.98033 4.05237 4.20799 4.34321 4.57016
4.90435 5.06634 5.16463 5.20927 5.28959 5.44988 5.51178 5.57466
5.70255 5.86575 6.01145 6.22580 6.36047 6.63076 6.71708 6.76815
7.15026 7.24178 7.65945 7.87273 7.95559 8.39138 8.57972 9.23100
9.34357 10.70976
Molecular weight = 315.09amu
Principal moments of inertia in cm(-1)
A = 0.023981 B = 0.003653 C = 0.003349
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1167.324779 B = 7662.132329 C = 8358.466257
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.071 3.929
3 Si 0.905 3.095
4 H -0.277 1.277
5 H -0.284 1.284
6 H -0.272 1.272
7 C -0.539 4.539
8 H 0.068 0.932
9 C 0.249 3.751
10 O -0.586 6.586
11 C -0.118 4.118
12 C 0.094 3.906
13 N -0.599 5.599
14 C 0.562 3.438
15 O -0.527 6.527
16 C -0.135 4.135
17 C -0.068 4.068
18 C 0.054 3.946
19 F -0.120 7.120
20 C 0.115 3.885
21 F -0.118 7.118
22 C -0.172 4.172
23 C 0.174 3.826
24 F -0.105 7.105
25 C 0.101 3.899
26 H 0.272 0.728
27 H 0.387 0.613
28 H 0.080 0.920
29 H 0.078 0.922
30 H 0.069 0.931
31 H 0.065 0.935
32 H 0.168 0.832
33 H 0.165 0.835
34 H 0.071 0.929
35 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.260 -15.616 4.486 16.296
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.132 4.132
3 Si 0.732 3.268
4 H -0.203 1.203
5 H -0.209 1.209
6 H -0.197 1.197
7 C -0.577 4.577
8 H 0.086 0.914
9 C 0.209 3.791
10 O -0.396 6.396
11 C -0.156 4.156
12 C -0.029 4.029
13 N -0.331 5.331
14 C 0.348 3.652
15 O -0.405 6.405
16 C -0.139 4.139
17 C -0.088 4.088
18 C 0.034 3.966
19 F -0.099 7.099
20 C 0.094 3.906
21 F -0.096 7.096
22 C -0.192 4.192
23 C 0.153 3.847
24 F -0.083 7.083
25 C -0.020 4.020
26 H 0.082 0.918
27 H 0.239 0.761
28 H 0.098 0.902
29 H 0.097 0.903
30 H 0.087 0.913
31 H 0.084 0.916
32 H 0.185 0.815
33 H 0.183 0.817
34 H 0.089 0.911
35 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 1.117 -15.709 4.872 16.485
hybrid contribution 0.048 1.078 0.205 1.098
sum 1.165 -14.631 5.076 15.530
Atomic orbital electron populations
1.69559 1.06054 1.28138 1.49780 1.25074 0.95060 0.99870 0.93196
0.86372 0.79807 0.82253 0.78332 1.20323 1.20939 1.19655 1.21519
0.93779 0.90021 1.52401 0.91379 1.19474 0.85830 0.92216 0.81615
1.86072 1.51474 1.53480 1.48576 1.22782 0.97723 0.94598 1.00474
1.22577 0.94043 0.96124 0.90140 1.48719 1.51182 1.12668 1.20570
1.17357 0.80413 0.85566 0.81844 1.90841 1.44381 1.62808 1.42488
1.20128 1.06020 0.95747 0.92044 1.21387 0.96546 0.89947 1.00870
1.17400 1.08026 0.88244 0.82944 1.91572 1.93745 1.70392 1.54165
1.17379 1.02793 0.78219 0.92177 1.91575 1.93291 1.28854 1.95867
1.20872 1.06869 0.91130 1.00326 1.17205 0.97534 0.86848 0.83130
1.91637 1.92283 1.70956 1.53455 1.23176 1.02044 0.76936 0.99867
0.91798 0.76065 0.90151 0.90306 0.91254 0.91620 0.81512 0.81740
0.91084 0.91327
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -23.02 10.98 55.43 0.61 -22.41 16
2 C 0.07 1.79 5.28 -17.82 -0.09 1.70 16
3 Si 0.91 19.87 29.54 -169.99 -5.02 14.85 16
4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16
5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16
7 C -0.54 -13.50 8.11 -34.44 -0.28 -13.78 16
8 H 0.07 1.68 7.76 -52.49 -0.41 1.27 16
9 C 0.25 5.69 0.86 -89.94 -0.08 5.61 16
10 O -0.59 -13.96 13.09 -35.23 -0.46 -14.42 16
11 C -0.12 -2.17 6.22 -24.58 -0.15 -2.32 16
12 C 0.09 1.49 5.20 -2.50 -0.01 1.47 16
13 N -0.60 -11.43 3.33 -171.70 -0.57 -12.00 16
14 C 0.56 10.56 7.39 -12.46 -0.09 10.47 16
15 O -0.53 -11.87 16.45 5.29 0.09 -11.78 16
16 C -0.13 -1.93 5.42 -104.91 -0.57 -2.50 16
17 C -0.07 -0.81 8.15 -39.13 -0.32 -1.13 16
18 C 0.05 0.60 7.29 -39.43 -0.29 0.31 16
19 F -0.12 -1.37 17.17 2.25 0.04 -1.33 16
20 C 0.12 1.18 7.31 -39.24 -0.29 0.89 16
21 F -0.12 -1.22 17.17 2.25 0.04 -1.18 16
22 C -0.17 -1.69 9.99 -39.51 -0.39 -2.09 16
23 C 0.17 2.25 7.24 -38.98 -0.28 1.96 16
24 F -0.11 -1.57 16.13 2.25 0.04 -1.54 16
25 C 0.10 2.30 5.55 -3.07 -0.02 2.28 16
26 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16
27 H 0.39 9.60 6.98 45.56 0.32 9.92 16
28 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16
29 H 0.08 1.40 8.03 -51.93 -0.42 0.99 16
30 H 0.07 1.01 6.90 -51.93 -0.36 0.66 16
31 H 0.07 0.85 7.27 -51.93 -0.38 0.48 16
32 H 0.17 1.87 5.74 -52.49 -0.30 1.56 16
33 H 0.17 1.17 8.06 -52.49 -0.42 0.74 16
34 H 0.07 1.77 7.82 -51.93 -0.41 1.37 16
35 H 0.07 1.70 8.07 -51.93 -0.42 1.28 16
LS Contribution 312.25 15.07 4.71 4.71
Total: -1.00 -27.91 312.25 -5.75 -33.66
By element:
Atomic # 1 Polarization: 10.92 SS G_CDS: -2.35 Total: 8.57 kcal
Atomic # 6 Polarization: 5.75 SS G_CDS: -2.86 Total: 2.88 kcal
Atomic # 7 Polarization: -34.45 SS G_CDS: 0.04 Total: -34.41 kcal
Atomic # 8 Polarization: -25.83 SS G_CDS: -0.37 Total: -26.21 kcal
Atomic # 9 Polarization: -4.16 SS G_CDS: 0.11 Total: -4.05 kcal
Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal
Total LS contribution 4.71 Total: 4.71 kcal
Total: -27.91 -5.75 -33.66 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592846034.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -148.981 kcal
(2) G-P(sol) polarization free energy of solvation -27.908 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.889 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.751 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.659 kcal
(6) G-S(sol) free energy of system = (1) + (5) -182.640 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds