Wall clock time and date at job start Tue Mar 31 2020 11:24:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86799 * 120.00440 * 2 1
4 4 H 1.48501 * 109.47255 * 270.00015 * 3 2 1
5 5 H 1.48498 * 109.46955 * 29.99907 * 3 2 1
6 6 H 1.48502 * 109.47289 * 149.99850 * 3 2 1
7 7 C 1.37883 * 119.99674 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00089 * 179.97438 * 7 2 1
9 9 C 1.50701 * 119.99976 * 0.02562 * 7 2 1
10 10 O 1.42899 * 110.64037 * 56.86080 * 9 7 2
11 11 C 1.55160 * 110.71875 * 179.97438 * 9 7 2
12 12 C 1.54906 * 101.61342 * 154.02462 * 11 9 7
13 13 N 1.47472 * 104.81337 * 323.04345 * 12 11 9
14 14 C 1.34774 * 125.63102 * 204.04970 * 13 12 11
15 15 O 1.21583 * 120.00109 * 174.72281 * 14 13 12
16 16 C 1.47568 * 119.99924 * 354.72593 * 14 13 12
17 17 C 1.39754 * 120.13254 * 323.60744 * 16 14 13
18 18 C 1.37929 * 119.87439 * 179.78567 * 17 16 14
19 19 F 1.35091 * 119.92363 * 180.23000 * 18 17 16
20 20 C 1.38944 * 120.14375 * 0.47062 * 18 17 16
21 21 F 1.35099 * 119.86049 * 179.75959 * 20 18 17
22 22 C 1.38452 * 120.27104 * 359.78132 * 20 18 17
23 23 C 1.38214 * 120.11782 * 359.97438 * 22 20 18
24 24 F 1.35100 * 120.06761 * 180.02562 * 23 22 20
25 25 C 1.47023 * 108.72007 * 24.06942 * 13 12 11
26 26 H 0.96998 * 119.99612 * 0.02562 * 1 2 3
27 27 H 0.96701 * 114.00029 * 303.14020 * 10 9 7
28 28 H 1.08994 * 111.00720 * 272.11730 * 11 9 7
29 29 H 1.09004 * 110.99823 * 35.93395 * 11 9 7
30 30 H 1.09000 * 110.37097 * 81.85269 * 12 11 9
31 31 H 1.09001 * 110.36644 * 204.17435 * 12 11 9
32 32 H 1.07990 * 120.06207 * 0.02617 * 17 16 14
33 33 H 1.07994 * 119.93724 * 179.97438 * 22 20 18
34 34 H 1.08994 * 109.88449 * 239.55800 * 25 13 12
35 35 H 1.08999 * 109.87881 * 118.39185 * 25 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4968 2.0464 -1.4001
5 1 1.4467 2.6526 0.7000
6 1 3.5468 1.4400 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0001
9 6 1.2509 -2.4992 0.0005
10 8 0.3663 -2.5701 -1.1195
11 6 2.2332 -3.7003 0.0005
12 6 1.3747 -4.8052 0.6651
13 7 0.5902 -4.1032 1.6979
14 6 0.0649 -4.6673 2.8034
15 8 -0.4839 -3.9737 3.6377
16 6 0.1557 -6.1268 3.0013
17 6 0.0461 -6.9912 1.9086
18 6 0.1362 -8.3542 2.0991
19 9 0.0351 -9.1904 1.0430
20 6 0.3258 -8.8693 3.3756
21 9 0.4084 -10.2057 3.5562
22 6 0.4299 -8.0188 4.4630
23 6 0.3463 -6.6508 4.2841
24 9 0.4485 -5.8218 5.3459
25 6 0.4758 -2.6865 1.3217
26 1 -0.4849 0.8401 -0.0004
27 1 -0.2682 -1.8419 -1.1663
28 1 2.5096 -3.9789 -1.0163
29 1 3.1183 -3.4810 0.5977
30 1 0.7114 -5.2631 -0.0687
31 1 2.0150 -5.5599 1.1219
32 1 -0.1050 -6.5924 0.9165
33 1 0.5768 -8.4250 5.4528
34 1 0.9122 -2.0600 2.0996
35 1 -0.5724 -2.4250 1.1769
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592846034.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:24:20
Heat of formation + Delta-G solvation = -200.810674 kcal
Electronic energy + Delta-G solvation = -26379.374936 eV
Core-core repulsion = 21927.535960 eV
Total energy + Delta-G solvation = -4451.838975 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.087 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-50.72105 -50.24178 -49.77921 -41.49283 -39.62930 -38.77174 -36.21473 -34.17641
-32.93030 -31.69665 -31.25415 -29.63180 -27.30277 -25.65024 -24.38692 -23.84473
-21.55383 -21.07227 -19.46309 -19.31777 -19.12186 -18.68980 -17.88417 -17.68898
-17.36549 -16.99198 -16.80352 -16.53993 -16.21168 -16.14511 -16.00115 -15.80642
-15.45713 -14.86328 -14.81697 -14.74676 -14.65213 -13.80951 -13.62909 -13.50023
-13.41387 -12.97984 -12.91559 -12.85134 -12.53147 -12.31189 -12.27144 -12.10751
-11.30209 -11.21569 -10.65128 -10.47579 -10.30585 -9.96423 -9.67558 -8.28804
-6.44112 -0.84429 -0.44998 1.30828 1.41101 1.44036 1.52826 1.77496
2.03185 2.32199 2.37615 2.68533 2.98029 3.04220 3.06077 3.26213
3.64566 3.76954 4.03592 4.10108 4.20972 4.26881 4.29893 4.42002
4.49379 4.61080 4.63920 4.66629 4.96838 5.08752 5.16828 5.32185
5.35074 5.46651 5.73984 6.01950 6.43837 6.63098 6.90207 7.28160
7.37717 8.77381
Molecular weight = 315.09amu
Principal moments of inertia in cm(-1)
A = 0.023981 B = 0.003653 C = 0.003349
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1167.324779 B = 7662.132329 C = 8358.466257
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.917 5.917
2 C 0.027 3.973
3 Si 0.962 3.038
4 H -0.272 1.272
5 H -0.286 1.286
6 H -0.268 1.268
7 C -0.559 4.559
8 H 0.068 0.932
9 C 0.235 3.765
10 O -0.587 6.587
11 C -0.114 4.114
12 C 0.098 3.902
13 N -0.603 5.603
14 C 0.559 3.441
15 O -0.577 6.577
16 C -0.150 4.150
17 C -0.057 4.057
18 C 0.062 3.938
19 F -0.119 7.119
20 C 0.130 3.870
21 F -0.112 7.112
22 C -0.147 4.147
23 C 0.164 3.836
24 F -0.122 7.122
25 C 0.117 3.883
26 H 0.271 0.729
27 H 0.379 0.621
28 H 0.095 0.905
29 H 0.083 0.917
30 H 0.088 0.912
31 H 0.104 0.896
32 H 0.174 0.826
33 H 0.198 0.802
34 H 0.037 0.963
35 H 0.036 0.964
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.406 -18.195 4.447 18.885
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.557 5.557
2 C -0.173 4.173
3 Si 0.787 3.213
4 H -0.197 1.197
5 H -0.212 1.212
6 H -0.193 1.193
7 C -0.597 4.597
8 H 0.086 0.914
9 C 0.194 3.806
10 O -0.396 6.396
11 C -0.151 4.151
12 C -0.023 4.023
13 N -0.334 5.334
14 C 0.349 3.651
15 O -0.458 6.458
16 C -0.154 4.154
17 C -0.076 4.076
18 C 0.042 3.958
19 F -0.098 7.098
20 C 0.110 3.890
21 F -0.090 7.090
22 C -0.166 4.166
23 C 0.143 3.857
24 F -0.100 7.100
25 C -0.006 4.006
26 H 0.081 0.919
27 H 0.230 0.770
28 H 0.114 0.886
29 H 0.102 0.898
30 H 0.106 0.894
31 H 0.122 0.878
32 H 0.192 0.808
33 H 0.215 0.785
34 H 0.055 0.945
35 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 2.288 -18.333 4.811 19.091
hybrid contribution -0.324 1.789 0.232 1.833
sum 1.963 -16.544 5.043 17.406
Atomic orbital electron populations
1.69660 1.07071 1.28595 1.50342 1.25783 0.95779 1.02743 0.93032
0.85488 0.78658 0.78748 0.78371 1.19734 1.21190 1.19272 1.21877
0.94064 0.91397 1.52329 0.91364 1.19676 0.86350 0.93574 0.81003
1.86059 1.51451 1.53008 1.49089 1.22781 0.97135 0.93334 1.01876
1.22779 0.94129 0.95706 0.89731 1.48723 1.51754 1.11362 1.21587
1.18020 0.78994 0.87437 0.80691 1.90803 1.46331 1.64591 1.44054
1.19694 1.09276 0.92825 0.93650 1.21269 0.96030 0.90017 1.00326
1.17307 1.07543 0.87751 0.83206 1.91586 1.93686 1.70228 1.54278
1.17353 1.01473 0.78359 0.91864 1.91605 1.93061 1.28547 1.95805
1.21018 1.04540 0.89309 1.01701 1.17389 0.98317 0.87822 0.82151
1.91600 1.92558 1.71738 1.54103 1.22657 0.99656 0.79088 0.99157
0.91915 0.77009 0.88640 0.89832 0.89443 0.87783 0.80831 0.78503
0.94455 0.94522
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -48.66 10.98 21.45 0.24 -48.42 16
2 C 0.03 1.40 5.28 84.66 0.45 1.85 16
3 Si 0.96 41.22 29.54 68.60 2.03 43.25 16
4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16
5 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16
6 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16
7 C -0.56 -28.41 8.11 25.60 0.21 -28.20 16
8 H 0.07 3.38 7.76 -2.91 -0.02 3.35 16
9 C 0.23 10.84 0.86 -10.35 -0.01 10.83 16
10 O -0.59 -28.36 13.09 -148.98 -1.95 -30.31 16
11 C -0.11 -4.02 6.22 31.99 0.20 -3.82 16
12 C 0.10 2.89 5.20 86.84 0.45 3.34 16
13 N -0.60 -23.12 3.33 -815.41 -2.71 -25.83 16
14 C 0.56 21.26 7.39 86.71 0.64 21.90 16
15 O -0.58 -27.07 16.45 -3.98 -0.07 -27.14 16
16 C -0.15 -4.08 5.42 -20.05 -0.11 -4.19 16
17 C -0.06 -1.20 8.15 22.56 0.18 -1.02 16
18 C 0.06 1.15 7.29 22.37 0.16 1.31 16
19 F -0.12 -2.29 17.17 44.97 0.77 -1.52 16
20 C 0.13 2.15 7.31 22.49 0.16 2.32 16
21 F -0.11 -1.84 17.17 44.97 0.77 -1.07 16
22 C -0.15 -2.34 9.99 22.32 0.22 -2.11 16
23 C 0.16 3.93 7.24 22.66 0.16 4.10 16
24 F -0.12 -3.57 16.13 44.97 0.73 -2.84 16
25 C 0.12 5.58 5.55 86.73 0.48 6.06 16
26 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16
27 H 0.38 19.45 6.98 -74.06 -0.52 18.94 16
28 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16
29 H 0.08 2.86 8.03 -2.39 -0.02 2.84 16
30 H 0.09 2.31 6.90 -2.39 -0.02 2.29 16
31 H 0.10 2.33 7.27 -2.39 -0.02 2.31 16
32 H 0.17 3.38 5.74 -2.92 -0.02 3.36 16
33 H 0.20 1.87 8.06 -2.91 -0.02 1.85 16
34 H 0.04 1.98 7.82 -2.39 -0.02 1.96 16
35 H 0.04 1.93 8.07 -2.39 -0.02 1.91 16
Total: -1.00 -62.98 312.25 3.67 -59.31
By element:
Atomic # 1 Polarization: 21.55 SS G_CDS: 0.66 Total: 22.21 kcal
Atomic # 6 Polarization: 9.16 SS G_CDS: 3.21 Total: 12.37 kcal
Atomic # 7 Polarization: -71.78 SS G_CDS: -2.48 Total: -74.26 kcal
Atomic # 8 Polarization: -55.43 SS G_CDS: -2.01 Total: -57.45 kcal
Atomic # 9 Polarization: -7.70 SS G_CDS: 2.27 Total: -5.43 kcal
Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal
Total: -62.98 3.67 -59.31 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592846034.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -141.503 kcal
(2) G-P(sol) polarization free energy of solvation -62.979 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.483 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.307 kcal
(6) G-S(sol) free energy of system = (1) + (5) -200.811 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds