Wall clock time and date at job start Tue Mar 31 2020 11:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 120.00323 * 2 1 4 4 H 1.48499 * 109.47006 * 274.99096 * 3 2 1 5 5 H 1.48502 * 109.46769 * 34.98653 * 3 2 1 6 6 H 1.48492 * 109.47076 * 154.98703 * 3 2 1 7 7 C 1.37875 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00093 * 172.61380 * 7 2 1 9 9 C 1.50705 * 119.99782 * 352.61983 * 7 2 1 10 10 O 1.42902 * 110.88500 * 303.64541 * 9 7 2 11 11 C 1.55159 * 111.00351 * 179.77015 * 9 7 2 12 12 C 1.54323 * 102.94011 * 206.38697 * 11 9 7 13 13 N 1.47019 * 107.27297 * 22.19001 * 12 11 9 14 14 C 1.34782 * 125.65045 * 181.02926 * 13 12 11 15 15 O 1.21583 * 120.00190 * 185.08768 * 14 13 12 16 16 C 1.47573 * 119.99417 * 5.08153 * 14 13 12 17 17 C 1.39757 * 120.13579 * 313.21981 * 16 14 13 18 18 C 1.37912 * 119.87736 * 180.21539 * 17 16 14 19 19 F 1.35098 * 119.92957 * 179.79829 * 18 17 16 20 20 C 1.38944 * 120.14705 * 359.51910 * 18 17 16 21 21 F 1.35105 * 119.87134 * 180.25762 * 20 18 17 22 22 C 1.38451 * 120.26759 * 0.27502 * 20 18 17 23 23 C 1.38215 * 120.11772 * 359.96189 * 22 20 18 24 24 F 1.35106 * 120.07213 * 180.02562 * 23 22 20 25 25 C 1.47426 * 108.70259 * 1.28975 * 13 12 11 26 26 H 0.97005 * 119.99711 * 0.02562 * 1 2 3 27 27 H 0.96705 * 113.99681 * 56.12028 * 10 9 7 28 28 H 1.09000 * 110.72310 * 88.02265 * 11 9 7 29 29 H 1.09002 * 110.72040 * 324.74430 * 11 9 7 30 30 H 1.09000 * 109.87989 * 262.77469 * 12 11 9 31 31 H 1.08992 * 110.01432 * 141.68224 * 12 11 9 32 32 H 1.08000 * 120.05695 * 359.97438 * 17 16 14 33 33 H 1.08001 * 119.94408 * 179.97438 * 22 20 18 34 34 H 1.08995 * 110.36384 * 94.48289 * 25 13 12 35 35 H 1.09004 * 110.36584 * 216.80502 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3913 2.1073 -1.3948 5 1 1.5033 2.6200 0.8028 6 1 3.5954 1.4120 0.5920 7 6 2.0045 -1.1940 0.0005 8 1 3.0778 -1.1979 -0.1197 9 6 1.2603 -2.4937 0.1688 10 8 0.4944 -2.4897 1.3752 11 6 2.2343 -3.7009 0.1324 12 6 1.3372 -4.8538 -0.3652 13 7 0.1995 -4.2478 -1.0722 14 6 -0.8217 -4.9204 -1.6391 15 8 -1.6636 -4.3208 -2.2793 16 6 -0.9177 -6.3846 -1.4828 17 6 0.2078 -7.1874 -1.6874 18 6 0.1110 -8.5557 -1.5442 19 9 1.1973 -9.3331 -1.7458 20 6 -1.1000 -9.1360 -1.1875 21 9 -1.1873 -10.4765 -1.0437 22 6 -2.2178 -8.3461 -0.9791 23 6 -2.1344 -6.9741 -1.1243 24 9 -3.2257 -6.2042 -0.9203 25 6 0.3638 -2.7827 -1.0638 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1286 -1.7532 1.4431 28 1 2.6203 -3.9152 1.1289 29 1 3.0499 -3.5176 -0.5671 30 1 0.9785 -5.4369 0.4830 31 1 1.8972 -5.4953 -1.0455 32 1 1.1507 -6.7374 -1.9609 33 1 -3.1566 -8.8027 -0.7024 34 1 0.8543 -2.4508 -1.9788 35 1 -0.6036 -2.2931 -0.9518 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846035.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:23 Heat of formation + Delta-G solvation = -181.830413 kcal Electronic energy + Delta-G solvation = -26419.342768 eV Core-core repulsion = 21968.326839 eV Total energy + Delta-G solvation = -4451.015929 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.84601 -49.15638 -48.90469 -40.06813 -38.37367 -37.16905 -34.46505 -32.26469 -31.78599 -30.53846 -29.99490 -27.93818 -25.59811 -24.41621 -23.32891 -22.45931 -19.93768 -19.65062 -18.51610 -18.22220 -17.61774 -17.25984 -16.84792 -16.60205 -15.87714 -15.64247 -15.34612 -15.28962 -15.20605 -14.90229 -14.81393 -14.49986 -14.35238 -13.77998 -13.29073 -13.16822 -12.93239 -12.55551 -12.30596 -11.99380 -11.92226 -11.70895 -11.57758 -11.09113 -10.86255 -10.69603 -10.56473 -10.28645 -9.78239 -9.54452 -9.44686 -8.94287 -8.79290 -8.48625 -7.95901 -6.36093 -4.45692 0.19873 0.45339 2.50313 3.03078 3.15987 3.18338 3.24886 3.27937 3.41625 3.65398 3.99666 4.05934 4.20196 4.38184 4.59440 4.89581 5.09339 5.18166 5.20231 5.27517 5.47376 5.51046 5.57782 5.70213 5.90153 6.04258 6.24121 6.38304 6.61183 6.74162 6.80176 7.15006 7.23480 7.66539 7.89422 7.96902 8.41579 8.57998 9.23629 9.28860 10.70540 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.025328 B = 0.003634 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.216587 B = 7703.423158 C = 8331.353966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.582 6.582 11 C -0.118 4.118 12 C 0.097 3.903 13 N -0.597 5.597 14 C 0.564 3.436 15 O -0.527 6.527 16 C -0.130 4.130 17 C -0.071 4.071 18 C 0.056 3.944 19 F -0.121 7.121 20 C 0.112 3.888 21 F -0.118 7.118 22 C -0.169 4.169 23 C 0.171 3.829 24 F -0.107 7.107 25 C 0.095 3.905 26 H 0.271 0.729 27 H 0.384 0.616 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.066 0.934 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.358 -15.664 -1.576 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.580 4.580 8 H 0.087 0.913 9 C 0.209 3.791 10 O -0.391 6.391 11 C -0.156 4.156 12 C -0.026 4.026 13 N -0.329 5.329 14 C 0.350 3.650 15 O -0.405 6.405 16 C -0.134 4.134 17 C -0.091 4.091 18 C 0.036 3.964 19 F -0.100 7.100 20 C 0.092 3.908 21 F -0.096 7.096 22 C -0.189 4.189 23 C 0.150 3.850 24 F -0.085 7.085 25 C -0.026 4.026 26 H 0.081 0.919 27 H 0.234 0.766 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.183 0.817 33 H 0.183 0.817 34 H 0.084 0.916 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.672 -15.824 -1.817 15.942 hybrid contribution 0.054 1.048 -0.137 1.058 sum -0.619 -14.776 -1.954 14.917 Atomic orbital electron populations 1.69714 1.06020 1.28080 1.49165 1.25084 0.95021 0.99866 0.93181 0.86389 0.79951 0.82412 0.78185 1.20484 1.20867 1.19583 1.21470 0.94440 0.90194 1.51856 0.91332 1.19634 0.86557 0.91871 0.81067 1.86091 1.57719 1.54004 1.41263 1.22646 0.97455 0.94163 1.01293 1.22240 0.87693 0.97093 0.95529 1.48717 1.21318 1.10198 1.52658 1.17334 0.81956 0.84981 0.80755 1.90837 1.40276 1.68772 1.40628 1.20124 0.92604 0.95952 1.04732 1.21251 0.99731 0.90424 0.97658 1.17378 0.83140 0.89008 1.06924 1.91567 1.51599 1.74054 1.92737 1.17353 0.92958 0.78103 1.02415 1.91574 1.96674 1.28397 1.92983 1.20874 0.99939 0.91728 1.06335 1.17183 0.82861 0.87631 0.97300 1.91637 1.50947 1.74554 1.91353 1.23487 1.03107 0.75007 1.01018 0.91859 0.76551 0.90411 0.90164 0.91793 0.92407 0.81723 0.81721 0.91610 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.00 10.74 55.43 0.60 -22.40 16 2 C 0.07 1.81 5.25 -17.82 -0.09 1.71 16 3 Si 0.90 19.66 29.54 -169.99 -5.02 14.64 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.54 -13.43 8.24 -34.44 -0.28 -13.72 16 8 H 0.07 1.66 7.78 -52.49 -0.41 1.25 16 9 C 0.25 5.71 0.89 -89.50 -0.08 5.63 16 10 O -0.58 -14.19 13.19 -35.23 -0.46 -14.65 16 11 C -0.12 -2.15 6.12 -24.90 -0.15 -2.30 16 12 C 0.10 1.56 5.62 -3.07 -0.02 1.54 16 13 N -0.60 -11.54 3.32 -171.60 -0.57 -12.11 16 14 C 0.56 10.79 7.19 -12.45 -0.09 10.70 16 15 O -0.53 -12.05 16.85 5.29 0.09 -11.96 16 16 C -0.13 -1.90 5.44 -104.91 -0.57 -2.47 16 17 C -0.07 -0.84 8.49 -39.13 -0.33 -1.17 16 18 C 0.06 0.62 7.29 -39.44 -0.29 0.33 16 19 F -0.12 -1.36 17.17 2.25 0.04 -1.32 16 20 C 0.11 1.19 7.31 -39.24 -0.29 0.90 16 21 F -0.12 -1.25 17.17 2.25 0.04 -1.21 16 22 C -0.17 -1.74 9.99 -39.51 -0.39 -2.14 16 23 C 0.17 2.32 7.25 -38.98 -0.28 2.03 16 24 F -0.11 -1.68 16.45 2.25 0.04 -1.64 16 25 C 0.09 2.15 5.52 -2.41 -0.01 2.14 16 26 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.38 9.71 7.23 45.56 0.33 10.03 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.36 8.02 -51.93 -0.42 0.94 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.73 5.94 -51.93 -0.31 0.42 16 32 H 0.17 1.71 5.85 -52.49 -0.31 1.40 16 33 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.07 1.53 8.04 -51.93 -0.42 1.11 16 35 H 0.09 2.28 7.51 -51.93 -0.39 1.89 16 LS Contribution 313.38 15.07 4.72 4.72 Total: -1.00 -28.15 313.38 -5.74 -33.89 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -2.32 Total: 8.86 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -2.88 Total: 3.19 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.02 Total: -34.51 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.38 Total: -26.61 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.11 Total: -4.17 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.15 -5.74 -33.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846035.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.936 kcal (2) G-P(sol) polarization free energy of solvation -28.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds