Wall clock time and date at job start Tue Mar 31 2020 11:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 120.00323 * 2 1 4 4 H 1.48499 * 109.47006 * 274.99096 * 3 2 1 5 5 H 1.48502 * 109.46769 * 34.98653 * 3 2 1 6 6 H 1.48492 * 109.47076 * 154.98703 * 3 2 1 7 7 C 1.37875 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00093 * 172.61380 * 7 2 1 9 9 C 1.50705 * 119.99782 * 352.61983 * 7 2 1 10 10 O 1.42902 * 110.88500 * 303.64541 * 9 7 2 11 11 C 1.55159 * 111.00351 * 179.77015 * 9 7 2 12 12 C 1.54323 * 102.94011 * 206.38697 * 11 9 7 13 13 N 1.47019 * 107.27297 * 22.19001 * 12 11 9 14 14 C 1.34782 * 125.65045 * 181.02926 * 13 12 11 15 15 O 1.21583 * 120.00190 * 185.08768 * 14 13 12 16 16 C 1.47573 * 119.99417 * 5.08153 * 14 13 12 17 17 C 1.39757 * 120.13579 * 313.21981 * 16 14 13 18 18 C 1.37912 * 119.87736 * 180.21539 * 17 16 14 19 19 F 1.35098 * 119.92957 * 179.79829 * 18 17 16 20 20 C 1.38944 * 120.14705 * 359.51910 * 18 17 16 21 21 F 1.35105 * 119.87134 * 180.25762 * 20 18 17 22 22 C 1.38451 * 120.26759 * 0.27502 * 20 18 17 23 23 C 1.38215 * 120.11772 * 359.96189 * 22 20 18 24 24 F 1.35106 * 120.07213 * 180.02562 * 23 22 20 25 25 C 1.47426 * 108.70259 * 1.28975 * 13 12 11 26 26 H 0.97005 * 119.99711 * 0.02562 * 1 2 3 27 27 H 0.96705 * 113.99681 * 56.12028 * 10 9 7 28 28 H 1.09000 * 110.72310 * 88.02265 * 11 9 7 29 29 H 1.09002 * 110.72040 * 324.74430 * 11 9 7 30 30 H 1.09000 * 109.87989 * 262.77469 * 12 11 9 31 31 H 1.08992 * 110.01432 * 141.68224 * 12 11 9 32 32 H 1.08000 * 120.05695 * 359.97438 * 17 16 14 33 33 H 1.08001 * 119.94408 * 179.97438 * 22 20 18 34 34 H 1.08995 * 110.36384 * 94.48289 * 25 13 12 35 35 H 1.09004 * 110.36584 * 216.80502 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3913 2.1073 -1.3948 5 1 1.5033 2.6200 0.8028 6 1 3.5954 1.4120 0.5920 7 6 2.0045 -1.1940 0.0005 8 1 3.0778 -1.1979 -0.1197 9 6 1.2603 -2.4937 0.1688 10 8 0.4944 -2.4897 1.3752 11 6 2.2343 -3.7009 0.1324 12 6 1.3372 -4.8538 -0.3652 13 7 0.1995 -4.2478 -1.0722 14 6 -0.8217 -4.9204 -1.6391 15 8 -1.6636 -4.3208 -2.2793 16 6 -0.9177 -6.3846 -1.4828 17 6 0.2078 -7.1874 -1.6874 18 6 0.1110 -8.5557 -1.5442 19 9 1.1973 -9.3331 -1.7458 20 6 -1.1000 -9.1360 -1.1875 21 9 -1.1873 -10.4765 -1.0437 22 6 -2.2178 -8.3461 -0.9791 23 6 -2.1344 -6.9741 -1.1243 24 9 -3.2257 -6.2042 -0.9203 25 6 0.3638 -2.7827 -1.0638 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1286 -1.7532 1.4431 28 1 2.6203 -3.9152 1.1289 29 1 3.0499 -3.5176 -0.5671 30 1 0.9785 -5.4369 0.4830 31 1 1.8972 -5.4953 -1.0455 32 1 1.1507 -6.7374 -1.9609 33 1 -3.1566 -8.8027 -0.7024 34 1 0.8543 -2.4508 -1.9788 35 1 -0.6036 -2.2931 -0.9518 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846035.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:23 Heat of formation + Delta-G solvation = -200.322223 kcal Electronic energy + Delta-G solvation = -26420.144633 eV Core-core repulsion = 21968.326839 eV Total energy + Delta-G solvation = -4451.817794 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.71720 -50.26842 -49.77671 -41.45465 -39.61819 -38.73724 -36.18777 -34.19624 -32.92725 -31.76021 -31.24800 -29.58780 -27.29130 -25.64026 -24.41821 -23.78345 -21.52829 -21.07249 -19.48669 -19.37584 -19.00712 -18.77923 -17.94494 -17.64100 -17.22364 -16.95517 -16.77441 -16.57685 -16.33477 -16.15152 -16.00511 -15.86552 -15.44630 -15.00548 -14.83744 -14.67479 -14.56325 -13.81133 -13.59375 -13.54519 -13.32731 -12.97617 -12.93080 -12.82601 -12.50357 -12.31653 -12.24497 -12.08313 -11.29317 -11.18980 -10.70300 -10.49464 -10.32041 -9.93259 -9.56964 -8.26262 -6.42689 -0.79944 -0.44940 1.30040 1.42159 1.45940 1.55607 1.75298 2.03875 2.32938 2.38942 2.69144 2.99454 3.03859 3.06007 3.28660 3.66128 3.75023 4.05743 4.07218 4.19635 4.24113 4.33005 4.41065 4.51267 4.61371 4.69031 4.73463 5.01785 5.07062 5.22677 5.31803 5.39166 5.44558 5.75244 6.02686 6.46313 6.65568 6.91634 7.28091 7.32731 8.78718 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.025328 B = 0.003634 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.216587 B = 7703.423158 C = 8331.353966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.027 3.973 3 Si 0.963 3.037 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.557 4.557 8 H 0.073 0.927 9 C 0.232 3.768 10 O -0.587 6.587 11 C -0.112 4.112 12 C 0.098 3.902 13 N -0.601 5.601 14 C 0.561 3.439 15 O -0.578 6.578 16 C -0.147 4.147 17 C -0.058 4.058 18 C 0.066 3.934 19 F -0.118 7.118 20 C 0.126 3.874 21 F -0.113 7.113 22 C -0.146 4.146 23 C 0.155 3.845 24 F -0.126 7.126 25 C 0.107 3.893 26 H 0.270 0.730 27 H 0.375 0.625 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.181 0.819 33 H 0.196 0.804 34 H 0.052 0.948 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 -18.146 -1.378 18.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.173 4.173 3 Si 0.788 3.212 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.595 4.595 8 H 0.091 0.909 9 C 0.191 3.809 10 O -0.395 6.395 11 C -0.150 4.150 12 C -0.024 4.024 13 N -0.332 5.332 14 C 0.349 3.651 15 O -0.459 6.459 16 C -0.151 4.151 17 C -0.077 4.077 18 C 0.045 3.955 19 F -0.096 7.096 20 C 0.105 3.895 21 F -0.091 7.091 22 C -0.165 4.165 23 C 0.135 3.865 24 F -0.105 7.105 25 C -0.015 4.015 26 H 0.079 0.921 27 H 0.224 0.776 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.198 0.802 33 H 0.213 0.787 34 H 0.070 0.930 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.875 -18.349 -1.604 18.440 hybrid contribution -0.416 1.726 -0.207 1.788 sum 0.458 -16.623 -1.811 16.727 Atomic orbital electron populations 1.69839 1.07227 1.28476 1.50003 1.25813 0.95656 1.02854 0.93025 0.85465 0.78940 0.78804 0.77952 1.20420 1.21046 1.18831 1.21834 0.94815 0.91336 1.51543 0.90923 1.19900 0.87206 0.93444 0.80320 1.86083 1.57689 1.53522 1.42227 1.22664 0.97137 0.92635 1.02576 1.22463 0.86495 0.96617 0.96796 1.48737 1.22623 1.08860 1.52964 1.17976 0.80793 0.86865 0.79456 1.90798 1.41922 1.70457 1.42735 1.19733 0.94402 0.93120 1.07843 1.21211 0.99232 0.90474 0.96791 1.17279 0.83293 0.88605 1.06285 1.91588 1.51540 1.73855 1.92641 1.17342 0.92706 0.78206 1.01254 1.91602 1.96623 1.28072 1.92776 1.21005 1.01120 0.89983 1.04390 1.17425 0.82008 0.88701 0.98409 1.91590 1.51830 1.75324 1.91714 1.23015 1.00593 0.77350 1.00563 0.92103 0.77617 0.89371 0.88670 0.90471 0.87953 0.80155 0.78697 0.92995 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.02 10.74 21.45 0.23 -48.79 16 2 C 0.03 1.40 5.25 84.65 0.44 1.84 16 3 Si 0.96 40.65 29.54 68.60 2.03 42.68 16 4 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.56 -27.82 8.24 25.60 0.21 -27.61 16 8 H 0.07 3.48 7.78 -2.91 -0.02 3.45 16 9 C 0.23 10.70 0.89 -10.07 -0.01 10.69 16 10 O -0.59 -29.24 13.19 -148.98 -1.97 -31.20 16 11 C -0.11 -3.90 6.12 31.78 0.19 -3.71 16 12 C 0.10 2.89 5.62 86.73 0.49 3.38 16 13 N -0.60 -23.24 3.32 -815.08 -2.71 -25.95 16 14 C 0.56 21.73 7.19 86.71 0.62 22.36 16 15 O -0.58 -27.66 16.85 -3.98 -0.07 -27.72 16 16 C -0.15 -4.12 5.44 -20.05 -0.11 -4.23 16 17 C -0.06 -1.19 8.49 22.56 0.19 -1.00 16 18 C 0.07 1.21 7.29 22.36 0.16 1.37 16 19 F -0.12 -2.18 17.17 44.97 0.77 -1.41 16 20 C 0.13 2.18 7.31 22.49 0.16 2.35 16 21 F -0.11 -1.93 17.17 44.97 0.77 -1.16 16 22 C -0.15 -2.55 9.99 22.31 0.22 -2.32 16 23 C 0.16 4.00 7.25 22.66 0.16 4.16 16 24 F -0.13 -3.99 16.45 44.97 0.74 -3.25 16 25 C 0.11 5.07 5.52 86.93 0.48 5.55 16 26 H 0.27 13.88 8.31 -92.70 -0.77 13.11 16 27 H 0.37 19.80 7.23 -74.05 -0.54 19.27 16 28 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.09 2.99 8.02 -2.39 -0.02 2.98 16 30 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.10 2.14 5.94 -2.39 -0.01 2.13 16 32 H 0.18 3.04 5.85 -2.91 -0.02 3.02 16 33 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.05 2.53 8.04 -2.39 -0.02 2.51 16 35 H 0.04 2.47 7.51 -2.39 -0.02 2.45 16 Total: -1.00 -63.89 313.38 3.67 -60.22 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.64 Total: 23.76 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 3.23 Total: 12.82 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -2.48 Total: -74.74 kcal Atomic # 8 Polarization: -56.89 SS G_CDS: -2.03 Total: -58.92 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 2.28 Total: -5.82 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -63.89 3.67 -60.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846035.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.099 kcal (2) G-P(sol) polarization free energy of solvation -63.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds