Wall clock time and date at job start Tue Mar 31 2020 11:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00041 * 2 1 4 4 H 1.48503 * 109.46647 * 239.99772 * 3 2 1 5 5 H 1.48493 * 109.47247 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47098 * 119.99961 * 3 2 1 7 7 C 1.37871 * 119.99458 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00404 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.88754 * 59.29708 * 9 7 2 11 11 C 1.55163 * 111.00660 * 183.17791 * 9 7 2 12 12 C 1.54320 * 102.94147 * 153.61367 * 11 9 7 13 13 N 1.47021 * 107.27383 * 337.80980 * 12 11 9 14 14 C 1.34775 * 125.65167 * 178.90894 * 13 12 11 15 15 O 1.21583 * 120.00193 * 180.02562 * 14 13 12 16 16 C 1.47554 * 119.99631 * 0.02562 * 14 13 12 17 17 C 1.39931 * 120.17733 * 269.99711 * 16 14 13 18 18 F 1.35099 * 120.07288 * 0.03014 * 17 16 14 19 19 C 1.38161 * 119.85206 * 180.02562 * 17 16 14 20 20 C 1.38336 * 120.21612 * 0.02562 * 19 17 16 21 21 C 1.38449 * 120.35607 * 0.02562 * 20 19 17 22 22 F 1.35098 * 119.92587 * 179.97438 * 21 20 19 23 23 C 1.38440 * 120.14095 * 359.72014 * 21 20 19 24 24 F 1.35106 * 120.10389 * 180.28174 * 23 21 20 25 25 C 1.47524 * 108.71517 * 358.94187 * 13 12 11 26 26 H 0.97010 * 119.99713 * 0.02562 * 1 2 3 27 27 H 0.96696 * 114.00036 * 300.70269 * 10 9 7 28 28 H 1.09002 * 110.71715 * 271.97869 * 11 9 7 29 29 H 1.08996 * 110.71824 * 35.25310 * 11 9 7 30 30 H 1.09008 * 109.88384 * 97.22443 * 12 11 9 31 31 H 1.09003 * 109.88291 * 218.23509 * 12 11 9 32 32 H 1.08005 * 119.89055 * 180.02562 * 19 17 16 33 33 H 1.07999 * 119.82165 * 180.02562 * 20 19 17 34 34 H 1.09004 * 110.36953 * 265.31028 * 25 13 12 35 35 H 1.09001 * 110.41107 * 142.95306 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 8 0.4062 -2.5998 -1.1478 11 6 2.2253 -3.7040 0.0815 12 6 1.3634 -4.8018 0.7399 13 7 0.2753 -4.1275 1.4630 14 6 -0.7064 -4.7401 2.1540 15 8 -1.5585 -4.0789 2.7154 16 6 -0.7472 -6.2131 2.2292 17 6 -1.4492 -6.9474 1.2669 18 9 -2.0921 -6.3093 0.2646 19 6 -1.4833 -8.3264 1.3441 20 6 -0.8264 -8.9828 2.3695 21 6 -0.1301 -8.2650 3.3268 22 9 0.5079 -8.9148 4.3247 23 6 -0.0818 -6.8830 3.2607 24 9 0.6028 -6.1835 4.1922 25 6 0.4352 -2.6694 1.3064 26 1 -0.4850 0.8402 -0.0004 27 1 -0.2523 -1.8949 -1.2146 28 1 2.5440 -4.0097 -0.9150 29 1 3.0856 -3.4629 0.7058 30 1 0.9490 -5.4571 -0.0263 31 1 1.9700 -5.3820 1.4353 32 1 -2.0247 -8.8939 0.6015 33 1 -0.8570 -10.0610 2.4234 34 1 0.9830 -2.2547 2.1526 35 1 -0.5382 -2.1882 1.2111 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592849343.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:19 Heat of formation + Delta-G solvation = -183.209782 kcal Electronic energy + Delta-G solvation = -26829.014591 eV Core-core repulsion = 22377.938847 eV Total energy + Delta-G solvation = -4451.075743 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.76225 -49.19517 -48.82748 -39.86512 -38.49272 -37.17566 -34.35557 -32.23108 -31.77668 -30.37523 -30.04015 -27.93926 -25.72254 -24.23669 -23.19332 -22.53778 -19.88079 -19.62828 -18.46319 -18.15762 -17.71647 -17.20724 -16.85415 -16.49548 -16.04959 -15.68896 -15.40393 -15.18159 -15.00530 -14.87874 -14.74708 -14.61571 -14.34829 -13.45613 -13.20932 -13.10754 -12.93005 -12.45563 -12.36175 -12.05307 -11.90233 -11.69976 -11.52459 -11.06431 -10.88293 -10.68681 -10.53419 -10.24780 -9.84878 -9.44636 -9.42046 -8.96380 -8.73005 -8.45858 -7.94717 -6.32158 -4.42219 0.31913 0.41722 2.67014 2.71842 3.13959 3.20936 3.26580 3.28115 3.43869 3.70085 4.04578 4.12568 4.23613 4.43010 4.51193 4.94307 5.09801 5.23717 5.31359 5.37077 5.41909 5.56256 5.60338 5.72816 5.95069 6.05645 6.25684 6.41874 6.64304 6.76020 6.80825 7.16786 7.26896 7.70003 7.93940 7.97808 8.39956 8.61387 9.26719 9.36780 10.75201 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.023716 B = 0.003990 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.332544 B = 7015.697013 C = 7366.993160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.251 3.749 10 O -0.582 6.582 11 C -0.116 4.116 12 C 0.101 3.899 13 N -0.592 5.592 14 C 0.568 3.432 15 O -0.526 6.526 16 C -0.156 4.156 17 C 0.156 3.844 18 F -0.111 7.111 19 C -0.136 4.136 20 C -0.086 4.086 21 C 0.056 3.944 22 F -0.122 7.122 23 C 0.129 3.871 24 F -0.109 7.109 25 C 0.093 3.907 26 H 0.272 0.728 27 H 0.384 0.616 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.066 0.934 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.496 -17.657 2.653 17.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.086 0.914 9 C 0.210 3.790 10 O -0.392 6.392 11 C -0.154 4.154 12 C -0.022 4.022 13 N -0.323 5.323 14 C 0.352 3.648 15 O -0.404 6.404 16 C -0.161 4.161 17 C 0.136 3.864 18 F -0.089 7.089 19 C -0.155 4.155 20 C -0.105 4.105 21 C 0.035 3.965 22 F -0.100 7.100 23 C 0.108 3.892 24 F -0.087 7.087 25 C -0.028 4.028 26 H 0.082 0.918 27 H 0.235 0.765 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.178 0.822 33 H 0.178 0.822 34 H 0.084 0.916 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.762 -17.680 2.915 17.935 hybrid contribution 0.212 1.485 0.400 1.553 sum -0.551 -16.194 3.315 16.539 Atomic orbital electron populations 1.69644 1.06040 1.28193 1.49358 1.25083 0.95046 0.99830 0.93203 0.86430 0.79515 0.81956 0.78844 1.19950 1.21041 1.19973 1.21428 0.93688 0.89956 1.52730 0.91412 1.19595 0.86114 0.91741 0.81559 1.86089 1.51480 1.55034 1.46548 1.22626 0.97685 0.94741 1.00349 1.22079 0.88704 0.96437 0.94980 1.48745 1.25024 1.10286 1.48254 1.17163 0.82147 0.85099 0.80357 1.90827 1.38257 1.65111 1.46202 1.20083 1.02727 0.96426 0.96861 1.17334 0.93537 0.89930 0.85638 1.91636 1.78233 1.82048 1.56985 1.21011 1.02252 0.91690 1.00545 1.20974 0.95634 1.01530 0.92338 1.17428 1.00564 0.87978 0.90504 1.91561 1.79597 1.80621 1.58254 1.17240 0.95385 0.87806 0.88810 1.91612 1.76310 1.78563 1.62229 1.23470 1.03111 0.75546 1.00677 0.91787 0.76466 0.90389 0.90165 0.92044 0.92585 0.82237 0.82184 0.91567 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.61 10.69 55.43 0.59 -23.02 16 2 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 3 Si 0.91 20.12 29.54 -169.99 -5.02 15.10 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.54 -13.81 8.26 -34.44 -0.28 -14.09 16 8 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 9 C 0.25 5.98 0.88 -89.62 -0.08 5.90 16 10 O -0.58 -14.69 13.17 -35.23 -0.46 -15.15 16 11 C -0.12 -2.26 6.13 -24.90 -0.15 -2.42 16 12 C 0.10 1.80 6.47 -3.07 -0.02 1.78 16 13 N -0.59 -12.45 3.33 -171.66 -0.57 -13.02 16 14 C 0.57 11.84 6.57 -12.46 -0.08 11.76 16 15 O -0.53 -12.85 17.36 5.29 0.09 -12.76 16 16 C -0.16 -2.51 4.82 -104.87 -0.51 -3.01 16 17 C 0.16 2.10 7.29 -38.98 -0.28 1.81 16 18 F -0.11 -1.73 16.83 2.25 0.04 -1.69 16 19 C -0.14 -1.19 10.01 -39.57 -0.40 -1.59 16 20 C -0.09 -0.68 10.01 -39.47 -0.39 -1.07 16 21 C 0.06 0.62 7.29 -39.43 -0.29 0.33 16 22 F -0.12 -1.38 17.18 2.25 0.04 -1.34 16 23 C 0.13 1.85 7.29 -38.91 -0.28 1.57 16 24 F -0.11 -1.76 16.74 2.25 0.04 -1.73 16 25 C 0.09 2.22 5.51 -2.47 -0.01 2.21 16 26 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.38 10.02 7.25 45.56 0.33 10.35 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.08 1.46 8.03 -51.93 -0.42 1.05 16 30 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.16 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.07 1.62 8.03 -51.93 -0.42 1.21 16 35 H 0.09 2.38 7.47 -51.93 -0.39 1.99 16 LS Contribution 319.38 15.07 4.81 4.81 Total: -1.00 -30.01 319.38 -5.87 -35.88 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -2.55 Total: 7.99 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -2.88 Total: 4.93 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.02 Total: -36.04 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.37 Total: -27.91 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.11 Total: -4.76 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.01 -5.87 -35.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592849343.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.330 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds