Wall clock time and date at job start Tue Mar 31 2020 11:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00041 * 2 1 4 4 H 1.48503 * 109.46647 * 239.99772 * 3 2 1 5 5 H 1.48493 * 109.47247 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47098 * 119.99961 * 3 2 1 7 7 C 1.37871 * 119.99458 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00404 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.88754 * 59.29708 * 9 7 2 11 11 C 1.55163 * 111.00660 * 183.17791 * 9 7 2 12 12 C 1.54320 * 102.94147 * 153.61367 * 11 9 7 13 13 N 1.47021 * 107.27383 * 337.80980 * 12 11 9 14 14 C 1.34775 * 125.65167 * 178.90894 * 13 12 11 15 15 O 1.21583 * 120.00193 * 180.02562 * 14 13 12 16 16 C 1.47554 * 119.99631 * 0.02562 * 14 13 12 17 17 C 1.39931 * 120.17733 * 269.99711 * 16 14 13 18 18 F 1.35099 * 120.07288 * 0.03014 * 17 16 14 19 19 C 1.38161 * 119.85206 * 180.02562 * 17 16 14 20 20 C 1.38336 * 120.21612 * 0.02562 * 19 17 16 21 21 C 1.38449 * 120.35607 * 0.02562 * 20 19 17 22 22 F 1.35098 * 119.92587 * 179.97438 * 21 20 19 23 23 C 1.38440 * 120.14095 * 359.72014 * 21 20 19 24 24 F 1.35106 * 120.10389 * 180.28174 * 23 21 20 25 25 C 1.47524 * 108.71517 * 358.94187 * 13 12 11 26 26 H 0.97010 * 119.99713 * 0.02562 * 1 2 3 27 27 H 0.96696 * 114.00036 * 300.70269 * 10 9 7 28 28 H 1.09002 * 110.71715 * 271.97869 * 11 9 7 29 29 H 1.08996 * 110.71824 * 35.25310 * 11 9 7 30 30 H 1.09008 * 109.88384 * 97.22443 * 12 11 9 31 31 H 1.09003 * 109.88291 * 218.23509 * 12 11 9 32 32 H 1.08005 * 119.89055 * 180.02562 * 19 17 16 33 33 H 1.07999 * 119.82165 * 180.02562 * 20 19 17 34 34 H 1.09004 * 110.36953 * 265.31028 * 25 13 12 35 35 H 1.09001 * 110.41107 * 142.95306 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 8 0.4062 -2.5998 -1.1478 11 6 2.2253 -3.7040 0.0815 12 6 1.3634 -4.8018 0.7399 13 7 0.2753 -4.1275 1.4630 14 6 -0.7064 -4.7401 2.1540 15 8 -1.5585 -4.0789 2.7154 16 6 -0.7472 -6.2131 2.2292 17 6 -1.4492 -6.9474 1.2669 18 9 -2.0921 -6.3093 0.2646 19 6 -1.4833 -8.3264 1.3441 20 6 -0.8264 -8.9828 2.3695 21 6 -0.1301 -8.2650 3.3268 22 9 0.5079 -8.9148 4.3247 23 6 -0.0818 -6.8830 3.2607 24 9 0.6028 -6.1835 4.1922 25 6 0.4352 -2.6694 1.3064 26 1 -0.4850 0.8402 -0.0004 27 1 -0.2523 -1.8949 -1.2146 28 1 2.5440 -4.0097 -0.9150 29 1 3.0856 -3.4629 0.7058 30 1 0.9490 -5.4571 -0.0263 31 1 1.9700 -5.3820 1.4353 32 1 -2.0247 -8.8939 0.6015 33 1 -0.8570 -10.0610 2.4234 34 1 0.9830 -2.2547 2.1526 35 1 -0.5382 -2.1882 1.2111 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592849343.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:19 Heat of formation + Delta-G solvation = -204.115071 kcal Electronic energy + Delta-G solvation = -26829.921112 eV Core-core repulsion = 22377.938847 eV Total energy + Delta-G solvation = -4451.982265 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.77165 -50.27902 -49.81543 -41.37825 -39.68904 -38.83804 -36.19452 -34.23320 -32.94802 -31.69260 -31.21080 -29.70532 -27.43085 -25.61329 -24.17010 -23.97643 -21.59275 -21.11785 -19.53216 -19.28767 -19.12161 -18.86077 -18.04876 -17.64285 -17.27871 -17.11030 -16.76597 -16.60286 -16.54302 -16.20297 -16.14361 -15.65297 -15.55328 -14.97828 -14.83924 -14.75500 -14.16832 -13.94323 -13.57932 -13.51872 -13.34574 -13.01512 -12.96797 -12.84359 -12.61525 -12.38367 -12.31077 -12.18137 -11.44229 -11.26970 -10.69025 -10.47407 -10.35441 -9.89218 -9.71001 -8.28610 -6.46277 -0.61760 -0.48114 1.12532 1.42774 1.43229 1.51721 1.71051 1.93338 2.33048 2.36760 2.73580 2.97237 3.03967 3.16815 3.46482 3.57927 3.68114 4.00231 4.05801 4.12223 4.24536 4.42250 4.51111 4.58151 4.62771 4.68713 4.80205 4.91055 4.98134 5.12318 5.28628 5.38794 5.41084 5.71240 5.99527 6.33884 6.61476 6.77027 7.24397 7.31925 8.77078 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.023716 B = 0.003990 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.332544 B = 7015.697013 C = 7366.993160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.026 3.974 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.558 4.558 8 H 0.073 0.927 9 C 0.236 3.764 10 O -0.587 6.587 11 C -0.110 4.110 12 C 0.104 3.896 13 N -0.598 5.598 14 C 0.562 3.438 15 O -0.580 6.580 16 C -0.182 4.182 17 C 0.138 3.862 18 F -0.131 7.131 19 C -0.103 4.103 20 C -0.049 4.049 21 C 0.064 3.936 22 F -0.121 7.121 23 C 0.106 3.894 24 F -0.130 7.130 25 C 0.104 3.896 26 H 0.271 0.729 27 H 0.376 0.624 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.206 0.794 33 H 0.215 0.785 34 H 0.049 0.951 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.450 -21.281 2.114 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.174 4.174 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.596 4.596 8 H 0.091 0.909 9 C 0.195 3.805 10 O -0.395 6.395 11 C -0.147 4.147 12 C -0.017 4.017 13 N -0.328 5.328 14 C 0.349 3.651 15 O -0.461 6.461 16 C -0.187 4.187 17 C 0.118 3.882 18 F -0.109 7.109 19 C -0.121 4.121 20 C -0.067 4.067 21 C 0.044 3.956 22 F -0.099 7.099 23 C 0.085 3.915 24 F -0.109 7.109 25 C -0.019 4.019 26 H 0.080 0.920 27 H 0.225 0.775 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.223 0.777 33 H 0.232 0.768 34 H 0.068 0.932 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.219 -21.346 2.364 21.478 hybrid contribution -0.112 2.510 0.588 2.581 sum 0.107 -18.836 2.952 19.066 Atomic orbital electron populations 1.69773 1.07307 1.28658 1.49996 1.25854 0.95732 1.02982 0.92875 0.85469 0.78263 0.78078 0.79020 1.19207 1.21149 1.19510 1.21783 0.94126 0.91018 1.52693 0.90909 1.19822 0.86556 0.93382 0.80699 1.86076 1.51474 1.54643 1.47314 1.22638 0.97237 0.93165 1.01706 1.22223 0.87854 0.95952 0.95702 1.48826 1.26144 1.09197 1.48659 1.17952 0.80862 0.87433 0.78830 1.90770 1.40055 1.67164 1.48138 1.19705 1.06302 0.93112 0.99629 1.17754 0.93863 0.91625 0.85002 1.91588 1.78743 1.82835 1.57761 1.21507 1.00540 0.89215 1.00882 1.21588 0.91960 1.03689 0.89509 1.17584 1.00460 0.86544 0.91016 1.91574 1.79666 1.80209 1.58493 1.17479 0.96359 0.89158 0.88510 1.91550 1.76954 1.79371 1.63007 1.23041 1.00644 0.77671 1.00501 0.92002 0.77472 0.88945 0.88909 0.90526 0.89539 0.77695 0.76817 0.93224 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.59 10.69 21.45 0.23 -50.36 16 2 C 0.03 1.39 5.29 84.65 0.45 1.84 16 3 Si 0.97 41.82 29.54 68.60 2.03 43.85 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.56 -29.05 8.26 25.60 0.21 -28.84 16 8 H 0.07 3.62 7.78 -2.91 -0.02 3.60 16 9 C 0.24 11.54 0.88 -10.15 -0.01 11.53 16 10 O -0.59 -30.53 13.17 -148.98 -1.96 -32.50 16 11 C -0.11 -4.20 6.13 31.78 0.19 -4.00 16 12 C 0.10 3.63 6.47 86.73 0.56 4.19 16 13 N -0.60 -26.08 3.33 -815.26 -2.71 -28.80 16 14 C 0.56 24.56 6.57 86.70 0.57 25.13 16 15 O -0.58 -30.45 17.36 -3.98 -0.07 -30.51 16 16 C -0.18 -5.83 4.82 -20.02 -0.10 -5.93 16 17 C 0.14 3.44 7.29 22.66 0.17 3.61 16 18 F -0.13 -4.01 16.83 44.97 0.76 -3.25 16 19 C -0.10 -1.26 10.01 22.27 0.22 -1.03 16 20 C -0.05 -0.48 10.01 22.34 0.22 -0.25 16 21 C 0.06 1.20 7.29 22.37 0.16 1.36 16 22 F -0.12 -2.33 17.18 44.97 0.77 -1.55 16 23 C 0.11 2.94 7.29 22.71 0.17 3.11 16 24 F -0.13 -4.30 16.74 44.97 0.75 -3.55 16 25 C 0.10 5.28 5.51 86.84 0.48 5.76 16 26 H 0.27 14.34 8.31 -92.70 -0.77 13.57 16 27 H 0.38 20.63 7.25 -74.06 -0.54 20.10 16 28 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 29 H 0.09 3.28 8.03 -2.39 -0.02 3.26 16 30 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.21 0.75 8.06 -2.91 -0.02 0.73 16 33 H 0.22 -0.05 8.06 -2.91 -0.02 -0.08 16 34 H 0.05 2.61 8.03 -2.38 -0.02 2.59 16 35 H 0.05 2.79 7.47 -2.39 -0.02 2.77 16 Total: -1.00 -72.06 319.38 3.72 -68.34 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.63 Total: 21.87 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: 3.30 Total: 16.46 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -2.48 Total: -79.16 kcal Atomic # 8 Polarization: -60.98 SS G_CDS: -2.03 Total: -63.01 kcal Atomic # 9 Polarization: -10.63 SS G_CDS: 2.28 Total: -8.35 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -72.06 3.72 -68.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592849343.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.772 kcal (2) G-P(sol) polarization free energy of solvation -72.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds