Wall clock time and date at job start Tue Mar 31 2020 11:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 110.63787 * 300.42070 * 9 7 2 11 11 C 1.55153 * 110.72079 * 177.27948 * 9 7 2 12 12 C 1.54905 * 101.58432 * 206.13591 * 11 9 7 13 13 N 1.47419 * 104.83258 * 37.00633 * 12 11 9 14 14 C 1.34781 * 125.64850 * 155.91019 * 13 12 11 15 15 O 1.21586 * 120.00055 * 179.97438 * 14 13 12 16 16 C 1.47549 * 120.00040 * 359.97438 * 14 13 12 17 17 C 1.39929 * 120.17170 * 270.00044 * 16 14 13 18 18 F 1.35100 * 120.07593 * 359.94760 * 17 16 14 19 19 C 1.38165 * 119.85087 * 179.97438 * 17 16 14 20 20 C 1.38341 * 120.21053 * 0.02562 * 19 17 16 21 21 C 1.38438 * 120.36347 * 359.97438 * 20 19 17 22 22 F 1.35103 * 119.93340 * 179.97438 * 21 20 19 23 23 C 1.38450 * 120.14232 * 359.74023 * 21 20 19 24 24 F 1.35094 * 120.10959 * 180.25696 * 23 21 20 25 25 C 1.47319 * 108.73704 * 335.71934 * 13 12 11 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 0.96699 * 114.00083 * 59.29892 * 10 9 7 28 28 H 1.09004 * 111.00253 * 324.20924 * 11 9 7 29 29 H 1.08998 * 111.00319 * 88.01567 * 11 9 7 30 30 H 1.08994 * 110.37244 * 155.84858 * 12 11 9 31 31 H 1.09008 * 110.36329 * 278.17306 * 12 11 9 32 32 H 1.08003 * 119.89488 * 179.97438 * 19 17 16 33 33 H 1.08004 * 119.81835 * 180.02562 * 20 19 17 34 34 H 1.09004 * 110.06766 * 241.86643 * 25 13 12 35 35 H 1.08999 * 109.85130 * 120.60999 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4077 -2.5991 1.1440 11 6 2.2320 -3.6993 -0.0725 12 6 1.3499 -4.7854 -0.7371 13 7 0.5316 -4.0559 -1.7227 14 6 -0.0315 -4.5894 -2.8250 15 8 -0.6896 -3.8900 -3.5707 16 6 0.1508 -6.0222 -3.1268 17 6 1.2338 -6.4446 -3.9055 18 9 2.1163 -5.5410 -4.3849 19 6 1.3984 -7.7880 -4.1836 20 6 0.4958 -8.7156 -3.6951 21 6 -0.5788 -8.3074 -2.9237 22 9 -1.4553 -9.2207 -2.4515 23 6 -0.7547 -6.9657 -2.6311 24 9 -1.8007 -6.5686 -1.8740 25 6 0.4269 -2.6481 -1.3017 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2492 -1.8928 1.2125 28 1 3.0959 -3.4634 -0.6939 29 1 2.5437 -4.0054 0.9261 30 1 1.9731 -5.5273 -1.2362 31 1 0.7117 -5.2632 0.0064 32 1 2.2339 -8.1148 -4.7850 33 1 0.6308 -9.7642 -3.9160 34 1 -0.6150 -2.3914 -1.1102 35 1 0.8344 -1.9987 -2.0765 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592849347.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:21 Heat of formation + Delta-G solvation = -183.514186 kcal Electronic energy + Delta-G solvation = -26789.633140 eV Core-core repulsion = 22338.544197 eV Total energy + Delta-G solvation = -4451.088943 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.75815 -49.26018 -48.82235 -39.88847 -38.50880 -37.21728 -34.39855 -32.24466 -31.79152 -30.38340 -29.99839 -27.95138 -25.73217 -24.23063 -23.21501 -22.59170 -19.96788 -19.56337 -18.48684 -18.17552 -17.71674 -17.25185 -16.85531 -16.47550 -16.09111 -15.79482 -15.52717 -15.18596 -14.92901 -14.85544 -14.75061 -14.65215 -14.27119 -13.44990 -13.25067 -13.04565 -12.95291 -12.49777 -12.38637 -12.07974 -11.97509 -11.72509 -11.51314 -11.11851 -10.88497 -10.73514 -10.50458 -10.23398 -9.86863 -9.43986 -9.39687 -8.98579 -8.72416 -8.37769 -8.08514 -6.33282 -4.42071 0.29548 0.39769 2.64315 2.69617 3.12454 3.18731 3.27319 3.30535 3.41162 3.67156 4.03169 4.10326 4.23910 4.40329 4.48166 4.94097 5.08443 5.21533 5.27724 5.34670 5.39357 5.56933 5.61068 5.73377 5.93834 6.02700 6.23555 6.40928 6.66369 6.75850 6.78733 7.17380 7.28242 7.68795 7.90416 7.98396 8.37486 8.61931 9.25629 9.35289 10.74728 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.023159 B = 0.004014 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.758915 B = 6973.620291 C = 7344.656456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.249 3.751 10 O -0.584 6.584 11 C -0.116 4.116 12 C 0.098 3.902 13 N -0.594 5.594 14 C 0.566 3.434 15 O -0.526 6.526 16 C -0.155 4.155 17 C 0.153 3.847 18 F -0.113 7.113 19 C -0.136 4.136 20 C -0.086 4.086 21 C 0.057 3.943 22 F -0.121 7.121 23 C 0.131 3.869 24 F -0.107 7.107 25 C 0.102 3.898 26 H 0.271 0.729 27 H 0.385 0.615 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.070 0.930 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.950 -17.212 -5.975 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.153 4.153 12 C -0.025 4.025 13 N -0.326 5.326 14 C 0.351 3.649 15 O -0.404 6.404 16 C -0.161 4.161 17 C 0.133 3.867 18 F -0.091 7.091 19 C -0.155 4.155 20 C -0.105 4.105 21 C 0.036 3.964 22 F -0.100 7.100 23 C 0.109 3.891 24 F -0.085 7.085 25 C -0.019 4.019 26 H 0.081 0.919 27 H 0.236 0.764 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.178 0.822 33 H 0.178 0.822 34 H 0.089 0.911 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.727 -17.218 -6.272 18.526 hybrid contribution -0.244 1.463 -0.033 1.484 sum 2.483 -15.755 -6.305 17.150 Atomic orbital electron populations 1.69650 1.06044 1.27982 1.49690 1.25085 0.95059 0.99868 0.93267 0.86326 0.80052 0.82609 0.77805 1.19540 1.20726 1.20692 1.21545 0.93778 0.89960 1.52349 0.91321 1.19494 0.86139 0.92211 0.81332 1.86095 1.51714 1.54918 1.46643 1.22749 0.97510 0.94720 1.00369 1.22406 0.93487 0.95534 0.91041 1.48850 1.48910 1.13204 1.21623 1.17190 0.80944 0.85130 0.81670 1.90828 1.40272 1.60877 1.48415 1.20064 0.96901 0.95894 1.03214 1.17314 0.87217 0.86962 0.95212 1.91616 1.65667 1.66512 1.85344 1.20998 1.01788 0.89926 1.02776 1.20978 0.91928 1.01724 0.95849 1.17444 0.92417 0.84543 1.01952 1.91567 1.67033 1.64729 1.86632 1.17261 0.87016 0.90340 0.94438 1.91624 1.53510 1.91120 1.72273 1.23249 1.02201 0.77044 0.99383 0.91913 0.76390 0.90258 0.90169 0.92152 0.91279 0.82248 0.82163 0.91145 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.61 10.96 55.43 0.61 -23.00 16 2 C 0.07 1.82 5.27 -17.82 -0.09 1.72 16 3 Si 0.90 20.25 29.54 -169.99 -5.02 15.22 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.54 -13.84 8.11 -34.44 -0.28 -14.12 16 8 H 0.07 1.74 7.77 -52.49 -0.41 1.33 16 9 C 0.25 5.93 0.85 -89.94 -0.08 5.85 16 10 O -0.58 -14.53 13.08 -35.23 -0.46 -14.99 16 11 C -0.12 -2.26 6.23 -24.59 -0.15 -2.41 16 12 C 0.10 1.74 6.67 -2.53 -0.02 1.73 16 13 N -0.59 -12.43 3.33 -171.51 -0.57 -13.00 16 14 C 0.57 11.67 6.57 -12.46 -0.08 11.59 16 15 O -0.53 -12.74 17.43 5.29 0.09 -12.65 16 16 C -0.16 -2.46 4.53 -104.87 -0.48 -2.93 16 17 C 0.15 1.96 7.29 -38.98 -0.28 1.68 16 18 F -0.11 -1.63 16.83 2.25 0.04 -1.59 16 19 C -0.14 -1.13 10.01 -39.57 -0.40 -1.52 16 20 C -0.09 -0.66 10.01 -39.47 -0.39 -1.05 16 21 C 0.06 0.63 7.29 -39.43 -0.29 0.34 16 22 F -0.12 -1.39 17.18 2.25 0.04 -1.35 16 23 C 0.13 1.89 7.30 -38.90 -0.28 1.60 16 24 F -0.11 -1.79 16.74 2.25 0.04 -1.75 16 25 C 0.10 2.46 5.39 -2.90 -0.02 2.45 16 26 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 27 H 0.38 9.86 7.24 45.56 0.33 10.19 16 28 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.06 0.89 7.69 -51.93 -0.40 0.49 16 31 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 32 H 0.16 0.79 8.06 -52.48 -0.42 0.36 16 33 H 0.16 0.65 8.06 -52.48 -0.42 0.23 16 34 H 0.07 1.85 8.00 -51.93 -0.42 1.44 16 35 H 0.07 1.87 7.81 -51.93 -0.41 1.47 16 LS Contribution 319.19 15.07 4.81 4.81 Total: -1.00 -30.06 319.19 -5.81 -35.87 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -2.54 Total: 7.52 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -2.84 Total: 4.92 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.04 Total: -36.01 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.37 Total: -27.65 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.11 Total: -4.69 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.06 -5.81 -35.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592849347.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.644 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds