Wall clock time and date at job start Tue Mar 31 2020 11:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 110.63787 * 300.42070 * 9 7 2 11 11 C 1.55153 * 110.72079 * 177.27948 * 9 7 2 12 12 C 1.54905 * 101.58432 * 206.13591 * 11 9 7 13 13 N 1.47419 * 104.83258 * 37.00633 * 12 11 9 14 14 C 1.34781 * 125.64850 * 155.91019 * 13 12 11 15 15 O 1.21586 * 120.00055 * 179.97438 * 14 13 12 16 16 C 1.47549 * 120.00040 * 359.97438 * 14 13 12 17 17 C 1.39929 * 120.17170 * 270.00044 * 16 14 13 18 18 F 1.35100 * 120.07593 * 359.94760 * 17 16 14 19 19 C 1.38165 * 119.85087 * 179.97438 * 17 16 14 20 20 C 1.38341 * 120.21053 * 0.02562 * 19 17 16 21 21 C 1.38438 * 120.36347 * 359.97438 * 20 19 17 22 22 F 1.35103 * 119.93340 * 179.97438 * 21 20 19 23 23 C 1.38450 * 120.14232 * 359.74023 * 21 20 19 24 24 F 1.35094 * 120.10959 * 180.25696 * 23 21 20 25 25 C 1.47319 * 108.73704 * 335.71934 * 13 12 11 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 0.96699 * 114.00083 * 59.29892 * 10 9 7 28 28 H 1.09004 * 111.00253 * 324.20924 * 11 9 7 29 29 H 1.08998 * 111.00319 * 88.01567 * 11 9 7 30 30 H 1.08994 * 110.37244 * 155.84858 * 12 11 9 31 31 H 1.09008 * 110.36329 * 278.17306 * 12 11 9 32 32 H 1.08003 * 119.89488 * 179.97438 * 19 17 16 33 33 H 1.08004 * 119.81835 * 180.02562 * 20 19 17 34 34 H 1.09004 * 110.06766 * 241.86643 * 25 13 12 35 35 H 1.08999 * 109.85130 * 120.60999 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4077 -2.5991 1.1440 11 6 2.2320 -3.6993 -0.0725 12 6 1.3499 -4.7854 -0.7371 13 7 0.5316 -4.0559 -1.7227 14 6 -0.0315 -4.5894 -2.8250 15 8 -0.6896 -3.8900 -3.5707 16 6 0.1508 -6.0222 -3.1268 17 6 1.2338 -6.4446 -3.9055 18 9 2.1163 -5.5410 -4.3849 19 6 1.3984 -7.7880 -4.1836 20 6 0.4958 -8.7156 -3.6951 21 6 -0.5788 -8.3074 -2.9237 22 9 -1.4553 -9.2207 -2.4515 23 6 -0.7547 -6.9657 -2.6311 24 9 -1.8007 -6.5686 -1.8740 25 6 0.4269 -2.6481 -1.3017 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2492 -1.8928 1.2125 28 1 3.0959 -3.4634 -0.6939 29 1 2.5437 -4.0054 0.9261 30 1 1.9731 -5.5273 -1.2362 31 1 0.7117 -5.2632 0.0064 32 1 2.2339 -8.1148 -4.7850 33 1 0.6308 -9.7642 -3.9160 34 1 -0.6150 -2.3914 -1.1102 35 1 0.8344 -1.9987 -2.0765 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592849347.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:21 Heat of formation + Delta-G solvation = -204.608864 kcal Electronic energy + Delta-G solvation = -26790.547874 eV Core-core repulsion = 22338.544197 eV Total energy + Delta-G solvation = -4452.003677 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.77621 -50.27494 -49.82008 -41.39710 -39.70056 -38.87387 -36.23370 -34.25169 -32.93619 -31.64716 -31.21659 -29.73147 -27.44131 -25.60540 -24.18493 -24.01697 -21.60386 -21.13441 -19.53427 -19.24308 -19.14468 -18.90854 -18.05806 -17.62969 -17.37952 -17.20039 -16.76795 -16.60186 -16.41076 -16.21080 -16.11491 -15.64741 -15.55758 -14.90631 -14.86953 -14.83893 -14.19636 -13.97369 -13.58694 -13.53983 -13.38345 -13.01102 -12.97083 -12.91137 -12.63019 -12.39623 -12.27536 -12.17300 -11.44988 -11.26062 -10.70097 -10.45993 -10.32761 -9.89199 -9.83817 -8.30895 -6.47235 -0.62122 -0.47974 1.10291 1.38793 1.42152 1.53164 1.68802 1.92993 2.32924 2.35799 2.72917 2.95284 3.02527 3.16794 3.45916 3.57953 3.68131 3.98474 4.02737 4.16323 4.24351 4.41730 4.48147 4.57236 4.58834 4.68960 4.80658 4.88647 5.00368 5.07584 5.26132 5.40445 5.41619 5.69365 5.97965 6.31869 6.60165 6.74821 7.22868 7.30954 8.75857 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.023159 B = 0.004014 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.758915 B = 6973.620291 C = 7344.656456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.025 3.975 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.557 4.557 8 H 0.072 0.928 9 C 0.234 3.766 10 O -0.587 6.587 11 C -0.108 4.108 12 C 0.104 3.896 13 N -0.600 5.600 14 C 0.562 3.438 15 O -0.579 6.579 16 C -0.183 4.183 17 C 0.141 3.859 18 F -0.128 7.128 19 C -0.101 4.101 20 C -0.049 4.049 21 C 0.063 3.937 22 F -0.122 7.122 23 C 0.103 3.897 24 F -0.133 7.133 25 C 0.118 3.882 26 H 0.271 0.729 27 H 0.377 0.623 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.209 0.791 33 H 0.215 0.785 34 H 0.034 0.966 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.395 -20.638 -6.828 22.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.203 1.203 7 C -0.595 4.595 8 H 0.090 0.910 9 C 0.194 3.806 10 O -0.396 6.396 11 C -0.146 4.146 12 C -0.018 4.018 13 N -0.331 5.331 14 C 0.349 3.651 15 O -0.460 6.460 16 C -0.188 4.188 17 C 0.121 3.879 18 F -0.106 7.106 19 C -0.119 4.119 20 C -0.067 4.067 21 C 0.043 3.957 22 F -0.101 7.101 23 C 0.082 3.918 24 F -0.112 7.112 25 C -0.005 4.005 26 H 0.080 0.920 27 H 0.227 0.773 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.226 0.774 33 H 0.232 0.768 34 H 0.052 0.948 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.198 -20.688 -7.106 22.484 hybrid contribution -1.022 2.434 0.182 2.646 sum 4.176 -18.254 -6.924 19.965 Atomic orbital electron populations 1.69763 1.07264 1.28569 1.50208 1.25854 0.95787 1.03002 0.92947 0.85376 0.79222 0.78743 0.77535 1.18601 1.21044 1.20252 1.21878 0.94113 0.91091 1.52405 0.91023 1.19716 0.86603 0.93828 0.80460 1.86084 1.51695 1.54558 1.47232 1.22749 0.96937 0.93129 1.01785 1.22529 0.93244 0.95380 0.90623 1.48924 1.49545 1.12122 1.22528 1.18003 0.79345 0.87278 0.80469 1.90772 1.42256 1.63057 1.49950 1.19681 0.99804 0.92599 1.06688 1.17676 0.86351 0.88580 0.95289 1.91585 1.65953 1.67517 1.85544 1.21523 1.02327 0.87188 1.00893 1.21602 0.88919 1.04042 0.92155 1.17630 0.93197 0.82888 1.02020 1.91573 1.67425 1.64323 1.86764 1.17567 0.86754 0.91813 0.95661 1.91549 1.54783 1.91610 1.73236 1.22766 0.99748 0.79007 0.98978 0.91974 0.77283 0.89276 0.88503 0.88166 0.90957 0.77424 0.76827 0.94787 0.94115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.63 10.96 21.45 0.24 -50.39 16 2 C 0.02 1.31 5.27 84.66 0.45 1.76 16 3 Si 0.97 42.18 29.54 68.60 2.03 44.20 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.56 -29.25 8.11 25.60 0.21 -29.04 16 8 H 0.07 3.63 7.77 -2.91 -0.02 3.61 16 9 C 0.23 11.50 0.85 -10.35 -0.01 11.49 16 10 O -0.59 -30.23 13.08 -148.98 -1.95 -32.18 16 11 C -0.11 -4.15 6.23 31.98 0.20 -3.95 16 12 C 0.10 3.61 6.67 86.85 0.58 4.19 16 13 N -0.60 -26.12 3.33 -814.78 -2.72 -28.83 16 14 C 0.56 24.25 6.57 86.70 0.57 24.82 16 15 O -0.58 -30.10 17.43 -3.99 -0.07 -30.17 16 16 C -0.18 -5.71 4.53 -20.02 -0.09 -5.80 16 17 C 0.14 3.24 7.29 22.66 0.17 3.41 16 18 F -0.13 -3.47 16.83 44.97 0.76 -2.71 16 19 C -0.10 -1.07 10.01 22.28 0.22 -0.85 16 20 C -0.05 -0.44 10.01 22.34 0.22 -0.22 16 21 C 0.06 1.19 7.29 22.37 0.16 1.35 16 22 F -0.12 -2.43 17.18 44.97 0.77 -1.66 16 23 C 0.10 2.91 7.30 22.71 0.17 3.07 16 24 F -0.13 -4.64 16.74 44.97 0.75 -3.88 16 25 C 0.12 6.05 5.39 86.67 0.47 6.52 16 26 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 27 H 0.38 20.38 7.24 -74.06 -0.54 19.84 16 28 H 0.09 3.22 8.03 -2.38 -0.02 3.20 16 29 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 30 H 0.10 2.70 7.69 -2.39 -0.02 2.68 16 31 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 32 H 0.21 0.36 8.06 -2.91 -0.02 0.33 16 33 H 0.21 -0.17 8.06 -2.91 -0.02 -0.20 16 34 H 0.03 1.94 8.00 -2.39 -0.02 1.93 16 35 H 0.04 2.29 7.81 -2.39 -0.02 2.27 16 Total: -1.00 -72.82 319.19 3.75 -69.06 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.63 Total: 19.82 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 3.31 Total: 16.74 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -2.48 Total: -79.23 kcal Atomic # 8 Polarization: -60.33 SS G_CDS: -2.02 Total: -62.35 kcal Atomic # 9 Polarization: -10.54 SS G_CDS: 2.28 Total: -8.26 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -72.82 3.75 -69.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592849347.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.544 kcal (2) G-P(sol) polarization free energy of solvation -72.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds