Wall clock time and date at job start Tue Mar 31 2020 11:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99996 * 2 1 4 4 H 1.48506 * 109.46904 * 269.99852 * 3 2 1 5 5 H 1.48495 * 109.47094 * 30.00243 * 3 2 1 6 6 H 1.48507 * 109.46862 * 150.00409 * 3 2 1 7 7 C 1.38799 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00181 * 359.97438 * 7 2 1 9 9 S 1.76196 * 119.99963 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00184 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47018 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46848 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47138 * 180.02562 * 12 11 10 14 14 C 1.46753 * 111.00268 * 50.13662 * 13 12 11 15 15 C 1.53430 * 108.59086 * 175.06877 * 14 13 12 16 16 O 1.43132 * 107.91127 * 296.75333 * 15 14 13 17 17 C 1.36192 * 116.70022 * 45.36054 * 16 15 14 18 18 C 1.38800 * 118.70973 * 165.25035 * 17 16 15 19 19 C 1.38316 * 120.22567 * 179.51437 * 18 17 16 20 20 F 1.35099 * 120.02019 * 179.97438 * 19 18 17 21 21 C 1.38633 * 119.95515 * 0.02562 * 19 18 17 22 22 F 1.35098 * 119.97809 * 180.02562 * 21 19 18 23 23 C 1.38223 * 120.03681 * 0.33043 * 21 19 18 24 24 C 1.38924 * 121.36590 * 344.92190 * 17 16 15 25 25 H 0.97006 * 119.99475 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47301 * 60.00142 * 10 9 7 27 27 H 1.08999 * 109.46968 * 299.99630 * 10 9 7 28 28 H 1.08995 * 109.46840 * 60.00016 * 11 10 9 29 29 H 1.08999 * 109.47077 * 299.99721 * 11 10 9 30 30 H 1.09004 * 109.47426 * 60.00071 * 12 11 10 31 31 H 1.09000 * 109.47183 * 300.00247 * 12 11 10 32 32 H 1.08992 * 109.61829 * 294.80246 * 14 13 12 33 33 H 1.09005 * 109.61587 * 55.34181 * 14 13 12 34 34 H 1.09000 * 109.76522 * 56.35520 * 15 14 13 35 35 H 1.08994 * 109.76875 * 177.14306 * 15 14 13 36 36 H 1.08007 * 119.88719 * 359.53217 * 18 17 16 37 37 H 1.08003 * 119.87148 * 179.74244 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5480 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7722 -1.2022 -0.0012 10 6 4.0865 -2.9847 -0.0009 11 6 5.5957 -3.2364 -0.0021 12 6 5.8613 -4.7432 -0.0025 13 7 7.3102 -4.9850 -0.0030 14 6 7.9739 -4.2056 1.0485 15 6 9.4586 -4.5914 1.0800 16 8 9.5464 -5.9752 1.4351 17 6 8.6928 -6.8253 0.7998 18 6 8.9370 -8.1899 0.8684 19 6 8.0848 -9.0821 0.2433 20 9 8.3267 -10.4095 0.3122 21 6 6.9827 -8.6132 -0.4550 22 9 6.1496 -9.4843 -1.0653 23 6 6.7393 -7.2548 -0.5323 24 6 7.5906 -6.3529 0.0983 25 1 -0.4850 0.8401 -0.0004 26 1 3.6432 -3.4319 -0.8906 27 1 3.6439 -3.4314 0.8893 28 1 6.0393 -2.7891 0.8873 29 1 6.0379 -2.7897 -0.8926 30 1 5.4177 -5.1901 -0.8923 31 1 5.4190 -5.1903 0.8877 32 1 7.8767 -3.1418 0.8322 33 1 7.5173 -4.4289 2.0128 34 1 9.9012 -4.4342 0.0964 35 1 9.9810 -3.9866 1.8211 36 1 9.7954 -8.5564 1.4119 37 1 5.8822 -6.8922 -1.0805 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593121909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:45 Heat of formation + Delta-G solvation = -98.318062 kcal Electronic energy + Delta-G solvation = -23156.011932 eV Core-core repulsion = 19274.830546 eV Total energy + Delta-G solvation = -3881.181386 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.65484 -48.72840 -41.51367 -37.79954 -37.37526 -33.29964 -32.50541 -31.01669 -30.72317 -28.34240 -25.89302 -25.33753 -24.78842 -23.18293 -21.46849 -20.66184 -18.88885 -18.22663 -17.82646 -17.50588 -16.65596 -16.57504 -15.90484 -15.69909 -15.64339 -15.23145 -15.14095 -15.00879 -14.74238 -14.47952 -14.04243 -14.01506 -13.66453 -13.35257 -12.94173 -12.72685 -12.29755 -12.27368 -12.07733 -11.65977 -11.27665 -11.23364 -11.10431 -11.08497 -10.68871 -10.34260 -10.09508 -9.86487 -9.07625 -8.99851 -8.67550 -7.97507 -7.04061 -6.34945 -4.08656 0.57085 0.65269 2.59699 2.83861 2.94727 3.22712 3.24690 3.38121 3.50121 3.67638 3.98247 4.02784 4.24564 4.26792 4.55936 4.62674 4.67511 4.72373 4.74772 4.93378 5.03589 5.04457 5.10871 5.16734 5.25797 5.30933 5.42689 5.46334 5.51014 5.58470 5.73348 5.97176 6.18433 6.23503 6.40460 6.46371 6.53340 6.87905 7.88683 8.37759 9.10444 10.74522 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.022726 B = 0.002711 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.798334 B =10323.913323 C =11400.688547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.238 1.238 7 C -0.504 4.504 8 H 0.088 0.912 9 S -0.212 6.212 10 C -0.084 4.084 11 C -0.105 4.105 12 C 0.058 3.942 13 N -0.482 5.482 14 C 0.007 3.993 15 C 0.057 3.943 16 O -0.308 6.308 17 C 0.108 3.892 18 C -0.133 4.133 19 C 0.069 3.931 20 F -0.127 7.127 21 C 0.068 3.932 22 F -0.127 7.127 23 C -0.136 4.136 24 C 0.074 3.926 25 H 0.271 0.729 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.115 0.885 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.121 0.879 36 H 0.155 0.845 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.253 -13.600 1.942 24.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.162 1.162 7 C -0.652 4.652 8 H 0.106 0.894 9 S 0.016 5.984 10 C -0.233 4.233 11 C -0.143 4.143 12 C -0.069 4.069 13 N -0.196 5.196 14 C -0.119 4.119 15 C -0.018 4.018 16 O -0.221 6.221 17 C 0.059 3.941 18 C -0.153 4.153 19 C 0.048 3.952 20 F -0.105 7.105 21 C 0.047 3.953 22 F -0.106 7.106 23 C -0.158 4.158 24 C -0.026 4.026 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.133 0.867 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.139 0.861 36 H 0.172 0.828 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 21.070 -12.463 1.636 24.534 hybrid contribution -1.324 -0.657 0.298 1.508 sum 19.746 -13.120 1.933 23.785 Atomic orbital electron populations 1.69939 1.05935 1.27791 1.48014 1.24803 0.94519 0.99037 0.93299 0.86668 0.81676 0.83228 0.79740 1.19319 1.20051 1.16219 1.22102 0.86915 0.97460 1.58683 0.89355 1.84133 1.11947 1.04752 1.97557 1.22993 0.96560 0.99783 1.03991 1.21490 0.96015 0.93180 1.03640 1.22492 0.83365 0.98423 1.02584 1.58830 1.12496 1.03418 1.44848 1.22989 0.94611 1.00828 0.93513 1.23304 0.96110 0.79263 1.03115 1.86248 1.55935 1.18549 1.61417 1.18201 0.90798 0.89657 0.95409 1.20124 1.01634 0.89731 1.03784 1.17056 0.96397 0.78381 1.03359 1.91529 1.94030 1.30011 1.94953 1.17255 0.90755 0.87585 0.99712 1.91536 1.69798 1.68335 1.80886 1.20764 1.01964 0.89782 1.03250 1.18724 0.95282 0.89623 0.98969 0.91892 0.91108 0.91296 0.91011 0.90186 0.89200 0.92809 0.86713 0.91624 0.90154 0.86121 0.82780 0.82697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.24 13.97 55.49 0.78 -25.46 16 2 C 0.09 2.62 5.50 -17.43 -0.10 2.53 16 3 Si 0.86 20.92 27.74 -169.99 -4.71 16.20 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.24 -5.61 6.74 56.52 0.38 -5.23 16 7 C -0.50 -14.18 10.04 30.94 0.31 -13.87 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 9 S -0.21 -4.87 19.41 -107.50 -2.09 -6.95 16 10 C -0.08 -1.48 5.67 37.16 0.21 -1.27 16 11 C -0.10 -1.36 4.65 -26.73 -0.12 -1.48 16 12 C 0.06 0.63 4.37 -3.83 -0.02 0.61 16 13 N -0.48 -4.92 4.76 -170.79 -0.81 -5.73 16 14 C 0.01 0.06 4.84 -3.68 -0.02 0.04 16 15 C 0.06 0.41 7.26 37.38 0.27 0.68 16 16 O -0.31 -2.94 10.40 -20.35 -0.21 -3.15 16 17 C 0.11 1.10 6.47 -39.12 -0.25 0.85 16 18 C -0.13 -1.27 9.91 -39.34 -0.39 -1.66 16 19 C 0.07 0.74 7.30 -39.41 -0.29 0.46 16 20 F -0.13 -1.44 17.18 2.25 0.04 -1.40 16 21 C 0.07 0.76 7.30 -39.44 -0.29 0.47 16 22 F -0.13 -1.55 17.18 2.25 0.04 -1.51 16 23 C -0.14 -1.42 9.04 -39.25 -0.35 -1.78 16 24 C 0.07 0.78 5.81 -83.53 -0.49 0.29 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 27 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 28 H 0.07 0.89 6.43 -51.93 -0.33 0.55 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.09 0.93 6.44 -51.93 -0.33 0.60 16 31 H 0.05 0.59 8.12 -51.93 -0.42 0.17 16 32 H 0.11 0.89 6.54 -51.93 -0.34 0.55 16 33 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 37 H 0.16 1.47 6.13 -52.48 -0.32 1.15 16 LS Contribution 326.65 15.07 4.92 4.92 Total: -1.00 -30.87 326.65 -7.86 -38.73 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.29 Total: -1.53 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.52 Total: -14.13 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: -0.04 Total: -31.19 kcal Atomic # 8 Polarization: -2.94 SS G_CDS: -0.21 Total: -3.15 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.08 Total: -2.90 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.71 Total: 16.20 kcal Atomic # 16 Polarization: -4.87 SS G_CDS: -2.09 Total: -6.95 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.87 -7.86 -38.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593121909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.588 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds