Wall clock time and date at job start Tue Mar 31 2020 11:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99905 * 2 1 4 4 H 1.48497 * 109.47251 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47194 * 299.99703 * 3 2 1 6 6 H 1.48504 * 109.47306 * 60.00035 * 3 2 1 7 7 C 1.37878 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99798 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00002 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.52576 * 299.92257 * 9 7 2 11 11 C 1.53046 * 109.49577 * 60.00123 * 9 7 2 12 12 C 1.53039 * 109.52798 * 181.31010 * 11 9 7 13 13 C 1.53200 * 109.31160 * 298.64112 * 12 11 9 14 14 N 1.46931 * 108.77279 * 54.63574 * 13 12 11 15 15 S 1.65592 * 120.63004 * 126.41574 * 14 13 12 16 16 O 1.42105 * 104.27798 * 206.06830 * 15 14 13 17 17 O 1.42104 * 104.27961 * 333.92733 * 15 14 13 18 18 C 1.81405 * 104.45182 * 89.99760 * 15 14 13 19 19 C 1.52998 * 109.46886 * 180.02562 * 18 15 14 20 20 C 1.53005 * 109.46561 * 179.97438 * 19 18 15 21 21 F 1.39892 * 109.47415 * 59.99917 * 20 19 18 22 22 F 1.39908 * 109.46819 * 179.97438 * 20 19 18 23 23 F 1.39898 * 109.47057 * 299.99232 * 20 19 18 24 24 C 1.46928 * 118.73792 * 306.39072 * 14 13 12 25 25 H 0.96991 * 119.99542 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46115 * 61.29463 * 11 9 7 27 27 H 1.09004 * 109.45806 * 301.32348 * 11 9 7 28 28 H 1.08997 * 109.49901 * 58.58690 * 12 11 9 29 29 H 1.08996 * 109.49878 * 178.65713 * 12 11 9 30 30 H 1.08998 * 109.58358 * 174.41666 * 13 12 11 31 31 H 1.08995 * 109.58474 * 294.70356 * 13 12 11 32 32 H 1.09005 * 109.46644 * 299.99621 * 18 15 14 33 33 H 1.08992 * 109.46780 * 59.99906 * 18 15 14 34 34 H 1.08997 * 109.47151 * 299.99476 * 19 18 15 35 35 H 1.08997 * 109.47766 * 59.99796 * 19 18 15 36 36 H 1.08999 * 109.58766 * 173.40097 * 24 14 13 37 37 H 1.09002 * 109.58364 * 293.68193 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0017 10 1 0.6256 -2.5578 0.8923 11 6 0.3706 -2.5817 -1.2473 12 6 -0.4196 -3.8922 -1.2305 13 6 0.5567 -5.0727 -1.2480 14 7 1.5003 -4.9225 -0.1318 15 16 1.7192 -6.1493 0.9587 16 8 2.1488 -5.4926 2.1435 17 8 0.4960 -6.8717 0.9239 18 6 3.0654 -7.1430 0.2580 19 6 3.3645 -8.3227 1.1853 20 6 4.4995 -9.1611 0.5939 21 9 5.6451 -8.3690 0.4627 22 9 4.7735 -10.2395 1.4421 23 9 4.1182 -9.6415 -0.6635 24 6 2.2463 -3.6634 -0.0018 25 1 -0.4849 0.8400 0.0004 26 1 0.9988 -2.5478 -2.1375 27 1 -0.3221 -1.7401 -1.2595 28 1 -1.0293 -3.9379 -0.3282 29 1 -1.0642 -3.9396 -2.1081 30 1 0.0041 -6.0055 -1.1363 31 1 1.1022 -5.0818 -2.1916 32 1 2.7685 -7.5176 -0.7217 33 1 3.9576 -6.5254 0.1558 34 1 3.6612 -7.9485 2.1651 35 1 2.4721 -8.9402 1.2872 36 1 2.8085 -3.6665 0.9320 37 1 2.9331 -3.5574 -0.8415 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594807077.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:22 Heat of formation + Delta-G solvation = -259.127414 kcal Electronic energy + Delta-G solvation = -25294.629688 eV Core-core repulsion = 20975.705861 eV Total energy + Delta-G solvation = -4318.923828 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.14931 -48.65040 -48.62444 -39.26301 -38.28876 -37.06541 -35.25072 -35.17457 -32.72120 -31.82475 -27.89900 -27.01410 -25.17344 -23.60739 -23.32371 -21.13419 -19.97758 -19.61766 -19.31415 -19.05769 -18.38684 -17.88981 -17.26748 -17.20209 -16.55184 -16.04006 -15.53570 -15.41282 -15.13295 -15.08042 -14.95873 -14.85120 -14.77313 -14.74825 -14.39833 -14.31204 -13.85290 -13.79924 -13.29427 -13.26717 -13.21585 -12.90326 -12.79291 -12.75755 -12.66118 -12.47253 -11.87098 -11.80729 -11.75126 -11.54715 -11.01893 -10.72677 -10.39716 -9.71861 -8.05046 -6.20022 -0.88247 1.43300 1.45788 1.54812 1.57211 1.74655 2.46387 2.65037 2.70994 2.98379 2.99612 3.09659 3.22166 3.53894 3.70868 3.86066 4.16270 4.28118 4.31538 4.39860 4.58171 4.61280 4.68329 4.85288 4.90911 5.02228 5.12769 5.32386 5.38708 5.57335 5.68290 5.76406 6.02469 6.21191 6.40693 6.93282 7.48385 8.98970 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.022707 B = 0.003570 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.811478 B = 7841.730808 C = 8388.134809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.287 1.287 7 C -0.531 4.531 8 H 0.062 0.938 9 C 0.033 3.967 10 H -0.016 1.016 11 C -0.104 4.104 12 C -0.129 4.129 13 C 0.120 3.880 14 N -0.998 5.998 15 S 2.617 3.383 16 O -0.985 6.985 17 O -0.977 6.977 18 C -0.625 4.625 19 C -0.169 4.169 20 C 0.467 3.533 21 F -0.185 7.185 22 F -0.184 7.184 23 F -0.183 7.183 24 C 0.133 3.867 25 H 0.259 0.741 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.034 0.966 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.075 0.925 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.387 -18.870 -2.913 20.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.214 1.214 7 C -0.570 4.570 8 H 0.081 0.919 9 C 0.013 3.987 10 H 0.002 0.998 11 C -0.142 4.142 12 C -0.168 4.168 13 C -0.005 4.005 14 N -0.836 5.836 15 S 2.714 3.286 16 O -0.976 6.976 17 O -0.968 6.968 18 C -0.755 4.755 19 C -0.209 4.209 20 C 0.412 3.588 21 F -0.167 7.167 22 F -0.165 7.165 23 F -0.164 7.164 24 C 0.009 3.991 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.189 0.811 33 H 0.180 0.820 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.093 0.907 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.779 -18.899 -2.131 20.190 hybrid contribution 0.680 1.102 -0.306 1.330 sum 7.459 -17.797 -2.437 19.450 Atomic orbital electron populations 1.70051 1.07317 1.26916 1.51478 1.25745 0.95602 1.02459 0.94915 0.85556 0.79337 0.79751 0.77279 1.18661 1.20673 1.21352 1.21564 0.93446 0.91661 1.50296 0.91934 1.18921 0.93611 0.92326 0.93889 0.99778 1.21394 0.98799 0.96331 0.97689 1.21886 0.98033 0.95878 1.01050 1.21613 0.90479 0.99053 0.89338 1.57519 1.53674 1.27524 1.44899 1.04586 0.76051 0.74103 0.73849 1.93573 1.84447 1.73382 1.46200 1.93545 1.42077 1.74406 1.86744 1.30603 1.21520 1.10673 1.12751 1.22756 0.99776 0.96754 1.01571 1.20236 0.83576 0.78780 0.76220 1.93197 1.53698 1.73911 1.95876 1.93206 1.94613 1.57844 1.70841 1.93193 1.91007 1.89107 1.43118 1.21526 0.94024 0.81945 1.01652 0.93221 0.93839 0.92576 0.94742 0.90003 0.88065 0.88788 0.81125 0.81982 0.84374 0.83776 0.90669 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.86 11.31 21.45 0.24 -52.62 16 2 C 0.01 0.62 5.30 84.65 0.45 1.06 16 3 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 7 C -0.53 -28.24 8.56 25.60 0.22 -28.02 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 9 C 0.03 1.59 2.25 -11.47 -0.03 1.56 16 10 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 11 C -0.10 -4.64 4.96 30.62 0.15 -4.49 16 12 C -0.13 -4.61 6.08 30.67 0.19 -4.42 16 13 C 0.12 3.30 6.43 86.36 0.56 3.86 16 14 N -1.00 -30.65 3.22 -513.10 -1.65 -32.30 16 15 S 2.62 69.78 5.45 -56.49 -0.31 69.47 16 16 O -0.99 -34.46 16.59 -127.65 -2.12 -36.57 16 17 O -0.98 -29.86 16.59 -127.65 -2.12 -31.98 16 18 C -0.63 -9.42 5.93 71.98 0.43 -8.99 16 19 C -0.17 -2.25 5.27 30.60 0.16 -2.09 16 20 C 0.47 7.17 3.16 71.98 0.23 7.40 16 21 F -0.19 -3.27 16.80 44.97 0.76 -2.51 16 22 F -0.18 -3.02 17.32 44.97 0.78 -2.24 16 23 F -0.18 -2.99 16.80 44.97 0.76 -2.23 16 24 C 0.13 4.98 5.65 86.35 0.49 5.47 16 25 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 26 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 2.94 6.04 -2.39 -0.01 2.92 16 28 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.10 2.39 6.86 -2.39 -0.02 2.37 16 31 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.17 1.75 7.80 -2.39 -0.02 1.73 16 33 H 0.16 2.07 7.80 -2.39 -0.02 2.05 16 34 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 2.86 6.86 -2.39 -0.02 2.84 16 37 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -70.82 325.08 2.29 -68.53 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 1.09 Total: 6.22 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 2.84 Total: -28.66 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -1.41 Total: -84.92 kcal Atomic # 8 Polarization: -64.32 SS G_CDS: -4.24 Total: -68.56 kcal Atomic # 9 Polarization: -9.27 SS G_CDS: 2.29 Total: -6.98 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 69.78 SS G_CDS: -0.31 Total: 69.47 kcal Total: -70.82 2.29 -68.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807077.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.602 kcal (2) G-P(sol) polarization free energy of solvation -70.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds