Wall clock time and date at job start Tue Mar 31 2020 11:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00264 * 2 1 4 4 H 1.48496 * 109.47016 * 269.99675 * 3 2 1 5 5 H 1.48500 * 109.47168 * 29.99857 * 3 2 1 6 6 H 1.48502 * 109.46959 * 149.99723 * 3 2 1 7 7 C 1.37877 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00031 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.52513 * 60.08315 * 9 7 2 11 11 C 1.53046 * 109.49738 * 300.00253 * 9 7 2 12 12 C 1.53039 * 109.52798 * 178.67638 * 11 9 7 13 13 C 1.53195 * 109.31257 * 61.36716 * 12 11 9 14 14 N 1.46919 * 108.77845 * 305.36660 * 13 12 11 15 15 S 1.65596 * 120.63444 * 233.62795 * 14 13 12 16 16 O 1.42098 * 104.28054 * 206.07373 * 15 14 13 17 17 O 1.42101 * 104.27452 * 333.93041 * 15 14 13 18 18 C 1.81398 * 104.44933 * 90.00150 * 15 14 13 19 19 C 1.53004 * 109.47171 * 180.02562 * 18 15 14 20 20 C 1.52998 * 109.47202 * 179.97438 * 19 18 15 21 21 F 1.39907 * 109.47099 * 59.99931 * 20 19 18 22 22 F 1.39892 * 109.47415 * 179.97438 * 20 19 18 23 23 F 1.39900 * 109.47301 * 300.00492 * 20 19 18 24 24 C 1.46931 * 118.73612 * 53.60997 * 14 13 12 25 25 H 0.97009 * 119.99736 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46115 * 58.66091 * 11 9 7 27 27 H 1.09004 * 109.45806 * 298.68975 * 11 9 7 28 28 H 1.08997 * 109.50134 * 181.32407 * 12 11 9 29 29 H 1.09006 * 109.49908 * 301.38992 * 12 11 9 30 30 H 1.08997 * 109.58182 * 65.15696 * 13 12 11 31 31 H 1.09002 * 109.58573 * 185.43694 * 13 12 11 32 32 H 1.09001 * 109.46811 * 300.00059 * 18 15 14 33 33 H 1.08991 * 109.47260 * 60.00097 * 18 15 14 34 34 H 1.09001 * 109.46997 * 299.99573 * 19 18 15 35 35 H 1.08999 * 109.47096 * 59.99998 * 19 18 15 36 36 H 1.08998 * 109.58959 * 66.17523 * 24 14 13 37 37 H 1.09003 * 109.58181 * 186.46006 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6247 -2.5591 -0.8884 11 6 0.3712 -2.5800 1.2515 12 6 -0.4192 -3.8904 1.2368 13 6 0.5568 -5.0710 1.2553 14 7 1.4997 -4.9226 0.1384 15 16 1.7170 -6.1505 -0.9513 16 8 3.0328 -5.9489 -1.4486 17 8 1.3796 -7.3255 -0.2270 18 6 0.4901 -5.8275 -2.2477 19 6 0.5916 -6.9078 -3.3265 20 6 -0.4437 -6.6357 -4.4197 21 9 -0.2004 -5.3819 -4.9908 22 9 -0.3506 -7.6231 -5.4063 23 9 -1.7265 -6.6528 -3.8617 24 6 2.2460 -3.6639 0.0065 25 1 -0.4850 0.8401 -0.0004 26 1 -0.3212 -1.7383 1.2632 27 1 1.0002 -2.5452 2.1411 28 1 -1.0630 -3.9368 2.1151 29 1 -1.0300 -3.9368 0.3351 30 1 1.1045 -5.0775 2.1976 31 1 0.0036 -6.0041 1.1477 32 1 -0.5096 -5.8411 -1.8134 33 1 0.6798 -4.8506 -2.6923 34 1 1.5912 -6.8946 -3.7609 35 1 0.4015 -7.8845 -2.8816 36 1 2.9315 -3.5556 0.8470 37 1 2.8097 -3.6694 -0.9265 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594807078.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:25 Heat of formation + Delta-G solvation = -240.177318 kcal Electronic energy + Delta-G solvation = -25640.063793 eV Core-core repulsion = 21321.961703 eV Total energy + Delta-G solvation = -4318.102090 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.28791 -47.80339 -47.73530 -37.83228 -37.08346 -35.88882 -34.40317 -33.39278 -31.20229 -30.18735 -27.00232 -25.18856 -23.77938 -22.74462 -21.75367 -19.59076 -18.87603 -18.75739 -18.39941 -17.91202 -17.10347 -16.28903 -16.13742 -16.06135 -15.09687 -14.69867 -14.66993 -14.28858 -14.15471 -13.97729 -13.90096 -13.86973 -13.60705 -13.29809 -13.05014 -12.88324 -12.81097 -12.41700 -12.29151 -12.06672 -11.98859 -11.87967 -11.42005 -11.04093 -10.92947 -10.90384 -10.74797 -10.33503 -10.00947 -9.88143 -9.47291 -8.93024 -8.52624 -8.24966 -6.08666 -4.16254 0.26824 2.51157 2.76690 3.25818 3.33249 3.36402 3.52449 3.54787 3.76517 3.97438 4.16432 4.36595 4.42003 4.58340 4.83141 5.08703 5.11664 5.22116 5.46797 5.60270 5.71295 5.91861 6.18044 6.24364 6.39090 6.51427 6.57125 6.77093 6.91149 7.10831 7.34613 7.62934 7.83138 8.01017 8.31310 8.87371 9.49592 10.96558 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.014670 B = 0.004525 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.230229 B = 6186.184969 C = 7016.403647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.037 3.963 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.137 4.137 13 C 0.124 3.876 14 N -0.988 5.988 15 S 2.617 3.383 16 O -0.949 6.949 17 O -0.958 6.958 18 C -0.653 4.653 19 C -0.157 4.157 20 C 0.462 3.538 21 F -0.177 7.177 22 F -0.184 7.184 23 F -0.180 7.180 24 C 0.124 3.876 25 H 0.261 0.739 26 H 0.095 0.905 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.065 0.935 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.985 -13.130 -4.317 13.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.017 3.983 10 H 0.047 0.953 11 C -0.149 4.149 12 C -0.176 4.176 13 C -0.001 4.001 14 N -0.827 5.827 15 S 2.707 3.293 16 O -0.940 6.940 17 O -0.949 6.949 18 C -0.779 4.779 19 C -0.197 4.197 20 C 0.407 3.593 21 F -0.158 7.158 22 F -0.165 7.165 23 F -0.161 7.161 24 C 0.001 3.999 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.162 0.838 33 H 0.168 0.832 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.083 0.917 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.534 -13.696 -4.278 14.431 hybrid contribution -0.435 1.509 -0.506 1.650 sum -1.969 -12.187 -4.785 13.240 Atomic orbital electron populations 1.69865 1.05909 1.26570 1.50324 1.24931 0.94840 0.99108 0.94841 0.86591 0.79902 0.83341 0.78152 1.20678 1.21280 1.19835 1.21095 0.93084 0.90259 1.51194 0.92325 1.19017 0.92973 0.91274 0.95013 0.95274 1.21587 0.99398 0.95316 0.98567 1.22041 0.97636 0.96979 1.00924 1.21438 0.90808 0.98704 0.89156 1.57619 1.54421 1.32038 1.38669 1.04824 0.75501 0.73902 0.75040 1.93600 1.33117 1.85640 1.81619 1.93573 1.85592 1.46620 1.69082 1.30925 1.22383 1.08127 1.16431 1.22543 1.00748 1.01594 0.94796 1.20213 0.82066 0.74325 0.82662 1.93225 1.94159 1.42250 1.86166 1.93192 1.96209 1.62302 1.64793 1.93197 1.41731 1.96207 1.84979 1.21880 0.94596 0.81756 1.01684 0.92925 0.88711 0.94448 0.92431 0.92540 0.91321 0.90536 0.83771 0.83184 0.85805 0.85969 0.91676 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.83 11.31 55.43 0.63 -23.20 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.52 -13.13 8.56 -34.44 -0.29 -13.42 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.04 0.83 2.25 -91.65 -0.21 0.62 16 10 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 11 C -0.11 -2.33 4.96 -26.69 -0.13 -2.46 16 12 C -0.14 -2.26 6.08 -26.61 -0.16 -2.42 16 13 C 0.12 1.86 6.31 -3.71 -0.02 1.84 16 14 N -0.99 -15.91 3.22 -113.52 -0.37 -16.28 16 15 S 2.62 37.26 5.41 -107.50 -0.58 36.68 16 16 O -0.95 -16.03 16.72 -57.54 -0.96 -16.99 16 17 O -0.96 -14.94 16.73 -57.54 -0.96 -15.90 16 18 C -0.65 -7.43 5.93 37.16 0.22 -7.20 16 19 C -0.16 -1.51 5.27 -26.73 -0.14 -1.65 16 20 C 0.46 5.06 3.16 37.16 0.12 5.18 16 21 F -0.18 -2.22 16.80 2.25 0.04 -2.18 16 22 F -0.18 -1.97 17.32 2.25 0.04 -1.93 16 23 F -0.18 -2.12 16.80 2.25 0.04 -2.08 16 24 C 0.12 2.36 5.54 -3.71 -0.02 2.34 16 25 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 26 H 0.09 2.29 6.04 -51.93 -0.31 1.97 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 0.99 7.10 -51.93 -0.37 0.62 16 32 H 0.14 1.46 7.80 -51.92 -0.41 1.06 16 33 H 0.15 1.74 7.80 -51.93 -0.41 1.34 16 34 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.08 1.43 7.09 -51.93 -0.37 1.06 16 LS Contribution 325.56 15.07 4.91 4.91 Total: -1.00 -29.90 325.56 -7.77 -37.67 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -4.78 Total: -0.40 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -0.74 Total: -15.60 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.26 Total: -39.47 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -1.92 Total: -32.89 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.11 Total: -6.19 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 37.26 SS G_CDS: -0.58 Total: 36.68 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.90 -7.77 -37.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807078.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.510 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds