Wall clock time and date at job start Tue Mar 31 2020 11:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00264 * 2 1 4 4 H 1.48496 * 109.47016 * 269.99675 * 3 2 1 5 5 H 1.48500 * 109.47168 * 29.99857 * 3 2 1 6 6 H 1.48502 * 109.46959 * 149.99723 * 3 2 1 7 7 C 1.37877 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00031 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.52513 * 60.08315 * 9 7 2 11 11 C 1.53046 * 109.49738 * 300.00253 * 9 7 2 12 12 C 1.53039 * 109.52798 * 178.67638 * 11 9 7 13 13 C 1.53195 * 109.31257 * 61.36716 * 12 11 9 14 14 N 1.46919 * 108.77845 * 305.36660 * 13 12 11 15 15 S 1.65596 * 120.63444 * 233.62795 * 14 13 12 16 16 O 1.42098 * 104.28054 * 206.07373 * 15 14 13 17 17 O 1.42101 * 104.27452 * 333.93041 * 15 14 13 18 18 C 1.81398 * 104.44933 * 90.00150 * 15 14 13 19 19 C 1.53004 * 109.47171 * 180.02562 * 18 15 14 20 20 C 1.52998 * 109.47202 * 179.97438 * 19 18 15 21 21 F 1.39907 * 109.47099 * 59.99931 * 20 19 18 22 22 F 1.39892 * 109.47415 * 179.97438 * 20 19 18 23 23 F 1.39900 * 109.47301 * 300.00492 * 20 19 18 24 24 C 1.46931 * 118.73612 * 53.60997 * 14 13 12 25 25 H 0.97009 * 119.99736 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46115 * 58.66091 * 11 9 7 27 27 H 1.09004 * 109.45806 * 298.68975 * 11 9 7 28 28 H 1.08997 * 109.50134 * 181.32407 * 12 11 9 29 29 H 1.09006 * 109.49908 * 301.38992 * 12 11 9 30 30 H 1.08997 * 109.58182 * 65.15696 * 13 12 11 31 31 H 1.09002 * 109.58573 * 185.43694 * 13 12 11 32 32 H 1.09001 * 109.46811 * 300.00059 * 18 15 14 33 33 H 1.08991 * 109.47260 * 60.00097 * 18 15 14 34 34 H 1.09001 * 109.46997 * 299.99573 * 19 18 15 35 35 H 1.08999 * 109.47096 * 59.99998 * 19 18 15 36 36 H 1.08998 * 109.58959 * 66.17523 * 24 14 13 37 37 H 1.09003 * 109.58181 * 186.46006 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6247 -2.5591 -0.8884 11 6 0.3712 -2.5800 1.2515 12 6 -0.4192 -3.8904 1.2368 13 6 0.5568 -5.0710 1.2553 14 7 1.4997 -4.9226 0.1384 15 16 1.7170 -6.1505 -0.9513 16 8 3.0328 -5.9489 -1.4486 17 8 1.3796 -7.3255 -0.2270 18 6 0.4901 -5.8275 -2.2477 19 6 0.5916 -6.9078 -3.3265 20 6 -0.4437 -6.6357 -4.4197 21 9 -0.2004 -5.3819 -4.9908 22 9 -0.3506 -7.6231 -5.4063 23 9 -1.7265 -6.6528 -3.8617 24 6 2.2460 -3.6639 0.0065 25 1 -0.4850 0.8401 -0.0004 26 1 -0.3212 -1.7383 1.2632 27 1 1.0002 -2.5452 2.1411 28 1 -1.0630 -3.9368 2.1151 29 1 -1.0300 -3.9368 0.3351 30 1 1.1045 -5.0775 2.1976 31 1 0.0036 -6.0041 1.1477 32 1 -0.5096 -5.8411 -1.8134 33 1 0.6798 -4.8506 -2.6923 34 1 1.5912 -6.8946 -3.7609 35 1 0.4015 -7.8845 -2.8816 36 1 2.9315 -3.5556 0.8470 37 1 2.8097 -3.6694 -0.9265 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594807078.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:24 Heat of formation + Delta-G solvation = -259.074072 kcal Electronic energy + Delta-G solvation = -25640.883218 eV Core-core repulsion = 21321.961703 eV Total energy + Delta-G solvation = -4318.921514 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.16331 -48.66335 -48.64349 -39.29173 -38.29889 -37.10606 -35.27408 -35.15469 -32.68724 -31.83966 -27.91413 -27.00409 -25.19001 -23.64145 -23.28212 -21.04589 -19.94109 -19.63029 -19.50268 -19.01783 -18.37594 -17.88558 -17.30316 -17.21931 -16.57217 -16.02369 -15.55108 -15.41243 -15.14458 -15.10544 -14.99231 -14.81485 -14.78325 -14.76934 -14.38888 -14.29765 -13.91807 -13.78814 -13.31933 -13.29797 -13.22319 -12.87714 -12.80576 -12.74273 -12.64661 -12.51405 -12.00896 -11.83882 -11.75965 -11.50317 -11.01569 -10.73008 -10.38974 -9.73438 -8.05683 -6.18856 -0.86273 1.43514 1.45960 1.52524 1.55560 1.72997 2.46231 2.59872 2.69533 2.95890 2.96793 3.08307 3.22176 3.54320 3.68976 3.83226 4.13969 4.27323 4.29937 4.39997 4.57310 4.63162 4.65237 4.84320 4.93266 4.99897 5.13702 5.33534 5.40908 5.56765 5.68325 5.75177 6.02420 6.20304 6.43129 6.92712 7.49225 8.97444 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.014670 B = 0.004525 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.230229 B = 6186.184969 C = 7016.403647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.019 3.981 3 Si 0.946 3.054 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.034 3.966 10 H 0.009 0.991 11 C -0.107 4.107 12 C -0.129 4.129 13 C 0.122 3.878 14 N -0.996 5.996 15 S 2.632 3.368 16 O -0.978 6.978 17 O -0.968 6.968 18 C -0.640 4.640 19 C -0.164 4.164 20 C 0.463 3.537 21 F -0.189 7.189 22 F -0.181 7.181 23 F -0.185 7.185 24 C 0.136 3.864 25 H 0.259 0.741 26 H 0.060 0.940 27 H 0.029 0.971 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.161 0.839 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.060 0.940 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.111 -14.486 -4.433 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.180 4.180 3 Si 0.773 3.227 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.573 4.573 8 H 0.073 0.927 9 C 0.014 3.986 10 H 0.027 0.973 11 C -0.145 4.145 12 C -0.168 4.168 13 C -0.003 4.003 14 N -0.833 5.833 15 S 2.727 3.273 16 O -0.969 6.969 17 O -0.959 6.959 18 C -0.769 4.769 19 C -0.203 4.203 20 C 0.408 3.592 21 F -0.170 7.170 22 F -0.163 7.163 23 F -0.166 7.166 24 C 0.011 3.989 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.179 0.821 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.078 0.922 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.633 -15.066 -4.362 15.769 hybrid contribution -0.434 1.897 -0.522 2.015 sum -2.067 -13.169 -4.884 14.197 Atomic orbital electron populations 1.69992 1.06934 1.26951 1.51279 1.25593 0.95554 1.01911 0.94922 0.85735 0.78887 0.80039 0.78035 1.20490 1.21244 1.19392 1.21510 0.93255 0.91962 1.50560 0.92696 1.18976 0.93401 0.91530 0.94684 0.97264 1.21410 0.98798 0.96770 0.97512 1.21945 0.97711 0.95062 1.02081 1.21567 0.90471 0.99054 0.89211 1.57591 1.54635 1.30993 1.40108 1.04272 0.75218 0.72975 0.74884 1.93565 1.35564 1.85810 1.81954 1.93558 1.85747 1.46696 1.69867 1.30728 1.21733 1.08800 1.15664 1.22746 1.01396 1.02144 0.93987 1.20357 0.82087 0.73858 0.82902 1.93206 1.94215 1.43175 1.86450 1.93197 1.96188 1.62101 1.64797 1.93189 1.42243 1.96196 1.85015 1.21496 0.93770 0.82010 1.01582 0.93156 0.92123 0.95203 0.90298 0.92354 0.90758 0.87643 0.82099 0.83400 0.84064 0.83272 0.92152 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.86 11.31 21.45 0.24 -49.62 16 2 C 0.02 1.02 5.30 84.66 0.45 1.47 16 3 Si 0.95 42.01 29.54 68.60 2.03 44.04 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.53 -27.49 8.56 25.60 0.22 -27.27 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 9 C 0.03 1.53 2.25 -11.46 -0.03 1.51 16 10 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 11 C -0.11 -4.51 4.96 30.62 0.15 -4.36 16 12 C -0.13 -4.07 6.08 30.67 0.19 -3.89 16 13 C 0.12 3.36 6.31 86.36 0.54 3.91 16 14 N -1.00 -30.55 3.22 -513.07 -1.65 -32.21 16 15 S 2.63 69.56 5.41 -56.49 -0.31 69.25 16 16 O -0.98 -31.72 16.72 -127.65 -2.13 -33.86 16 17 O -0.97 -27.47 16.73 -127.65 -2.14 -29.61 16 18 C -0.64 -13.02 5.93 71.98 0.43 -12.59 16 19 C -0.16 -2.68 5.27 30.59 0.16 -2.51 16 20 C 0.46 9.13 3.16 71.98 0.23 9.36 16 21 F -0.19 -4.48 16.80 44.97 0.76 -3.72 16 22 F -0.18 -3.50 17.32 44.97 0.78 -2.73 16 23 F -0.18 -3.96 16.80 44.97 0.76 -3.20 16 24 C 0.14 5.13 5.54 86.36 0.48 5.60 16 25 H 0.26 13.64 8.31 -92.70 -0.77 12.87 16 26 H 0.06 2.99 6.04 -2.39 -0.01 2.98 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.06 1.81 8.14 -2.38 -0.02 1.80 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.11 2.35 7.10 -2.39 -0.02 2.33 16 32 H 0.16 2.78 7.80 -2.39 -0.02 2.76 16 33 H 0.15 3.20 7.80 -2.40 -0.02 3.18 16 34 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.15 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.08 2.87 7.09 -2.39 -0.02 2.86 16 Total: -1.00 -64.02 325.56 2.24 -61.78 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.09 Total: 8.66 kcal Atomic # 6 Polarization: -31.61 SS G_CDS: 2.82 Total: -28.79 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -1.41 Total: -81.82 kcal Atomic # 8 Polarization: -59.20 SS G_CDS: -4.27 Total: -63.47 kcal Atomic # 9 Polarization: -11.94 SS G_CDS: 2.29 Total: -9.65 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 69.56 SS G_CDS: -0.31 Total: 69.25 kcal Total: -64.02 2.24 -61.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807078.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.295 kcal (2) G-P(sol) polarization free energy of solvation -64.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds