Wall clock time and date at job start Tue Mar 31 2020 10:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65596 * 119.99958 * 2 1 4 4 O 1.42106 * 106.39925 * 178.54121 * 3 2 1 5 5 O 1.42088 * 106.40605 * 311.45928 * 3 2 1 6 6 C 1.76199 * 107.21538 * 65.00395 * 3 2 1 7 7 C 1.38234 * 119.99773 * 269.72119 * 6 3 2 8 8 C 1.38242 * 119.99818 * 179.77163 * 7 6 3 9 9 C 1.38234 * 119.99999 * 0.50197 * 8 7 6 10 10 C 1.50700 * 119.99915 * 179.72567 * 9 8 7 11 11 S 1.81398 * 109.47245 * 270.02425 * 10 9 8 12 12 C 1.81394 * 102.99968 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47111 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47198 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99860 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00112 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00003 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 119.99956 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47354 * 90.00154 * 18 16 14 20 20 H 1.48505 * 109.47228 * 210.00148 * 18 16 14 21 21 H 1.48500 * 109.47258 * 330.00188 * 18 16 14 22 22 C 1.38232 * 119.99983 * 359.75459 * 9 8 7 23 23 C 1.38235 * 120.00052 * 90.00141 * 6 3 2 24 24 H 1.09001 * 109.47060 * 300.00197 * 1 2 3 25 25 H 1.09004 * 109.47073 * 59.99686 * 1 2 3 26 26 H 1.09000 * 109.47212 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99251 * 180.02562 * 2 1 3 28 28 H 1.07999 * 120.00231 * 359.97438 * 7 6 3 29 29 H 1.07996 * 119.99644 * 180.23069 * 8 7 6 30 30 H 1.08990 * 109.46908 * 30.02872 * 10 9 8 31 31 H 1.09004 * 109.46829 * 150.02802 * 10 9 8 32 32 H 1.08999 * 109.47441 * 299.99559 * 12 11 10 33 33 H 1.09001 * 109.47430 * 60.00127 * 12 11 10 34 34 H 1.08997 * 109.47334 * 299.99976 * 13 12 11 35 35 H 1.08997 * 109.47251 * 60.00128 * 13 12 11 36 36 H 0.96998 * 119.99772 * 179.97438 * 17 16 14 37 37 H 1.08000 * 120.00506 * 179.97438 * 22 9 8 38 38 H 1.07994 * 120.00328 * 359.97438 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6739 1.1002 0.0347 5 8 1.7121 2.2329 -1.0215 6 6 1.9379 2.2413 1.5254 7 6 0.8623 3.1049 1.6163 8 6 0.5808 3.7346 2.8144 9 6 1.3811 3.5087 3.9187 10 6 1.0779 4.1999 5.2230 11 16 1.9585 5.7845 5.2867 12 6 1.4767 6.4545 6.9020 13 6 2.1479 7.8134 7.1112 14 6 1.7471 8.3704 8.4529 15 1 1.0807 7.8109 9.0926 16 6 2.2313 9.5942 8.8639 17 7 1.8819 10.0801 10.0350 18 14 3.3845 10.5616 7.7578 19 1 2.5910 11.4516 6.8727 20 1 4.2992 11.3814 8.5925 21 1 4.1804 9.6210 6.9289 22 6 2.4598 2.6492 3.8263 23 6 2.7382 2.0155 2.6296 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.9500 -0.8401 -0.0004 28 1 0.2399 3.2852 0.7523 29 1 -0.2617 4.4064 2.8864 30 1 0.0052 4.3770 5.2995 31 1 1.4022 3.5704 6.0517 32 1 0.3940 6.5754 6.9369 33 1 1.7913 5.7685 7.6884 34 1 3.2307 7.6931 7.0762 35 1 1.8329 8.4992 6.3248 36 1 2.2228 10.9409 10.3242 37 1 3.0853 2.4729 4.6889 38 1 3.5809 1.3440 2.5576 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596425352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:45 Heat of formation + Delta-G solvation = -60.511868 kcal Electronic energy + Delta-G solvation = -20535.220082 eV Core-core repulsion = 17209.518482 eV Total energy + Delta-G solvation = -3325.701600 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.63969 -37.57353 -36.18357 -35.44833 -33.78066 -33.35578 -31.37367 -31.30003 -27.76839 -26.47020 -25.57596 -23.19453 -22.39660 -20.75769 -19.94870 -18.43276 -17.89119 -17.05440 -16.72868 -16.10848 -15.86448 -15.55478 -15.01417 -14.68964 -14.44426 -14.23114 -14.15374 -13.84252 -13.76861 -13.30376 -12.91514 -12.85163 -12.73953 -12.42975 -12.41445 -12.34359 -12.05303 -11.79122 -11.51914 -11.20559 -11.15424 -10.36948 -10.26770 -10.12129 -10.08577 -9.65304 -9.33621 -9.27874 -9.22527 -8.64203 -7.40764 -6.15170 -4.15674 0.00536 0.38755 1.01597 1.95126 2.65198 2.93961 3.24788 3.27082 3.34691 3.39832 3.47915 3.99380 4.34294 4.37488 4.40809 4.53269 4.58494 4.86917 4.95044 5.00981 5.17083 5.18813 5.24520 5.28808 5.29929 5.47425 5.64343 5.75420 5.78139 5.82376 5.90342 6.16331 6.43098 6.44683 6.51475 7.04259 7.16396 7.60511 8.37536 8.85867 9.45354 10.97422 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.034066 B = 0.002262 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.744568 B =12377.224315 C =12660.898346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.122 6.122 3 S 2.699 3.301 4 O -0.959 6.959 5 O -0.956 6.956 6 C -0.681 4.681 7 C -0.021 4.021 8 C -0.125 4.125 9 C -0.002 4.002 10 C -0.064 4.064 11 S -0.274 6.274 12 C -0.053 4.053 13 C 0.003 3.997 14 C -0.522 4.522 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.879 3.121 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.263 1.263 22 C -0.125 4.125 23 C -0.018 4.018 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.419 0.581 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.026 0.974 35 H 0.022 0.978 36 H 0.265 0.735 37 H 0.136 0.864 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 -23.600 -19.099 30.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.788 3.212 4 O -0.949 6.949 5 O -0.946 6.946 6 C -0.770 4.770 7 C -0.041 4.041 8 C -0.145 4.145 9 C -0.004 4.004 10 C -0.212 4.212 11 S -0.043 6.043 12 C -0.201 4.201 13 C -0.036 4.036 14 C -0.562 4.562 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.537 5.537 18 Si 0.706 3.294 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.188 1.188 22 C -0.145 4.145 23 C -0.037 4.037 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.253 0.747 28 H 0.159 0.841 29 H 0.154 0.846 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.045 0.955 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.154 0.846 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.039 -22.507 -20.372 30.509 hybrid contribution -0.390 -0.116 1.351 1.411 sum -3.429 -22.623 -19.021 29.755 Atomic orbital electron populations 1.21512 0.78376 1.04315 1.02185 1.55336 1.16257 1.24419 1.92122 1.01755 0.72841 0.72664 0.73936 1.93601 1.30716 1.83387 1.87213 1.93589 1.78711 1.68339 1.53968 1.30778 1.07928 1.16724 1.21522 1.20892 0.93533 0.91727 0.97929 1.21214 1.00762 1.00329 0.92228 1.19702 0.93680 0.92837 0.94181 1.22384 1.03640 0.97867 0.97280 1.87185 1.66180 1.20243 1.30734 1.23538 1.03328 1.01920 0.91285 1.19367 0.96328 0.89861 0.98054 1.20933 1.30279 1.04374 1.00593 0.90816 1.24965 0.95948 0.97215 0.94988 1.69892 1.44783 1.19344 1.19638 0.86781 0.81398 0.80369 0.80876 1.20050 1.21140 1.18794 1.21218 0.97311 0.97486 0.98532 1.20865 0.95972 0.95841 0.91040 0.92038 0.91224 0.89861 0.74737 0.84112 0.84585 0.88819 0.88830 0.90622 0.90600 0.95539 0.95979 0.92473 0.84596 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.32 11.14 59.85 0.67 0.98 16 2 N -1.12 -5.98 6.19 -16.63 -0.10 -6.08 16 3 S 2.70 24.49 5.74 -107.50 -0.62 23.87 16 4 O -0.96 -11.29 17.28 -57.18 -0.99 -12.28 16 5 O -0.96 -11.33 17.00 -57.18 -0.97 -12.30 16 6 C -0.68 -6.56 5.95 -39.58 -0.24 -6.79 16 7 C -0.02 -0.20 9.52 -39.58 -0.38 -0.58 16 8 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 9 C 0.00 -0.03 5.14 -104.63 -0.54 -0.57 16 10 C -0.06 -0.77 6.07 36.01 0.22 -0.55 16 11 S -0.27 -4.57 21.72 -107.50 -2.33 -6.91 16 12 C -0.05 -1.02 5.88 37.16 0.22 -0.80 16 13 C 0.00 0.07 4.05 -27.88 -0.11 -0.04 16 14 C -0.52 -14.54 9.66 -34.44 -0.33 -14.88 16 15 H 0.07 2.17 7.99 -52.49 -0.42 1.76 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 18 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 22 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 23 C -0.02 -0.17 9.52 -39.58 -0.38 -0.55 16 24 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 26 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.42 1.39 8.96 -34.48 -0.31 1.08 16 28 H 0.14 1.08 7.61 -52.49 -0.40 0.68 16 29 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 30 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 31 H 0.09 1.01 8.09 -51.92 -0.42 0.59 16 32 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 33 H 0.08 1.41 8.14 -51.92 -0.42 0.98 16 34 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 35 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.14 1.13 7.62 -52.49 -0.40 0.73 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -35.29 350.12 -10.63 -45.91 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -5.26 Total: -2.81 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -1.73 Total: -25.19 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.67 Total: -32.51 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -1.96 Total: -24.59 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Atomic # 16 Polarization: 19.92 SS G_CDS: -2.95 Total: 16.97 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.29 -10.63 -45.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596425352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.598 kcal (2) G-P(sol) polarization free energy of solvation -35.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds