Wall clock time and date at job start Tue Mar 31 2020 10:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65596 * 119.99958 * 2 1 4 4 O 1.42106 * 106.39925 * 178.54121 * 3 2 1 5 5 O 1.42088 * 106.40605 * 311.45928 * 3 2 1 6 6 C 1.76199 * 107.21538 * 65.00395 * 3 2 1 7 7 C 1.38234 * 119.99773 * 269.72119 * 6 3 2 8 8 C 1.38242 * 119.99818 * 179.77163 * 7 6 3 9 9 C 1.38234 * 119.99999 * 0.50197 * 8 7 6 10 10 C 1.50700 * 119.99915 * 179.72567 * 9 8 7 11 11 S 1.81398 * 109.47245 * 270.02425 * 10 9 8 12 12 C 1.81394 * 102.99968 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47111 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47198 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99860 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00112 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00003 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 119.99956 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47354 * 90.00154 * 18 16 14 20 20 H 1.48505 * 109.47228 * 210.00148 * 18 16 14 21 21 H 1.48500 * 109.47258 * 330.00188 * 18 16 14 22 22 C 1.38232 * 119.99983 * 359.75459 * 9 8 7 23 23 C 1.38235 * 120.00052 * 90.00141 * 6 3 2 24 24 H 1.09001 * 109.47060 * 300.00197 * 1 2 3 25 25 H 1.09004 * 109.47073 * 59.99686 * 1 2 3 26 26 H 1.09000 * 109.47212 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99251 * 180.02562 * 2 1 3 28 28 H 1.07999 * 120.00231 * 359.97438 * 7 6 3 29 29 H 1.07996 * 119.99644 * 180.23069 * 8 7 6 30 30 H 1.08990 * 109.46908 * 30.02872 * 10 9 8 31 31 H 1.09004 * 109.46829 * 150.02802 * 10 9 8 32 32 H 1.08999 * 109.47441 * 299.99559 * 12 11 10 33 33 H 1.09001 * 109.47430 * 60.00127 * 12 11 10 34 34 H 1.08997 * 109.47334 * 299.99976 * 13 12 11 35 35 H 1.08997 * 109.47251 * 60.00128 * 13 12 11 36 36 H 0.96998 * 119.99772 * 179.97438 * 17 16 14 37 37 H 1.08000 * 120.00506 * 179.97438 * 22 9 8 38 38 H 1.07994 * 120.00328 * 359.97438 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6739 1.1002 0.0347 5 8 1.7121 2.2329 -1.0215 6 6 1.9379 2.2413 1.5254 7 6 0.8623 3.1049 1.6163 8 6 0.5808 3.7346 2.8144 9 6 1.3811 3.5087 3.9187 10 6 1.0779 4.1999 5.2230 11 16 1.9585 5.7845 5.2867 12 6 1.4767 6.4545 6.9020 13 6 2.1479 7.8134 7.1112 14 6 1.7471 8.3704 8.4529 15 1 1.0807 7.8109 9.0926 16 6 2.2313 9.5942 8.8639 17 7 1.8819 10.0801 10.0350 18 14 3.3845 10.5616 7.7578 19 1 2.5910 11.4516 6.8727 20 1 4.2992 11.3814 8.5925 21 1 4.1804 9.6210 6.9289 22 6 2.4598 2.6492 3.8263 23 6 2.7382 2.0155 2.6296 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.9500 -0.8401 -0.0004 28 1 0.2399 3.2852 0.7523 29 1 -0.2617 4.4064 2.8864 30 1 0.0052 4.3770 5.2995 31 1 1.4022 3.5704 6.0517 32 1 0.3940 6.5754 6.9369 33 1 1.7913 5.7685 7.6884 34 1 3.2307 7.6931 7.0762 35 1 1.8329 8.4992 6.3248 36 1 2.2228 10.9409 10.3242 37 1 3.0853 2.4729 4.6889 38 1 3.5809 1.3440 2.5576 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596425352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:44 Heat of formation + Delta-G solvation = -85.024094 kcal Electronic energy + Delta-G solvation = -20536.283012 eV Core-core repulsion = 17209.518482 eV Total energy + Delta-G solvation = -3326.764530 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.40474 -38.39121 -37.00903 -35.88872 -35.77821 -34.18083 -33.30338 -32.11987 -28.69102 -27.46693 -26.82888 -23.94342 -23.40800 -22.46463 -20.60993 -19.16656 -19.10460 -18.59006 -17.40257 -17.23151 -16.61463 -16.46956 -16.40651 -15.79615 -15.63341 -15.43090 -15.02437 -14.80346 -14.64295 -14.59950 -13.90400 -13.84731 -13.77161 -13.62200 -13.37712 -13.27012 -13.18885 -13.06547 -12.53330 -12.27067 -12.16081 -12.06688 -11.87937 -11.78306 -11.61057 -10.94360 -10.82585 -10.54739 -10.15543 -10.08498 -8.71367 -8.35353 -6.40643 -0.71104 -0.43897 0.26168 0.80973 1.33592 1.35453 1.47238 1.62448 2.03001 2.31492 2.48602 2.76388 2.99890 3.27324 3.47393 3.65446 3.88462 4.08090 4.19916 4.24249 4.24555 4.27171 4.45239 4.47814 4.66631 4.68212 4.77024 4.89718 4.91683 5.01004 5.03110 5.05288 5.16710 5.28254 5.37668 5.51645 5.76163 6.10282 6.17036 6.65261 7.24063 8.80499 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.034066 B = 0.002262 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.744568 B =12377.224315 C =12660.898346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -1.109 6.109 3 S 2.719 3.281 4 O -0.988 6.988 5 O -0.985 6.985 6 C -0.680 4.680 7 C -0.027 4.027 8 C -0.129 4.129 9 C -0.020 4.020 10 C -0.048 4.048 11 S -0.296 6.296 12 C -0.048 4.048 13 C 0.007 3.993 14 C -0.530 4.530 15 H 0.042 0.958 16 C 0.012 3.988 17 N -0.943 5.943 18 Si 0.945 3.055 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.253 1.253 22 C -0.130 4.130 23 C -0.026 4.026 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.109 0.891 27 H 0.430 0.570 28 H 0.158 0.842 29 H 0.149 0.851 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.022 0.978 35 H 0.021 0.979 36 H 0.269 0.731 37 H 0.147 0.853 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.166 -25.049 -20.888 32.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.872 5.872 3 S 2.808 3.192 4 O -0.979 6.979 5 O -0.975 6.975 6 C -0.768 4.768 7 C -0.046 4.046 8 C -0.149 4.149 9 C -0.022 4.022 10 C -0.195 4.195 11 S -0.066 6.066 12 C -0.196 4.196 13 C -0.032 4.032 14 C -0.570 4.570 15 H 0.060 0.940 16 C -0.186 4.186 17 N -0.584 5.584 18 Si 0.768 3.232 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.177 1.177 22 C -0.151 4.151 23 C -0.045 4.045 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.128 0.872 27 H 0.266 0.734 28 H 0.175 0.825 29 H 0.166 0.834 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.165 0.835 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.082 -23.968 -22.161 32.788 hybrid contribution -0.472 0.154 1.865 1.930 sum -3.554 -23.815 -20.296 31.491 Atomic orbital electron populations 1.21785 0.77025 1.06206 1.02480 1.55003 1.17007 1.23523 1.91672 1.00987 0.72065 0.72878 0.73319 1.93556 1.32862 1.83921 1.87518 1.93552 1.79080 1.69733 1.55146 1.30893 1.07795 1.16617 1.21524 1.21142 0.93727 0.91410 0.98349 1.21435 1.01015 1.00340 0.92141 1.19715 0.94656 0.93745 0.94054 1.22426 1.03771 0.94816 0.98476 1.87148 1.67408 1.23844 1.28201 1.23200 1.02976 0.99962 0.93471 1.19208 0.96265 0.92229 0.95479 1.21265 1.29305 1.04261 1.02130 0.93993 1.25888 0.97784 0.98521 0.96412 1.70028 1.46547 1.20131 1.21645 0.85734 0.79375 0.78999 0.79062 1.19074 1.20535 1.17661 1.21427 0.97185 0.97284 0.99203 1.21102 0.96463 0.96090 0.90882 0.91337 0.91461 0.87227 0.73355 0.82484 0.83354 0.87309 0.87439 0.90369 0.90430 0.95967 0.96054 0.92222 0.83535 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 11.14 127.77 1.42 1.79 16 2 N -1.11 -9.52 6.19 -206.52 -1.28 -10.79 16 3 S 2.72 45.60 5.74 -56.49 -0.32 45.27 16 4 O -0.99 -22.27 17.28 -128.00 -2.21 -24.48 16 5 O -0.99 -22.27 17.00 -128.00 -2.18 -24.45 16 6 C -0.68 -11.87 5.95 22.27 0.13 -11.74 16 7 C -0.03 -0.46 9.52 22.27 0.21 -0.25 16 8 C -0.13 -2.37 9.70 22.27 0.22 -2.15 16 9 C -0.02 -0.41 5.14 -19.87 -0.10 -0.51 16 10 C -0.05 -1.04 6.07 71.24 0.43 -0.61 16 11 S -0.30 -9.44 21.72 -56.49 -1.23 -10.67 16 12 C -0.05 -1.82 5.88 71.98 0.42 -1.40 16 13 C 0.01 0.32 4.05 29.85 0.12 0.44 16 14 C -0.53 -30.05 9.66 25.60 0.25 -29.80 16 15 H 0.04 2.56 7.99 -2.91 -0.02 2.54 16 16 C 0.01 0.70 5.47 84.66 0.46 1.16 16 17 N -0.94 -58.28 13.96 21.45 0.30 -57.98 16 18 Si 0.94 44.48 27.47 68.60 1.88 46.37 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16 22 C -0.13 -2.47 9.70 22.27 0.22 -2.25 16 23 C -0.03 -0.46 9.52 22.27 0.21 -0.25 16 24 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 25 H 0.07 0.41 8.10 -2.38 -0.02 0.39 16 26 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 27 H 0.43 1.91 8.96 -96.74 -0.87 1.05 16 28 H 0.16 2.09 7.61 -2.91 -0.02 2.07 16 29 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 30 H 0.11 2.05 8.08 -2.40 -0.02 2.03 16 31 H 0.11 2.05 8.09 -2.39 -0.02 2.03 16 32 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 33 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.02 1.05 7.20 -2.39 -0.02 1.04 16 35 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 36 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.16 2.21 7.62 -2.91 -0.02 2.18 16 Total: -1.00 -76.07 350.12 -0.90 -76.96 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 0.14 Total: 5.33 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 4.00 Total: -45.56 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -0.98 Total: -68.77 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -4.39 Total: -48.93 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.37 kcal Atomic # 16 Polarization: 36.15 SS G_CDS: -1.55 Total: 34.60 kcal Total: -76.07 -0.90 -76.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596425352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.061 kcal (2) G-P(sol) polarization free energy of solvation -76.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds