Wall clock time and date at job start Tue Mar 31 2020 10:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46496 * 109.47307 * 2 1 4 4 C 1.37100 * 120.00029 * 263.55514 * 3 2 1 5 5 H 1.08001 * 119.99604 * 188.38779 * 4 3 2 6 6 C 1.38947 * 120.00167 * 8.39423 * 4 3 2 7 7 N 1.31413 * 120.00095 * 25.15793 * 6 4 3 8 8 Si 1.86805 * 120.00072 * 205.16409 * 6 4 3 9 9 H 1.48501 * 109.47257 * 84.98323 * 8 6 4 10 10 H 1.48499 * 109.46919 * 204.98723 * 8 6 4 11 11 H 1.48500 * 109.46867 * 324.98492 * 8 6 4 12 12 C 1.34774 * 120.00135 * 83.55913 * 3 2 1 13 13 O 1.21295 * 120.00625 * 180.02562 * 12 3 2 14 14 C 1.50704 * 119.99681 * 359.97438 * 12 3 2 15 15 C 1.53008 * 109.47099 * 180.02562 * 14 12 3 16 16 O 1.42901 * 109.47101 * 179.97438 * 15 14 12 17 17 C 1.35917 * 116.99923 * 179.97438 * 16 15 14 18 18 C 1.38759 * 120.02925 * 0.28313 * 17 16 15 19 19 C 1.38147 * 120.00096 * 180.24547 * 18 17 16 20 20 C 1.38334 * 120.06674 * 359.45096 * 19 18 17 21 21 Cl 1.73597 * 119.96952 * 180.27319 * 20 19 18 22 22 C 1.38573 * 120.06302 * 0.29369 * 20 19 18 23 23 F 1.35102 * 120.00313 * 179.97438 * 22 20 19 24 24 C 1.38366 * 119.99150 * 359.97438 * 22 20 19 25 25 H 1.08997 * 109.47587 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47354 * 300.00225 * 1 2 3 27 27 H 1.09005 * 109.46793 * 59.99705 * 1 2 3 28 28 H 1.09004 * 109.47047 * 240.00018 * 2 1 3 29 29 H 1.09001 * 109.47083 * 119.99901 * 2 1 3 30 30 H 0.96995 * 119.99801 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47027 * 60.00288 * 14 12 3 32 32 H 1.08999 * 109.47166 * 300.00042 * 14 12 3 33 33 H 1.09001 * 109.46621 * 60.00016 * 15 14 12 34 34 H 1.08999 * 109.46980 * 299.99953 * 15 14 12 35 35 H 1.07997 * 119.99802 * 359.97313 * 18 17 16 36 36 H 1.07997 * 119.96286 * 179.72469 * 19 18 17 37 37 H 1.08007 * 120.03148 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3725 1.9830 -1.1798 5 1 2.8580 2.9477 -1.1694 6 6 2.1067 1.3520 -2.3889 7 7 1.1282 0.4788 -2.4732 8 14 3.1404 1.7447 -3.8945 9 1 4.3646 0.9041 -3.8874 10 1 2.3537 1.4633 -5.1221 11 1 3.5246 3.1789 -3.8707 12 6 2.1195 2.0602 1.1598 13 8 2.5234 3.2039 1.1598 14 6 1.7297 1.3987 2.4566 15 6 1.9377 2.3798 3.6122 16 8 1.5675 1.7527 4.8418 17 6 1.6937 2.4933 5.9745 18 6 2.1586 3.7987 5.9025 19 6 2.2915 4.5491 7.0548 20 6 1.9506 4.0044 8.2798 21 17 2.1118 4.9522 9.7253 22 6 1.4809 2.7029 8.3543 23 9 1.1488 2.1719 9.5514 24 6 1.3522 1.9471 7.2024 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.9425 0.0386 -3.3173 31 1 2.3482 0.5150 2.6140 32 1 0.6808 1.1053 2.4139 33 1 1.3189 3.2632 3.4545 34 1 2.9865 2.6736 3.6551 35 1 2.4209 4.2265 4.9462 36 1 2.6576 5.5636 6.9985 37 1 0.9866 0.9324 7.2598 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596918539.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:57 Heat of formation + Delta-G solvation = -103.800268 kcal Electronic energy + Delta-G solvation = -23127.787536 eV Core-core repulsion = 19231.951928 eV Total energy + Delta-G solvation = -3895.835608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.11790 -41.35284 -40.43979 -38.70352 -37.35242 -37.02642 -33.98352 -32.95493 -31.84707 -31.16504 -30.46946 -27.30227 -25.36528 -24.21028 -23.87397 -22.93314 -20.57274 -19.78704 -18.77652 -18.13863 -17.87109 -17.51116 -17.43402 -17.15659 -16.83097 -16.29295 -15.99440 -15.71328 -15.44262 -15.02556 -14.55048 -14.37839 -14.19716 -14.15898 -13.83047 -13.60268 -13.44741 -13.11972 -12.99524 -12.82068 -12.64561 -12.37766 -12.32330 -12.11833 -12.00647 -11.85092 -11.68850 -11.48669 -10.81894 -10.36813 -10.12319 -9.71544 -9.34247 -8.33783 -5.83368 -0.14864 -0.02878 0.96336 1.37251 1.45082 1.54140 1.76684 2.00536 2.29844 2.31509 2.98456 3.06560 3.21531 3.53579 3.75475 3.83335 3.97250 3.97729 4.12021 4.16177 4.35552 4.52330 4.58528 4.70110 4.77808 4.80458 4.90972 4.91994 4.97953 5.08181 5.17611 5.37729 5.44791 5.51991 5.93102 6.08101 6.14834 6.52899 7.18548 7.50978 8.04502 8.64297 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.034082 B = 0.002356 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.344396 B =11879.955363 C =12560.320692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.117 3.883 3 N -0.448 5.448 4 C -0.351 4.351 5 H 0.074 0.926 6 C 0.006 3.994 7 N -0.866 5.866 8 Si 0.978 3.022 9 H -0.270 1.270 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.433 3.567 13 O -0.638 6.638 14 C -0.117 4.117 15 C 0.087 3.913 16 O -0.311 6.311 17 C 0.160 3.840 18 C -0.208 4.208 19 C -0.034 4.034 20 C -0.122 4.122 21 Cl -0.052 7.052 22 C 0.141 3.859 23 F -0.126 7.126 24 C -0.181 4.181 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.274 0.726 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.152 0.848 36 H 0.169 0.831 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.293 0.297 17.536 17.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.006 4.006 3 N -0.166 5.166 4 C -0.478 4.478 5 H 0.092 0.908 6 C -0.197 4.197 7 N -0.504 5.504 8 Si 0.803 3.197 9 H -0.196 1.196 10 H -0.200 1.200 11 H -0.204 1.204 12 C 0.222 3.778 13 O -0.528 6.528 14 C -0.157 4.157 15 C 0.012 3.988 16 O -0.224 6.224 17 C 0.113 3.887 18 C -0.227 4.227 19 C -0.052 4.052 20 C -0.149 4.149 21 Cl -0.023 7.023 22 C 0.120 3.880 23 F -0.105 7.105 24 C -0.200 4.200 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.169 0.831 36 H 0.186 0.814 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.277 0.537 17.490 17.501 hybrid contribution 0.332 0.356 -0.722 0.871 sum 0.055 0.894 16.769 16.793 Atomic orbital electron populations 1.21977 0.95550 1.01325 1.00945 1.21580 0.95412 0.82050 1.01560 1.44020 1.54878 1.12419 1.05240 1.19572 1.38595 1.05706 0.83941 0.90790 1.25825 0.96270 0.96859 1.00755 1.70186 1.24358 1.28198 1.27615 0.85183 0.78716 0.78456 0.77372 1.19559 1.19990 1.20420 1.20392 0.84753 0.86545 0.86069 1.90482 1.54200 1.20311 1.87789 1.21296 1.04938 0.99500 0.89938 1.22401 1.01031 0.95514 0.79845 1.85991 1.81312 1.41415 1.13732 1.18837 0.93267 0.90195 0.86393 1.21584 1.06330 0.93931 1.00812 1.20973 0.94802 1.01136 0.88326 1.20938 1.11208 0.92405 0.90379 1.98374 1.96620 1.71274 1.36030 1.16995 0.99340 0.90604 0.81029 1.91540 1.89863 1.86250 1.42823 1.20297 1.08587 1.02979 0.88151 0.91589 0.94398 0.92374 0.89999 0.91380 0.91620 0.87381 0.87720 0.91319 0.90988 0.83060 0.81383 0.81741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 9.64 71.98 0.69 -4.60 16 2 C 0.12 4.76 5.07 86.38 0.44 5.20 16 3 N -0.45 -21.70 2.64 -635.55 -1.68 -23.38 16 4 C -0.35 -19.01 9.43 84.04 0.79 -18.22 16 5 H 0.07 4.38 7.31 -2.91 -0.02 4.35 16 6 C 0.01 0.32 4.90 84.93 0.42 0.74 16 7 N -0.87 -42.15 8.65 21.66 0.19 -41.96 16 8 Si 0.98 40.46 29.62 68.60 2.03 42.49 16 9 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 10 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 12 C 0.43 19.67 7.58 87.66 0.66 20.34 16 13 O -0.64 -33.63 15.58 -3.08 -0.05 -33.68 16 14 C -0.12 -3.81 4.68 29.85 0.14 -3.67 16 15 C 0.09 2.54 4.03 71.98 0.29 2.83 16 16 O -0.31 -8.12 10.14 -92.62 -0.94 -9.06 16 17 C 0.16 3.73 6.68 22.50 0.15 3.88 16 18 C -0.21 -4.41 9.04 22.37 0.20 -4.21 16 19 C -0.03 -0.63 9.82 22.27 0.22 -0.41 16 20 C -0.12 -2.46 6.33 22.37 0.14 -2.32 16 21 Cl -0.05 -0.98 28.61 -2.72 -0.08 -1.06 16 22 C 0.14 3.00 7.27 22.38 0.16 3.17 16 23 F -0.13 -2.78 16.83 44.97 0.76 -2.02 16 24 C -0.18 -3.82 9.96 22.40 0.22 -3.59 16 25 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 26 H 0.04 1.31 6.45 -2.39 -0.02 1.29 16 27 H 0.06 2.62 6.38 -2.38 -0.02 2.61 16 28 H 0.08 3.68 5.83 -2.38 -0.01 3.67 16 29 H 0.07 2.29 6.71 -2.39 -0.02 2.27 16 30 H 0.27 12.52 8.31 -92.71 -0.77 11.75 16 31 H 0.11 3.08 7.42 -2.39 -0.02 3.07 16 32 H 0.10 3.16 6.41 -2.39 -0.02 3.15 16 33 H 0.07 2.07 7.61 -2.39 -0.02 2.06 16 34 H 0.07 2.12 7.63 -2.39 -0.02 2.11 16 35 H 0.15 3.18 6.30 -2.91 -0.02 3.16 16 36 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -60.11 328.41 5.88 -54.23 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.11 Total: 15.31 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 4.53 Total: -0.87 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: -1.49 Total: -65.34 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.99 Total: -42.74 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.76 Total: -2.02 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -60.11 5.88 -54.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596918539.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.574 kcal (2) G-P(sol) polarization free energy of solvation -60.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds