Wall clock time and date at job start Tue Mar 31 2020 10:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.47153 * 180.02562 * 15 13 12 17 17 O 1.42907 * 109.47185 * 179.97438 * 16 15 13 18 18 C 1.35915 * 116.99989 * 179.97438 * 17 16 15 19 19 C 1.38753 * 120.02752 * 180.02562 * 18 17 16 20 20 C 1.38144 * 120.00282 * 180.02562 * 19 18 17 21 21 C 1.38337 * 120.06928 * 0.02562 * 20 19 18 22 22 Cl 1.73598 * 119.97395 * 179.97438 * 21 20 19 23 23 C 1.38575 * 120.05776 * 0.02562 * 21 20 19 24 24 F 1.35100 * 120.00095 * 179.97438 * 23 21 20 25 25 C 1.38367 * 119.99524 * 359.68154 * 23 21 20 26 26 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 27 27 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 28 28 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 29 29 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 30 30 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 31 31 H 1.09007 * 109.46983 * 299.99861 * 15 13 12 32 32 H 1.08994 * 109.47412 * 59.99878 * 15 13 12 33 33 H 1.09001 * 109.46935 * 299.99228 * 16 15 13 34 34 H 1.08991 * 109.47484 * 60.00005 * 16 15 13 35 35 H 1.07997 * 119.99982 * 0.02562 * 19 18 17 36 36 H 1.07998 * 119.96983 * 179.97438 * 20 19 18 37 37 H 1.08001 * 120.03390 * 180.31627 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 6 2.7018 0.2550 -4.7585 17 8 3.1792 -0.4183 -5.9251 18 6 3.2854 0.3181 -7.0626 19 6 3.7417 -0.2727 -8.2322 20 6 3.8500 0.4764 -9.3878 21 6 3.5043 1.8159 -9.3805 22 17 3.6419 2.7551 -10.8340 23 6 3.0493 2.4089 -8.2136 24 9 2.7125 3.7173 -8.2077 25 6 2.9341 1.6595 -7.0562 26 1 -0.3634 -1.0201 -0.1234 27 1 -0.3633 0.4033 0.9453 28 1 -0.3633 0.6171 -0.8218 29 1 1.9020 -1.9133 3.4363 30 1 2.2490 -1.6317 -1.1527 31 1 3.6492 -1.1201 -3.3980 32 1 1.9777 -1.5505 -3.8327 33 1 1.7026 0.6471 -4.9483 34 1 3.3742 1.0770 -4.5132 35 1 4.0123 -1.3182 -8.2391 36 1 4.2056 0.0161 -10.2978 37 1 2.5747 2.1199 -6.1477 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596996479.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:56 Heat of formation + Delta-G solvation = -131.605301 kcal Electronic energy + Delta-G solvation = -22671.188264 eV Core-core repulsion = 18774.146939 eV Total energy + Delta-G solvation = -3897.041325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.15228 -41.39210 -40.61810 -38.74873 -37.35326 -36.85494 -34.50177 -33.34519 -31.97175 -31.39529 -30.34594 -26.93833 -25.99742 -23.91841 -23.50077 -22.32551 -21.23669 -20.02096 -19.59664 -18.20505 -17.86510 -17.57541 -17.52459 -17.10511 -16.90309 -16.82331 -15.93402 -15.59500 -15.42018 -15.16139 -14.74860 -14.60917 -14.42628 -14.30360 -14.09704 -13.69660 -13.42016 -13.30890 -13.24527 -12.97640 -12.47520 -12.44665 -12.40153 -12.03049 -11.96132 -11.76148 -11.60122 -11.22847 -10.90404 -10.46115 -10.17082 -9.93704 -9.33519 -8.81367 -6.42756 -0.13260 -0.05999 0.96387 1.46801 1.49472 1.67118 1.69677 1.72210 2.30478 2.42418 2.67525 2.91348 2.94860 3.44054 3.66037 3.75266 3.89930 3.92296 4.00991 4.32136 4.39336 4.50597 4.61995 4.67692 4.69006 4.72315 4.79005 4.80689 4.90451 5.02668 5.08916 5.38189 5.43242 5.61352 5.66412 6.01894 6.09407 6.52794 6.79702 7.26039 7.39019 8.56349 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.031528 B = 0.002203 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.887550 B =12707.430252 C =13343.355547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.244 3.756 3 H 0.022 0.978 4 C -0.621 4.621 5 H 0.044 0.956 6 C 0.002 3.998 7 N -0.919 5.919 8 Si 1.066 2.934 9 H -0.282 1.282 10 H -0.274 1.274 11 H -0.254 1.254 12 N -0.701 5.701 13 C 0.506 3.494 14 O -0.596 6.596 15 C -0.126 4.126 16 C 0.076 3.924 17 O -0.304 6.304 18 C 0.160 3.840 19 C -0.140 4.140 20 C -0.033 4.033 21 C -0.123 4.123 22 Cl -0.054 7.054 23 C 0.131 3.869 24 F -0.136 7.136 25 C -0.246 4.246 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.261 0.739 30 H 0.407 0.593 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.176 0.824 36 H 0.182 0.818 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.995 -0.237 -28.413 28.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.139 3.861 3 H 0.040 0.960 4 C -0.659 4.659 5 H 0.062 0.938 6 C -0.201 4.201 7 N -0.553 5.553 8 Si 0.889 3.111 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.179 1.179 12 N -0.349 5.349 13 C 0.293 3.707 14 O -0.478 6.478 15 C -0.166 4.166 16 C 0.000 4.000 17 O -0.216 6.216 18 C 0.113 3.887 19 C -0.159 4.159 20 C -0.051 4.051 21 C -0.150 4.150 22 Cl -0.025 7.025 23 C 0.111 3.889 24 F -0.114 7.114 25 C -0.265 4.265 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.243 0.757 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.193 0.807 36 H 0.199 0.801 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.561 1.679 -27.374 27.655 hybrid contribution 0.226 -1.030 -0.485 1.160 sum 3.787 0.650 -27.859 28.122 Atomic orbital electron populations 1.22306 0.97695 1.00726 1.00054 1.18714 0.91355 0.93081 0.82908 0.95977 1.22165 1.41033 1.10419 0.92286 0.93757 1.26712 0.92753 1.08685 0.91921 1.70965 1.45468 1.06082 1.32756 0.83738 0.78721 0.72067 0.76599 1.20765 1.19954 1.17884 1.46098 1.65064 1.14471 1.09299 1.20926 0.77411 0.86971 0.85392 1.90659 1.53214 1.17942 1.85974 1.21394 1.06250 0.99445 0.89487 1.22461 1.00129 0.94963 0.82411 1.86017 1.80614 1.38253 1.16756 1.18993 0.93514 0.88737 0.87471 1.20816 1.03535 1.02855 0.88681 1.21119 0.94770 0.89420 0.99816 1.21045 1.11284 0.94946 0.87753 1.98380 1.96807 1.72757 1.34580 1.17291 0.99488 0.78495 0.93607 1.91524 1.89803 1.32996 1.97103 1.21313 1.10909 0.95104 0.99213 0.92813 0.93208 0.94240 0.92936 0.75726 0.85688 0.85248 0.91132 0.91430 0.80693 0.80064 0.83550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.36 9.20 71.98 0.66 -5.70 16 2 C 0.24 11.15 2.16 44.24 0.10 11.25 16 3 H 0.02 1.11 6.15 -2.38 -0.01 1.10 16 4 C -0.62 -32.66 8.95 25.60 0.23 -32.44 16 5 H 0.04 2.44 7.96 -2.91 -0.02 2.42 16 6 C 0.00 0.09 5.19 84.66 0.44 0.53 16 7 N -0.92 -54.10 13.70 21.45 0.29 -53.81 16 8 Si 1.07 49.31 26.44 68.60 1.81 51.13 16 9 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.25 -10.88 6.14 99.48 0.61 -10.26 16 12 N -0.70 -25.46 5.07 -446.11 -2.26 -27.72 16 13 C 0.51 16.61 7.79 87.66 0.68 17.30 16 14 O -0.60 -24.28 15.64 -3.02 -0.05 -24.32 16 15 C -0.13 -2.64 6.07 29.85 0.18 -2.46 16 16 C 0.08 1.62 4.03 71.98 0.29 1.91 16 17 O -0.30 -5.74 10.14 -92.60 -0.94 -6.68 16 18 C 0.16 2.87 6.69 22.50 0.15 3.02 16 19 C -0.14 -1.75 9.98 22.37 0.22 -1.53 16 20 C -0.03 -0.39 9.82 22.27 0.22 -0.17 16 21 C -0.12 -2.11 6.33 22.37 0.14 -1.97 16 22 Cl -0.05 -0.91 28.61 -2.72 -0.08 -0.99 16 23 C 0.13 2.77 7.27 22.38 0.16 2.93 16 24 F -0.14 -3.27 16.83 44.97 0.76 -2.51 16 25 C -0.25 -5.04 9.01 22.40 0.20 -4.84 16 26 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.05 2.20 5.47 -2.39 -0.01 2.18 16 28 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.26 15.35 8.73 -92.71 -0.81 14.54 16 30 H 0.41 12.72 8.53 -92.71 -0.79 11.93 16 31 H 0.13 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.07 1.59 7.61 -2.39 -0.02 1.57 16 34 H 0.07 1.57 7.63 -2.39 -0.02 1.55 16 35 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 36 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 37 H 0.15 3.13 6.30 -2.91 -0.02 3.12 16 Total: -1.00 -66.16 336.35 3.42 -62.75 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.20 Total: 14.31 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 3.68 Total: -12.16 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -1.97 Total: -81.53 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.99 Total: -31.00 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.76 Total: -2.51 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 1.81 Total: 51.13 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -66.16 3.42 -62.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596996479.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.857 kcal (2) G-P(sol) polarization free energy of solvation -66.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds