Wall clock time and date at job start Tue Mar 31 2020 11:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00118 * 2 1 4 4 C 1.53006 * 109.46992 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47215 * 65.00273 * 4 3 2 6 6 C 1.37102 * 120.00450 * 84.92674 * 5 4 3 7 7 H 1.07994 * 119.99845 * 218.33871 * 6 5 4 8 8 C 1.38947 * 119.99670 * 38.33557 * 6 5 4 9 9 N 1.31407 * 120.00133 * 20.89704 * 8 6 5 10 10 Si 1.86801 * 119.99751 * 200.89538 * 8 6 5 11 11 H 1.48498 * 109.47104 * 60.00496 * 10 8 6 12 12 H 1.48499 * 109.47075 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47439 * 300.00116 * 10 8 6 14 14 C 1.34781 * 119.99572 * 265.20060 * 5 4 3 15 15 O 1.21291 * 120.00398 * 359.72412 * 14 5 4 16 16 C 1.50701 * 119.99803 * 179.72614 * 14 5 4 17 17 C 1.50696 * 109.47381 * 179.97438 * 16 14 5 18 18 C 1.38260 * 119.96887 * 269.73056 * 17 16 14 19 19 C 1.38205 * 120.04970 * 179.72258 * 18 17 16 20 20 C 1.38448 * 119.98159 * 0.52343 * 19 18 17 21 21 F 1.35108 * 120.02486 * 179.72691 * 20 19 18 22 22 C 1.38551 * 119.94221 * 359.74656 * 20 19 18 23 23 Cl 1.73599 * 120.02386 * 180.02562 * 22 20 19 24 24 C 1.38215 * 119.96776 * 89.99583 * 17 16 14 25 25 H 1.09004 * 109.47022 * 59.99802 * 1 2 3 26 26 H 1.09001 * 109.47435 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47324 * 299.99878 * 1 2 3 28 28 H 1.09002 * 109.47499 * 59.99880 * 3 2 1 29 29 H 1.09000 * 109.47380 * 299.99623 * 3 2 1 30 30 H 1.09001 * 109.46826 * 304.99883 * 4 3 2 31 31 H 1.09001 * 109.47016 * 185.00127 * 4 3 2 32 32 H 0.97000 * 119.99812 * 179.97438 * 9 8 6 33 33 H 1.09006 * 109.47026 * 300.00117 * 16 14 5 34 34 H 1.08996 * 109.47737 * 59.99765 * 16 14 5 35 35 H 1.07995 * 119.97543 * 359.97438 * 18 17 16 36 36 H 1.07993 * 120.00528 * 180.24548 * 19 18 17 37 37 H 1.07996 * 119.99714 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.1682 1.3349 -2.3682 7 1 3.8864 0.9570 -3.3398 8 6 4.7248 2.6026 -2.2504 9 7 5.4332 2.9130 -1.1881 10 14 4.4661 3.8655 -3.6023 11 1 3.0132 4.1254 -3.7654 12 1 5.1576 5.1284 -3.2389 13 1 5.0224 3.3465 -4.8776 14 6 4.1890 -0.7660 -1.3052 15 8 4.0196 -1.4482 -0.3168 16 6 4.6369 -1.4054 -2.5943 17 6 4.8015 -2.8891 -2.3885 18 6 6.0220 -3.3995 -1.9866 19 6 6.1732 -4.7593 -1.7918 20 6 5.1048 -5.6125 -2.0097 21 9 5.2532 -6.9426 -1.8248 22 6 3.8835 -5.1011 -2.4178 23 17 2.5423 -6.1688 -2.6909 24 6 3.7337 -3.7391 -2.6069 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8507 0.5684 0.8427 31 1 3.9785 2.1764 0.0902 32 1 5.8221 3.7979 -1.1061 33 1 3.8899 -1.2261 -3.3676 34 1 5.5893 -0.9739 -2.9022 35 1 6.8567 -2.7345 -1.8208 36 1 7.1258 -5.1567 -1.4741 37 1 2.7821 -3.3397 -2.9253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600004382.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:41 Heat of formation + Delta-G solvation = -104.180727 kcal Electronic energy + Delta-G solvation = -24075.779107 eV Core-core repulsion = 20179.927001 eV Total energy + Delta-G solvation = -3895.852106 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.79487 -39.39256 -38.25378 -36.92692 -36.40095 -34.73745 -32.10768 -31.64395 -30.76101 -29.37219 -26.80119 -25.69968 -24.83028 -22.98707 -22.31815 -21.09411 -19.12346 -17.66137 -16.97666 -16.49098 -16.13822 -15.68367 -15.56429 -15.50003 -15.31125 -14.49737 -14.45674 -14.13914 -13.98057 -13.72308 -13.49769 -13.08854 -12.90981 -12.50902 -12.07802 -11.78049 -11.54921 -11.53284 -11.32881 -11.18947 -11.14118 -11.05726 -10.77251 -10.75686 -10.52877 -10.42707 -10.20543 -9.22240 -9.02020 -8.80671 -8.54907 -8.17908 -7.52025 -6.44607 -4.15834 1.18270 1.29994 2.12633 3.06162 3.15500 3.16906 3.63218 3.93181 4.06024 4.24838 4.50963 4.71970 4.79237 4.96275 5.09420 5.30708 5.40269 5.63958 5.65895 5.71166 5.95199 5.99114 6.01768 6.04519 6.10199 6.13205 6.24053 6.27865 6.37408 6.42485 6.76651 6.83246 6.93628 7.15682 7.38230 7.85086 7.91655 8.31839 9.03055 9.49479 9.96563 10.56661 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014940 B = 0.004081 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.727736 B = 6859.915603 C = 7761.946584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.050 3.950 4 C 0.115 3.885 5 N -0.439 5.439 6 C -0.340 4.340 7 H 0.087 0.913 8 C 0.045 3.955 9 N -0.860 5.860 10 Si 0.911 3.089 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.271 1.271 14 C 0.484 3.516 15 O -0.584 6.584 16 C -0.088 4.088 17 C -0.037 4.037 18 C -0.074 4.074 19 C -0.141 4.141 20 C 0.092 3.908 21 F -0.135 7.135 22 C -0.069 4.069 23 Cl -0.064 7.064 24 C -0.071 4.071 25 H 0.032 0.968 26 H 0.076 0.924 27 H 0.030 0.970 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.271 0.729 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.470 -7.247 -3.126 8.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.027 4.027 4 C -0.009 4.009 5 N -0.158 5.158 6 C -0.468 4.468 7 H 0.105 0.895 8 C -0.161 4.161 9 N -0.496 5.496 10 Si 0.738 3.262 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.196 1.196 14 C 0.272 3.728 15 O -0.468 6.468 16 C -0.128 4.128 17 C -0.038 4.038 18 C -0.092 4.092 19 C -0.160 4.160 20 C 0.072 3.928 21 F -0.114 7.114 22 C -0.097 4.097 23 Cl -0.035 7.035 24 C -0.089 4.089 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.134 0.866 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.156 0.844 36 H 0.158 0.842 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.442 -7.707 -2.559 8.480 hybrid contribution -0.533 0.826 -0.660 1.184 sum -2.975 -6.882 -3.220 8.159 Atomic orbital electron populations 1.22623 0.83335 1.01649 0.98887 1.88120 1.17548 1.28179 1.95094 1.23088 0.96540 0.84259 0.98840 1.21475 0.89451 1.01888 0.88090 1.43209 1.57842 1.04704 1.10042 1.19350 1.41459 0.98512 0.87511 0.89491 1.25355 0.93927 0.99269 0.97581 1.69881 1.28687 1.21709 1.29368 0.86255 0.78764 0.79980 0.81243 1.19916 1.20917 1.19642 1.20049 0.80472 0.83432 0.88839 1.90578 1.56111 1.62892 1.37229 1.20508 1.04409 0.89079 0.98774 1.19669 0.92419 0.95708 0.96028 1.21025 0.97907 0.93997 0.96294 1.21024 0.98100 0.93517 1.03361 1.17330 0.93620 0.77924 1.03967 1.91494 1.96196 1.30639 1.93062 1.20866 0.88475 0.92256 1.08096 1.98355 1.45109 1.65042 1.94975 1.20816 0.99733 0.89670 0.98724 0.94920 0.90581 0.95134 0.94450 0.93336 0.91612 0.86636 0.91904 0.89021 0.88010 0.84431 0.84187 0.84328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.37 -7.78 10.12 -35.23 -0.36 -8.14 16 3 C 0.05 1.02 6.26 37.16 0.23 1.25 16 4 C 0.11 2.64 5.50 -4.04 -0.02 2.62 16 5 N -0.44 -10.42 2.48 -114.81 -0.28 -10.70 16 6 C -0.34 -7.98 8.56 -14.93 -0.13 -8.11 16 7 H 0.09 1.94 7.10 -52.49 -0.37 1.57 16 8 C 0.04 1.05 5.01 -17.47 -0.09 0.96 16 9 N -0.86 -21.25 11.42 55.50 0.63 -20.62 16 10 Si 0.91 18.18 29.60 -169.99 -5.03 13.15 16 11 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 12 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 13 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 14 C 0.48 11.15 7.36 -10.98 -0.08 11.07 16 15 O -0.58 -14.97 15.28 5.55 0.08 -14.88 16 16 C -0.09 -1.62 4.53 -29.04 -0.13 -1.75 16 17 C -0.04 -0.63 4.37 -104.62 -0.46 -1.09 16 18 C -0.07 -1.13 9.70 -39.59 -0.38 -1.51 16 19 C -0.14 -1.99 10.03 -39.52 -0.40 -2.38 16 20 C 0.09 1.40 7.28 -39.39 -0.29 1.11 16 21 F -0.14 -2.04 16.84 2.25 0.04 -2.00 16 22 C -0.07 -1.09 6.33 -39.43 -0.25 -1.34 16 23 Cl -0.06 -0.91 28.62 -51.86 -1.48 -2.40 16 24 C -0.07 -1.15 9.48 -39.56 -0.38 -1.52 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.60 7.28 -51.93 -0.38 1.22 16 31 H 0.12 2.76 5.53 -51.93 -0.29 2.47 16 32 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 33 H 0.09 1.56 7.61 -51.93 -0.40 1.16 16 34 H 0.10 1.80 8.04 -51.93 -0.42 1.38 16 35 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 339.85 15.07 5.12 5.12 Total: -1.00 -28.26 339.85 -6.90 -35.16 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.37 Total: 4.38 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.25 Total: 0.93 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.35 Total: -31.32 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.27 Total: -23.02 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.48 Total: -2.40 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.26 -6.90 -35.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600004382.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.017 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds