Wall clock time and date at job start Tue Mar 31 2020 11:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00118 * 2 1 4 4 C 1.53006 * 109.46992 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47215 * 65.00273 * 4 3 2 6 6 C 1.37102 * 120.00450 * 84.92674 * 5 4 3 7 7 H 1.07994 * 119.99845 * 218.33871 * 6 5 4 8 8 C 1.38947 * 119.99670 * 38.33557 * 6 5 4 9 9 N 1.31407 * 120.00133 * 20.89704 * 8 6 5 10 10 Si 1.86801 * 119.99751 * 200.89538 * 8 6 5 11 11 H 1.48498 * 109.47104 * 60.00496 * 10 8 6 12 12 H 1.48499 * 109.47075 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47439 * 300.00116 * 10 8 6 14 14 C 1.34781 * 119.99572 * 265.20060 * 5 4 3 15 15 O 1.21291 * 120.00398 * 359.72412 * 14 5 4 16 16 C 1.50701 * 119.99803 * 179.72614 * 14 5 4 17 17 C 1.50696 * 109.47381 * 179.97438 * 16 14 5 18 18 C 1.38260 * 119.96887 * 269.73056 * 17 16 14 19 19 C 1.38205 * 120.04970 * 179.72258 * 18 17 16 20 20 C 1.38448 * 119.98159 * 0.52343 * 19 18 17 21 21 F 1.35108 * 120.02486 * 179.72691 * 20 19 18 22 22 C 1.38551 * 119.94221 * 359.74656 * 20 19 18 23 23 Cl 1.73599 * 120.02386 * 180.02562 * 22 20 19 24 24 C 1.38215 * 119.96776 * 89.99583 * 17 16 14 25 25 H 1.09004 * 109.47022 * 59.99802 * 1 2 3 26 26 H 1.09001 * 109.47435 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47324 * 299.99878 * 1 2 3 28 28 H 1.09002 * 109.47499 * 59.99880 * 3 2 1 29 29 H 1.09000 * 109.47380 * 299.99623 * 3 2 1 30 30 H 1.09001 * 109.46826 * 304.99883 * 4 3 2 31 31 H 1.09001 * 109.47016 * 185.00127 * 4 3 2 32 32 H 0.97000 * 119.99812 * 179.97438 * 9 8 6 33 33 H 1.09006 * 109.47026 * 300.00117 * 16 14 5 34 34 H 1.08996 * 109.47737 * 59.99765 * 16 14 5 35 35 H 1.07995 * 119.97543 * 359.97438 * 18 17 16 36 36 H 1.07993 * 120.00528 * 180.24548 * 19 18 17 37 37 H 1.07996 * 119.99714 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.1682 1.3349 -2.3682 7 1 3.8864 0.9570 -3.3398 8 6 4.7248 2.6026 -2.2504 9 7 5.4332 2.9130 -1.1881 10 14 4.4661 3.8655 -3.6023 11 1 3.0132 4.1254 -3.7654 12 1 5.1576 5.1284 -3.2389 13 1 5.0224 3.3465 -4.8776 14 6 4.1890 -0.7660 -1.3052 15 8 4.0196 -1.4482 -0.3168 16 6 4.6369 -1.4054 -2.5943 17 6 4.8015 -2.8891 -2.3885 18 6 6.0220 -3.3995 -1.9866 19 6 6.1732 -4.7593 -1.7918 20 6 5.1048 -5.6125 -2.0097 21 9 5.2532 -6.9426 -1.8248 22 6 3.8835 -5.1011 -2.4178 23 17 2.5423 -6.1688 -2.6909 24 6 3.7337 -3.7391 -2.6069 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8507 0.5684 0.8427 31 1 3.9785 2.1764 0.0902 32 1 5.8221 3.7979 -1.1061 33 1 3.8899 -1.2261 -3.3676 34 1 5.5893 -0.9739 -2.9022 35 1 6.8567 -2.7345 -1.8208 36 1 7.1258 -5.1567 -1.4741 37 1 2.7821 -3.3397 -2.9253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600004382.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:41 Heat of formation + Delta-G solvation = -118.628190 kcal Electronic energy + Delta-G solvation = -24076.405596 eV Core-core repulsion = 20179.927001 eV Total energy + Delta-G solvation = -3896.478595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.98337 -40.85027 -39.76713 -38.46981 -37.59255 -36.52624 -33.49099 -33.45705 -31.95233 -30.97288 -28.19360 -27.14821 -26.55828 -24.18003 -23.82720 -22.52476 -20.88965 -18.94253 -18.56994 -17.84813 -17.71187 -17.21327 -16.92812 -16.81618 -16.76806 -16.10258 -16.04148 -15.67336 -15.32440 -15.00582 -14.79566 -14.48917 -14.37427 -13.88418 -13.49481 -13.38965 -13.21130 -12.88758 -12.78502 -12.64256 -12.54163 -12.42183 -12.24105 -12.18332 -12.05230 -11.93721 -11.84841 -10.99166 -10.53696 -10.25876 -9.96352 -9.53868 -9.34827 -8.23343 -6.00405 -0.04332 0.10769 0.94168 1.48753 1.54827 1.61684 2.18825 2.34274 2.43332 3.02366 3.05386 3.06568 3.28290 3.63670 3.76155 4.12179 4.19695 4.29640 4.38527 4.40282 4.49109 4.56919 4.59959 4.70132 4.76905 4.79686 4.81504 4.88127 4.95811 5.09146 5.10812 5.31872 5.50164 5.56479 5.71712 6.12341 6.39058 6.52279 7.22213 7.70263 8.18108 8.78724 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014940 B = 0.004081 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.727736 B = 6859.915603 C = 7761.946584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.061 3.939 4 C 0.114 3.886 5 N -0.449 5.449 6 C -0.351 4.351 7 H 0.098 0.902 8 C 0.009 3.991 9 N -0.892 5.892 10 Si 0.976 3.024 11 H -0.271 1.271 12 H -0.288 1.288 13 H -0.263 1.263 14 C 0.472 3.528 15 O -0.617 6.617 16 C -0.076 4.076 17 C -0.054 4.054 18 C -0.079 4.079 19 C -0.132 4.132 20 C 0.086 3.914 21 F -0.134 7.134 22 C -0.078 4.078 23 Cl -0.055 7.055 24 C -0.078 4.078 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.104 0.896 32 H 0.272 0.728 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.150 0.850 36 H 0.171 0.829 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 -7.369 -4.185 8.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.017 4.017 4 C -0.010 4.010 5 N -0.168 5.168 6 C -0.479 4.479 7 H 0.115 0.885 8 C -0.195 4.195 9 N -0.529 5.529 10 Si 0.800 3.200 11 H -0.196 1.196 12 H -0.213 1.213 13 H -0.187 1.187 14 C 0.261 3.739 15 O -0.503 6.503 16 C -0.116 4.116 17 C -0.055 4.055 18 C -0.097 4.097 19 C -0.150 4.150 20 C 0.066 3.934 21 F -0.113 7.113 22 C -0.106 4.106 23 Cl -0.026 7.026 24 C -0.097 4.097 25 H 0.062 0.938 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.167 0.833 36 H 0.189 0.811 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.784 -7.834 -3.632 9.073 hybrid contribution -0.452 0.799 -0.272 0.957 sum -3.236 -7.035 -3.904 8.672 Atomic orbital electron populations 1.22846 0.80687 1.03001 1.00403 1.88062 1.20518 1.28418 1.95376 1.22891 0.94522 0.84447 0.99800 1.21390 0.91669 1.00536 0.87447 1.43453 1.57856 1.05240 1.10229 1.19663 1.41537 0.98854 0.87815 0.88454 1.26095 0.93294 1.00597 0.99476 1.69985 1.29627 1.22100 1.31209 0.85254 0.78548 0.77328 0.78874 1.19581 1.21313 1.18715 1.20795 0.79802 0.83183 0.90073 1.90541 1.57470 1.63483 1.38834 1.20391 1.04736 0.89949 0.96519 1.19647 0.93486 0.94858 0.97518 1.21228 0.97761 0.94847 0.95871 1.21311 0.99006 0.92791 1.01932 1.17508 0.93851 0.78158 1.03919 1.91497 1.96183 1.30539 1.93034 1.20957 0.89099 0.92306 1.08191 1.98353 1.44699 1.64610 1.94919 1.20861 0.99778 0.89984 0.99028 0.93807 0.89403 0.93100 0.92083 0.93556 0.94008 0.87830 0.91876 0.87840 0.87438 0.83253 0.81144 0.84045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.05 16 2 O -0.40 -16.81 10.12 -148.98 -1.51 -18.32 16 3 C 0.06 2.44 6.26 71.98 0.45 2.89 16 4 C 0.11 5.35 5.50 86.38 0.48 5.82 16 5 N -0.45 -21.52 2.48 -635.54 -1.58 -23.09 16 6 C -0.35 -16.33 8.56 84.04 0.72 -15.61 16 7 H 0.10 4.23 7.10 -2.91 -0.02 4.21 16 8 C 0.01 0.40 5.01 84.93 0.43 0.83 16 9 N -0.89 -44.33 11.42 21.66 0.25 -44.09 16 10 Si 0.98 36.50 29.60 68.60 2.03 38.53 16 11 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 12 H -0.29 -10.85 7.11 99.48 0.71 -10.15 16 13 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 14 C 0.47 21.93 7.36 87.66 0.64 22.57 16 15 O -0.62 -32.19 15.28 -3.06 -0.05 -32.24 16 16 C -0.08 -2.78 4.53 29.10 0.13 -2.65 16 17 C -0.05 -1.79 4.37 -19.87 -0.09 -1.88 16 18 C -0.08 -2.31 9.70 22.27 0.22 -2.10 16 19 C -0.13 -3.45 10.03 22.31 0.22 -3.23 16 20 C 0.09 2.48 7.28 22.39 0.16 2.65 16 21 F -0.13 -3.80 16.84 44.97 0.76 -3.05 16 22 C -0.08 -2.37 6.33 22.36 0.14 -2.23 16 23 Cl -0.05 -1.51 28.62 -2.72 -0.08 -1.59 16 24 C -0.08 -2.47 9.48 22.28 0.21 -2.26 16 25 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 28 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.04 2.11 7.28 -2.39 -0.02 2.09 16 31 H 0.10 5.09 5.53 -2.39 -0.01 5.07 16 32 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16 33 H 0.10 3.45 7.61 -2.38 -0.02 3.43 16 34 H 0.11 3.73 8.04 -2.39 -0.02 3.71 16 35 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 36 H 0.17 3.34 8.06 -2.91 -0.02 3.31 16 37 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -60.13 339.85 5.88 -54.24 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 1.09 Total: 22.73 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 4.96 Total: 6.87 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: -1.33 Total: -67.18 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -1.56 Total: -50.56 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.76 Total: -3.05 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -60.13 5.88 -54.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600004382.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.384 kcal (2) G-P(sol) polarization free energy of solvation -60.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds