Wall clock time and date at job start Tue Mar 31 2020 10:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81404 * 102.99633 * 2 1 4 4 C 1.53001 * 109.46650 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47372 * 304.99762 * 4 3 2 6 6 C 1.53001 * 109.47129 * 185.00158 * 4 3 2 7 7 N 1.46499 * 109.47316 * 65.00035 * 4 3 2 8 8 S 1.65606 * 120.00069 * 214.95947 * 7 4 3 9 9 O 1.42097 * 106.40254 * 312.56140 * 8 7 4 10 10 O 1.42098 * 106.40179 * 179.64103 * 8 7 4 11 11 C 1.76199 * 107.21715 * 66.09807 * 8 7 4 12 12 C 1.37635 * 120.13100 * 245.22608 * 11 8 7 13 13 C 1.38615 * 120.24983 * 180.32215 * 12 11 8 14 14 C 1.38657 * 120.49765 * 359.66892 * 13 12 11 15 15 C 1.37598 * 120.25354 * 0.02562 * 14 13 12 16 16 C 1.40699 * 120.12571 * 64.91995 * 11 8 7 17 17 C 1.41397 * 120.24667 * 359.97438 * 16 11 8 18 18 H 1.07997 * 119.99913 * 335.28354 * 17 16 11 19 19 C 1.39941 * 120.00370 * 155.28179 * 17 16 11 20 20 N 1.30830 * 119.99731 * 331.82181 * 19 17 16 21 21 Si 1.86795 * 120.00295 * 151.82000 * 19 17 16 22 22 H 1.48495 * 109.47441 * 180.02562 * 21 19 17 23 23 H 1.48497 * 109.47329 * 300.00407 * 21 19 17 24 24 H 1.48508 * 109.46978 * 60.00156 * 21 19 17 25 25 H 1.08997 * 109.46801 * 60.00130 * 1 2 3 26 26 H 1.09003 * 109.46999 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47079 * 299.99725 * 1 2 3 28 28 H 1.08993 * 109.47074 * 60.00385 * 3 2 1 29 29 H 1.08994 * 109.47397 * 299.99522 * 3 2 1 30 30 H 1.08997 * 109.47296 * 179.97438 * 6 4 3 31 31 H 1.09004 * 109.47070 * 300.00323 * 6 4 3 32 32 H 1.08997 * 109.46926 * 59.99581 * 6 4 3 33 33 H 0.96996 * 120.00089 * 34.96093 * 7 4 3 34 34 H 1.07998 * 119.87331 * 0.02562 * 12 11 8 35 35 H 1.07994 * 119.75269 * 179.69223 * 13 12 11 36 36 H 1.08004 * 119.87542 * 180.02562 * 14 13 12 37 37 H 1.07994 * 120.12887 * 180.02562 * 15 14 13 38 38 H 0.96997 * 120.00445 * 355.39595 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9400 -0.0006 5 1 4.1702 1.3952 0.8410 6 6 4.0872 3.4253 0.1251 7 7 4.2928 1.4151 -1.2527 8 16 5.7706 0.6678 -1.2586 9 8 6.6493 1.5106 -0.5260 10 8 6.0140 0.2705 -2.6010 11 6 5.6084 -0.8159 -0.3221 12 6 6.2998 -0.9669 0.8584 13 6 6.1792 -2.1357 1.5937 14 6 5.3573 -3.1622 1.1538 15 6 4.6519 -3.0306 -0.0202 16 6 4.7666 -1.8483 -0.7749 17 6 4.0459 -1.7017 -1.9826 18 1 3.8078 -0.7155 -2.3530 19 6 3.6412 -2.8343 -2.6979 20 7 4.3329 -3.9417 -2.6155 21 14 2.1135 -2.7650 -3.7705 22 1 1.9018 -4.0852 -4.4165 23 1 0.9346 -2.4302 -2.9318 24 1 2.2890 -1.7245 -4.8155 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.8031 2.2371 0.8900 29 1 1.8032 2.2372 -0.8900 30 1 5.1702 3.5481 0.1251 31 1 3.6593 3.9702 -0.7164 32 1 3.6776 3.8158 1.0567 33 1 3.7917 1.5054 -2.0783 34 1 6.9424 -0.1736 1.2106 35 1 6.7293 -2.2476 2.5163 36 1 5.2705 -4.0684 1.7349 37 1 4.0120 -3.8312 -0.3607 38 1 5.1622 -3.9593 -2.1126 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601350035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:03 Heat of formation + Delta-G solvation = -70.876028 kcal Electronic energy + Delta-G solvation = -23349.768569 eV Core-core repulsion = 20023.617545 eV Total energy + Delta-G solvation = -3326.151023 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -37.69533 -36.69812 -36.06296 -34.81863 -34.01406 -30.32946 -30.00986 -29.33575 -28.73909 -27.12398 -25.26156 -21.71105 -21.38838 -21.02841 -18.79530 -18.20201 -16.94062 -16.32685 -15.94078 -15.47051 -14.79105 -14.57798 -14.11787 -14.00492 -13.76222 -13.62568 -13.39604 -13.23947 -12.98063 -12.62502 -12.42096 -12.32106 -12.09352 -11.54140 -11.33022 -11.24388 -11.12976 -11.07542 -11.05168 -10.95686 -10.70019 -10.47367 -10.43470 -9.76421 -9.55054 -9.41741 -9.11814 -8.81116 -8.09049 -7.71048 -7.43479 -7.17047 -4.68059 1.56360 1.98739 2.37013 2.77437 2.93673 3.10275 3.24165 3.30931 3.90929 3.91933 4.41139 4.70426 4.84877 5.07556 5.25821 5.28178 5.32469 5.40173 5.48722 5.57954 5.67147 5.72187 5.86193 5.96956 6.02605 6.16920 6.34650 6.39113 6.45956 6.76071 7.03682 7.22877 7.41581 7.47129 7.56903 7.68431 7.77497 7.92642 8.11132 8.48397 8.69527 9.82681 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.008687 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.198595 B = 3222.614903 C = 4079.947537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.190 6.190 3 C -0.107 4.107 4 C 0.177 3.823 5 H 0.092 0.908 6 C -0.165 4.165 7 N -1.113 6.113 8 S 2.698 3.302 9 O -1.000 7.000 10 O -0.968 6.968 11 C -0.785 4.785 12 C 0.014 3.986 13 C -0.270 4.270 14 C -0.057 4.057 15 C -0.208 4.208 16 C 0.174 3.826 17 C -0.469 4.469 18 H 0.089 0.911 19 C 0.046 3.954 20 N -0.769 5.769 21 Si 1.057 2.943 22 H -0.274 1.274 23 H -0.268 1.268 24 H -0.270 1.270 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.412 0.588 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.930 8.286 3.627 12.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.036 5.964 3 C -0.257 4.257 4 C 0.068 3.932 5 H 0.110 0.890 6 C -0.226 4.226 7 N -0.869 5.869 8 S 2.796 3.204 9 O -0.990 6.990 10 O -0.958 6.958 11 C -0.881 4.881 12 C -0.006 4.006 13 C -0.290 4.290 14 C -0.076 4.076 15 C -0.227 4.227 16 C 0.168 3.832 17 C -0.496 4.496 18 H 0.107 0.893 19 C -0.180 4.180 20 N -0.390 5.390 21 Si 0.880 3.120 22 H -0.198 1.198 23 H -0.193 1.193 24 H -0.195 1.195 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.245 0.755 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.347 6.789 2.365 10.279 hybrid contribution -0.527 1.302 1.282 1.902 sum -7.874 8.091 3.647 11.865 Atomic orbital electron populations 1.23442 0.97740 1.06126 1.03802 1.88429 1.03158 1.07046 1.97756 1.23842 0.99518 0.97610 1.04744 1.20227 0.90938 0.94864 0.87201 0.89028 1.22322 1.03538 0.95018 1.01722 1.55790 1.41000 1.75200 1.14891 1.01118 0.71777 0.73718 0.73750 1.93439 1.63217 1.67645 1.74723 1.93540 1.83370 1.83306 1.35598 1.29640 1.20365 1.21820 1.16256 1.20258 0.92999 0.95830 0.91498 1.20348 1.09304 0.96764 1.02601 1.20762 0.95003 0.96454 0.95341 1.21257 1.04654 0.99898 0.96937 1.16808 0.85836 0.89575 0.90947 1.20816 1.27453 0.97271 1.04048 0.89279 1.27071 1.02182 0.91167 0.97583 1.70462 1.12209 1.28861 1.27506 0.83752 0.74411 0.77555 0.76306 1.19842 1.19269 1.19457 0.91089 0.88414 0.91418 0.89718 0.89951 0.90565 0.92253 0.91879 0.75490 0.87702 0.88934 0.89042 0.87477 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 10.76 101.05 1.09 -0.63 16 2 S -0.19 -3.07 21.76 -107.50 -2.34 -5.41 16 3 C -0.11 -1.36 5.52 37.16 0.21 -1.15 16 4 C 0.18 2.59 2.77 -67.93 -0.19 2.40 16 5 H 0.09 1.48 7.92 -51.92 -0.41 1.07 16 6 C -0.17 -2.02 9.52 37.16 0.35 -1.67 16 7 N -1.11 -19.10 4.36 -4.89 -0.02 -19.12 16 8 S 2.70 58.70 4.87 -107.50 -0.52 58.17 16 9 O -1.00 -22.47 16.21 -57.17 -0.93 -23.39 16 10 O -0.97 -24.16 16.50 -57.17 -0.94 -25.10 16 11 C -0.78 -18.49 5.88 -38.87 -0.23 -18.72 16 12 C 0.01 0.32 9.53 -39.66 -0.38 -0.06 16 13 C -0.27 -5.92 10.05 -39.29 -0.39 -6.31 16 14 C -0.06 -1.27 10.02 -39.66 -0.40 -1.66 16 15 C -0.21 -5.02 8.01 -38.87 -0.31 -5.33 16 16 C 0.17 4.26 5.30 -106.82 -0.57 3.70 16 17 C -0.47 -11.39 7.32 -37.74 -0.28 -11.67 16 18 H 0.09 2.07 5.65 -52.49 -0.30 1.77 16 19 C 0.05 1.10 4.87 -17.34 -0.08 1.01 16 20 N -0.77 -19.45 12.35 55.55 0.69 -18.76 16 21 Si 1.06 20.61 30.01 -169.99 -5.10 15.51 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 24 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.10 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.07 7.64 -51.93 -0.40 0.67 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.41 6.38 8.53 -34.47 -0.29 6.09 16 34 H 0.10 2.21 7.32 -52.49 -0.38 1.83 16 35 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 37 H 0.11 2.63 6.53 -52.49 -0.34 2.29 16 38 H 0.30 7.94 6.82 -40.82 -0.28 7.66 16 LS Contribution 340.44 15.07 5.13 5.13 Total: -1.00 -29.99 340.44 -10.22 -40.22 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.00 Total: 12.85 kcal Atomic # 6 Polarization: -38.92 SS G_CDS: -1.18 Total: -40.09 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.66 Total: -37.88 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -1.87 Total: -48.49 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.10 Total: 15.51 kcal Atomic # 16 Polarization: 55.63 SS G_CDS: -2.86 Total: 52.76 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.99 -10.22 -40.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601350035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.660 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds