Wall clock time and date at job start Tue Mar 31 2020 10:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81404 * 102.99633 * 2 1 4 4 C 1.53001 * 109.46650 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47372 * 304.99762 * 4 3 2 6 6 C 1.53001 * 109.47129 * 185.00158 * 4 3 2 7 7 N 1.46499 * 109.47316 * 65.00035 * 4 3 2 8 8 S 1.65606 * 120.00069 * 214.95947 * 7 4 3 9 9 O 1.42097 * 106.40254 * 312.56140 * 8 7 4 10 10 O 1.42098 * 106.40179 * 179.64103 * 8 7 4 11 11 C 1.76199 * 107.21715 * 66.09807 * 8 7 4 12 12 C 1.37635 * 120.13100 * 245.22608 * 11 8 7 13 13 C 1.38615 * 120.24983 * 180.32215 * 12 11 8 14 14 C 1.38657 * 120.49765 * 359.66892 * 13 12 11 15 15 C 1.37598 * 120.25354 * 0.02562 * 14 13 12 16 16 C 1.40699 * 120.12571 * 64.91995 * 11 8 7 17 17 C 1.41397 * 120.24667 * 359.97438 * 16 11 8 18 18 H 1.07997 * 119.99913 * 335.28354 * 17 16 11 19 19 C 1.39941 * 120.00370 * 155.28179 * 17 16 11 20 20 N 1.30830 * 119.99731 * 331.82181 * 19 17 16 21 21 Si 1.86795 * 120.00295 * 151.82000 * 19 17 16 22 22 H 1.48495 * 109.47441 * 180.02562 * 21 19 17 23 23 H 1.48497 * 109.47329 * 300.00407 * 21 19 17 24 24 H 1.48508 * 109.46978 * 60.00156 * 21 19 17 25 25 H 1.08997 * 109.46801 * 60.00130 * 1 2 3 26 26 H 1.09003 * 109.46999 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47079 * 299.99725 * 1 2 3 28 28 H 1.08993 * 109.47074 * 60.00385 * 3 2 1 29 29 H 1.08994 * 109.47397 * 299.99522 * 3 2 1 30 30 H 1.08997 * 109.47296 * 179.97438 * 6 4 3 31 31 H 1.09004 * 109.47070 * 300.00323 * 6 4 3 32 32 H 1.08997 * 109.46926 * 59.99581 * 6 4 3 33 33 H 0.96996 * 120.00089 * 34.96093 * 7 4 3 34 34 H 1.07998 * 119.87331 * 0.02562 * 12 11 8 35 35 H 1.07994 * 119.75269 * 179.69223 * 13 12 11 36 36 H 1.08004 * 119.87542 * 180.02562 * 14 13 12 37 37 H 1.07994 * 120.12887 * 180.02562 * 15 14 13 38 38 H 0.96997 * 120.00445 * 355.39595 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9400 -0.0006 5 1 4.1702 1.3952 0.8410 6 6 4.0872 3.4253 0.1251 7 7 4.2928 1.4151 -1.2527 8 16 5.7706 0.6678 -1.2586 9 8 6.6493 1.5106 -0.5260 10 8 6.0140 0.2705 -2.6010 11 6 5.6084 -0.8159 -0.3221 12 6 6.2998 -0.9669 0.8584 13 6 6.1792 -2.1357 1.5937 14 6 5.3573 -3.1622 1.1538 15 6 4.6519 -3.0306 -0.0202 16 6 4.7666 -1.8483 -0.7749 17 6 4.0459 -1.7017 -1.9826 18 1 3.8078 -0.7155 -2.3530 19 6 3.6412 -2.8343 -2.6979 20 7 4.3329 -3.9417 -2.6155 21 14 2.1135 -2.7650 -3.7705 22 1 1.9018 -4.0852 -4.4165 23 1 0.9346 -2.4302 -2.9318 24 1 2.2890 -1.7245 -4.8155 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.8031 2.2371 0.8900 29 1 1.8032 2.2372 -0.8900 30 1 5.1702 3.5481 0.1251 31 1 3.6593 3.9702 -0.7164 32 1 3.6776 3.8158 1.0567 33 1 3.7917 1.5054 -2.0783 34 1 6.9424 -0.1736 1.2106 35 1 6.7293 -2.2476 2.5163 36 1 5.2705 -4.0684 1.7349 37 1 4.0120 -3.8312 -0.3607 38 1 5.1622 -3.9593 -2.1126 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601350035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:03 Heat of formation + Delta-G solvation = -89.946816 kcal Electronic energy + Delta-G solvation = -23350.595540 eV Core-core repulsion = 20023.617545 eV Total energy + Delta-G solvation = -3326.977995 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.48896 -38.18443 -37.61903 -36.65668 -35.81348 -31.93806 -31.50982 -31.10546 -29.68541 -28.09633 -27.08094 -23.48895 -22.95155 -22.45094 -20.43021 -19.97846 -18.58096 -17.86180 -17.49425 -16.80554 -16.54495 -16.15760 -15.69504 -15.42183 -15.13693 -14.94609 -14.89964 -14.39154 -14.24430 -14.06190 -13.89035 -13.61331 -13.31159 -13.25726 -12.98669 -12.89873 -12.79355 -12.70290 -12.57474 -12.36855 -12.16896 -11.98345 -11.89631 -11.53557 -11.17296 -10.89573 -10.50843 -10.29226 -9.89660 -9.53064 -9.28492 -8.38180 -6.52976 -0.13160 0.55309 0.94009 1.00201 1.50906 1.67208 1.79497 1.92604 2.31665 2.35109 2.63830 3.01798 3.45867 3.68910 3.87432 4.08968 4.28130 4.33241 4.39009 4.40435 4.44220 4.45410 4.63921 4.71028 4.72143 4.91325 4.95656 4.97310 5.20821 5.30042 5.38528 5.39505 5.60394 5.70246 5.78368 5.95292 6.09611 6.25570 6.30558 6.67068 6.88702 7.93704 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.008687 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.198595 B = 3222.614903 C = 4079.947537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.291 6.291 3 C -0.083 4.083 4 C 0.169 3.831 5 H 0.072 0.928 6 C -0.161 4.161 7 N -1.101 6.101 8 S 2.717 3.283 9 O -1.009 7.009 10 O -1.005 7.005 11 C -0.800 4.800 12 C 0.000 4.000 13 C -0.271 4.271 14 C -0.058 4.058 15 C -0.231 4.231 16 C 0.164 3.836 17 C -0.485 4.485 18 H 0.094 0.906 19 C 0.011 3.989 20 N -0.794 5.794 21 Si 1.096 2.904 22 H -0.276 1.276 23 H -0.247 1.247 24 H -0.256 1.256 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.420 0.580 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.735 10.209 4.319 14.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.065 6.065 3 C -0.233 4.233 4 C 0.061 3.939 5 H 0.090 0.910 6 C -0.221 4.221 7 N -0.861 5.861 8 S 2.814 3.186 9 O -1.000 7.000 10 O -0.996 6.996 11 C -0.895 4.895 12 C -0.019 4.019 13 C -0.291 4.291 14 C -0.077 4.077 15 C -0.250 4.250 16 C 0.159 3.841 17 C -0.512 4.512 18 H 0.111 0.889 19 C -0.209 4.209 20 N -0.415 5.415 21 Si 0.912 3.088 22 H -0.201 1.201 23 H -0.171 1.171 24 H -0.180 1.180 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.132 0.868 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.256 0.744 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.112 0.888 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.143 8.708 3.080 12.996 hybrid contribution 0.063 0.792 1.206 1.445 sum -9.079 9.501 4.286 13.823 Atomic orbital electron populations 1.23396 0.93455 1.06434 1.05607 1.88786 1.08127 1.11527 1.98074 1.23780 0.97730 0.94559 1.07191 1.20500 0.92322 0.96035 0.85079 0.91023 1.22285 1.02451 0.93183 1.04182 1.55374 1.39822 1.74372 1.16491 1.00391 0.72585 0.73180 0.72465 1.93419 1.64373 1.67450 1.74709 1.93484 1.84635 1.83952 1.37484 1.29963 1.20051 1.22854 1.16585 1.20552 0.93166 0.96656 0.91559 1.20718 1.08838 0.96083 1.03430 1.21089 0.94187 0.97579 0.94826 1.21289 1.05733 0.99955 0.98070 1.16988 0.85926 0.89880 0.91317 1.20921 1.28285 0.97599 1.04375 0.88851 1.28343 1.03815 0.90637 0.98070 1.70574 1.12222 1.29795 1.28944 0.83328 0.72162 0.77789 0.75519 1.20053 1.17072 1.18019 0.89527 0.88885 0.89287 0.86780 0.87774 0.92690 0.90248 0.89006 0.74383 0.86441 0.86032 0.86481 0.88787 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 10.76 113.37 1.22 -1.36 16 2 S -0.29 -8.99 21.76 -56.49 -1.23 -10.21 16 3 C -0.08 -1.85 5.52 71.98 0.40 -1.45 16 4 C 0.17 4.60 2.77 44.99 0.12 4.73 16 5 H 0.07 2.26 7.92 -2.38 -0.02 2.24 16 6 C -0.16 -3.45 9.52 71.98 0.69 -2.76 16 7 N -1.10 -36.65 4.36 -169.38 -0.74 -37.39 16 8 S 2.72 118.58 4.87 -56.49 -0.27 118.31 16 9 O -1.01 -45.14 16.21 -128.00 -2.07 -47.22 16 10 O -1.01 -50.99 16.50 -128.00 -2.11 -53.11 16 11 C -0.80 -38.10 5.88 22.73 0.13 -37.97 16 12 C 0.00 0.02 9.53 22.22 0.21 0.23 16 13 C -0.27 -11.61 10.05 22.46 0.23 -11.39 16 14 C -0.06 -2.59 10.02 22.22 0.22 -2.36 16 15 C -0.23 -11.43 8.01 22.73 0.18 -11.25 16 16 C 0.16 8.22 5.30 -21.29 -0.11 8.11 16 17 C -0.49 -23.98 7.32 23.46 0.17 -23.81 16 18 H 0.09 4.39 5.65 -2.91 -0.02 4.37 16 19 C 0.01 0.55 4.87 85.25 0.42 0.97 16 20 N -0.79 -41.54 12.35 21.83 0.27 -41.27 16 21 Si 1.10 41.29 30.01 68.60 2.06 43.35 16 22 H -0.28 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.25 -8.39 7.11 99.48 0.71 -7.68 16 24 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 25 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.44 7.64 -2.39 -0.02 1.42 16 31 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.42 12.53 8.53 -96.75 -0.83 11.70 16 34 H 0.12 4.90 7.32 -2.91 -0.02 4.88 16 35 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 36 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 37 H 0.09 4.82 6.53 -2.91 -0.02 4.81 16 38 H 0.29 15.74 6.82 -92.71 -0.63 15.11 16 Total: -1.00 -66.62 340.44 0.16 -66.45 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: 0.39 Total: 39.41 kcal Atomic # 6 Polarization: -82.19 SS G_CDS: 3.88 Total: -78.31 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -0.47 Total: -78.67 kcal Atomic # 8 Polarization: -96.14 SS G_CDS: -4.19 Total: -100.32 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.06 Total: 43.35 kcal Atomic # 16 Polarization: 109.60 SS G_CDS: -1.50 Total: 108.09 kcal Total: -66.62 0.16 -66.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601350035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.492 kcal (2) G-P(sol) polarization free energy of solvation -66.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds