Wall clock time and date at job start Tue Mar 31 2020 11:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81396 * 103.00011 * 2 1 4 4 C 1.52995 * 109.47167 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.47271 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.46909 * 180.02562 * 5 4 3 7 7 S 1.65603 * 119.99589 * 165.98878 * 6 5 4 8 8 O 1.42094 * 106.40112 * 176.35341 * 7 6 5 9 9 O 1.42104 * 106.40237 * 309.26969 * 7 6 5 10 10 C 1.76201 * 107.21941 * 62.81089 * 7 6 5 11 11 C 1.37634 * 120.12642 * 245.80778 * 10 7 6 12 12 C 1.38609 * 120.25011 * 179.97438 * 11 10 7 13 13 C 1.38658 * 120.50091 * 0.02562 * 12 11 10 14 14 C 1.37604 * 120.24632 * 0.02562 * 13 12 11 15 15 C 1.40692 * 120.12579 * 65.53950 * 10 7 6 16 16 C 1.41388 * 120.24674 * 359.97438 * 15 10 7 17 17 H 1.08003 * 120.00120 * 331.43579 * 16 15 10 18 18 C 1.39954 * 120.00303 * 151.43368 * 16 15 10 19 19 N 1.30815 * 119.99712 * 348.42083 * 18 16 15 20 20 Si 1.86801 * 120.00061 * 168.41406 * 18 16 15 21 21 H 1.48499 * 109.46783 * 60.00543 * 20 18 16 22 22 H 1.48497 * 109.46986 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47316 * 300.00366 * 20 18 16 24 24 H 1.09002 * 109.47479 * 60.00449 * 1 2 3 25 25 H 1.09003 * 109.47481 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47343 * 300.00148 * 1 2 3 27 27 H 1.08995 * 109.47278 * 59.99525 * 3 2 1 28 28 H 1.09002 * 109.47098 * 300.00003 * 3 2 1 29 29 H 1.09000 * 109.46992 * 60.00037 * 4 3 2 30 30 H 1.08992 * 109.47209 * 300.00211 * 4 3 2 31 31 H 1.09000 * 109.46810 * 60.00258 * 5 4 3 32 32 H 1.08999 * 109.46811 * 300.00295 * 5 4 3 33 33 H 0.97001 * 120.00342 * 345.70637 * 6 5 4 34 34 H 1.08001 * 119.87762 * 0.02562 * 11 10 7 35 35 H 1.07999 * 119.75741 * 180.02562 * 12 11 10 36 36 H 1.08000 * 119.87849 * 180.02562 * 13 12 11 37 37 H 1.07999 * 120.12698 * 179.97438 * 14 13 12 38 38 H 0.96998 * 120.00410 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9399 0.0006 5 6 4.0865 3.4308 0.0000 6 7 5.5421 3.5958 0.0000 7 16 6.2080 5.0716 -0.3479 8 8 7.6120 4.9272 -0.1831 9 8 5.6085 5.5065 -1.5606 10 6 5.6731 6.1928 0.9017 11 6 4.8442 7.2430 0.5786 12 6 4.4214 8.1262 1.5596 13 6 4.8275 7.9637 2.8754 14 6 5.6569 6.9215 3.2211 15 6 6.0870 6.0147 2.2345 16 6 6.9334 4.9359 2.5792 17 1 6.9054 4.0223 2.0039 18 6 7.8076 5.0518 3.6660 19 7 8.0100 6.2190 4.2209 20 14 8.6850 3.5398 4.3244 21 1 9.5234 2.9477 3.2513 22 1 9.5480 3.9275 5.4690 23 1 7.6817 2.5425 4.7758 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8031 2.2371 0.8899 28 1 1.8031 2.2371 -0.8900 29 1 4.1615 1.4702 -0.8891 30 1 4.1608 1.4704 0.8908 31 1 3.6671 3.9008 0.8896 32 1 3.6679 3.8998 -0.8904 33 1 6.1158 2.8417 0.2078 34 1 4.5213 7.3790 -0.4430 35 1 3.7707 8.9473 1.2973 36 1 4.4917 8.6576 3.6317 37 1 5.9723 6.7969 4.2464 38 1 8.6155 6.2994 4.9744 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601350604.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:32 Heat of formation + Delta-G solvation = -73.154942 kcal Electronic energy + Delta-G solvation = -22085.086671 eV Core-core repulsion = 18758.836827 eV Total energy + Delta-G solvation = -3326.249845 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -37.61324 -36.37437 -36.00091 -34.83775 -33.90863 -32.05547 -30.23682 -29.56945 -29.18657 -25.71800 -25.46044 -21.84624 -21.60594 -21.13544 -18.60737 -17.72346 -16.82046 -16.54921 -16.09562 -15.76589 -15.36940 -15.27168 -14.40467 -14.26094 -13.87744 -13.82631 -13.54716 -13.27952 -13.18839 -12.91686 -12.76573 -12.19210 -11.90277 -11.67241 -11.52718 -11.30007 -11.17402 -11.14251 -11.08212 -11.01408 -10.84981 -10.65464 -10.52655 -10.15583 -9.93165 -9.47268 -9.43032 -8.80092 -8.05526 -7.86626 -7.62323 -7.04092 -4.77953 1.40396 1.59957 2.32359 2.40815 2.72776 2.95989 2.99075 3.11813 3.76790 3.90960 4.39510 4.70465 4.79867 4.81693 4.89289 4.90882 5.07412 5.27466 5.42226 5.43389 5.47769 5.65056 5.73040 5.96666 6.03835 6.12662 6.22237 6.34669 6.41511 6.75998 6.93569 7.06894 7.28816 7.46550 7.51952 7.65864 7.79160 7.87496 8.26991 8.48404 8.63256 9.88584 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.011480 B = 0.004587 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.438795 B = 6102.372910 C = 6907.829817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.269 6.269 3 C -0.082 4.082 4 C -0.111 4.111 5 C 0.130 3.870 6 N -1.122 6.122 7 S 2.700 3.300 8 O -0.963 6.963 9 O -0.998 6.998 10 C -0.776 4.776 11 C -0.003 4.003 12 C -0.251 4.251 13 C -0.077 4.077 14 C -0.158 4.158 15 C 0.186 3.814 16 C -0.445 4.445 17 H 0.087 0.913 18 C 0.081 3.919 19 N -0.776 5.776 20 Si 0.914 3.086 21 H -0.256 1.256 22 H -0.274 1.274 23 H -0.259 1.259 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.412 0.588 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.068 -8.443 -2.442 13.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.043 6.043 3 C -0.231 4.231 4 C -0.151 4.151 5 C 0.001 3.999 6 N -0.879 5.879 7 S 2.798 3.202 8 O -0.954 6.954 9 O -0.989 6.989 10 C -0.871 4.871 11 C -0.023 4.023 12 C -0.271 4.271 13 C -0.096 4.096 14 C -0.178 4.178 15 C 0.181 3.819 16 C -0.473 4.473 17 H 0.105 0.895 18 C -0.141 4.141 19 N -0.400 5.400 20 Si 0.737 3.263 21 H -0.180 1.180 22 H -0.199 1.199 23 H -0.183 1.183 24 H 0.095 0.905 25 H 0.117 0.883 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.245 0.755 34 H 0.126 0.874 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.143 0.857 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.833 -8.896 -3.057 12.904 hybrid contribution -0.615 0.515 1.196 1.440 sum -9.448 -8.381 -1.861 12.766 Atomic orbital electron populations 1.23363 0.94330 1.06345 1.04957 1.86927 1.07212 1.12054 1.98107 1.23359 1.00393 0.93775 1.05551 1.21510 0.92545 0.96754 1.04259 1.21066 0.80685 0.95847 1.02268 1.55671 1.13685 1.29123 1.89439 1.01082 0.73112 0.72471 0.73534 1.93549 1.29222 1.85480 1.87118 1.93444 1.79165 1.81675 1.44599 1.29851 1.26077 1.19037 1.12171 1.20250 0.92289 0.92203 0.97577 1.20489 1.09380 1.03237 0.94018 1.20908 0.96583 0.96798 0.95314 1.21527 0.99277 0.96945 1.00031 1.16996 0.86033 0.90480 0.88350 1.19824 1.15907 1.00584 1.10989 0.89522 1.25952 0.95815 0.97521 0.94784 1.69764 1.27708 1.24318 1.18164 0.86232 0.79780 0.81148 0.79140 1.17999 1.19893 1.18350 0.90509 0.88253 0.90458 0.89474 0.89619 0.90280 0.90041 0.91403 0.90756 0.75518 0.87442 0.88766 0.88835 0.85694 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.76 101.05 1.09 0.19 16 2 S -0.27 -2.85 22.38 -107.50 -2.41 -5.26 16 3 C -0.08 -0.83 5.94 37.15 0.22 -0.61 16 4 C -0.11 -1.28 5.36 -26.73 -0.14 -1.42 16 5 C 0.13 1.84 6.19 -4.04 -0.02 1.81 16 6 N -1.12 -18.92 5.14 -10.61 -0.05 -18.97 16 7 S 2.70 58.24 4.96 -107.50 -0.53 57.70 16 8 O -0.96 -23.83 16.52 -57.17 -0.94 -24.77 16 9 O -1.00 -22.44 16.53 -57.17 -0.94 -23.39 16 10 C -0.78 -18.27 5.90 -38.88 -0.23 -18.50 16 11 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 12 C -0.25 -5.41 10.05 -39.29 -0.39 -5.80 16 13 C -0.08 -1.71 10.02 -39.66 -0.40 -2.10 16 14 C -0.16 -3.86 8.66 -38.87 -0.34 -4.19 16 15 C 0.19 4.67 5.55 -106.83 -0.59 4.08 16 16 C -0.44 -11.00 7.63 -37.74 -0.29 -11.29 16 17 H 0.09 1.99 5.82 -52.48 -0.31 1.68 16 18 C 0.08 1.92 5.24 -17.34 -0.09 1.83 16 19 N -0.78 -18.95 10.85 55.55 0.60 -18.35 16 20 Si 0.91 17.81 29.58 -169.99 -5.03 12.78 16 21 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 22 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 23 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 24 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16 25 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 26 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.03 7.82 -51.93 -0.41 0.62 16 33 H 0.41 6.17 8.48 -34.47 -0.29 5.88 16 34 H 0.11 2.22 7.32 -52.49 -0.38 1.83 16 35 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.13 3.08 6.22 -52.49 -0.33 2.75 16 38 H 0.29 6.35 8.30 -40.82 -0.34 6.01 16 LS Contribution 343.32 15.07 5.17 5.17 Total: -1.00 -30.42 343.32 -10.78 -41.20 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -5.08 Total: 10.34 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: -1.57 Total: -36.47 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.55 Total: -37.32 kcal Atomic # 8 Polarization: -46.27 SS G_CDS: -1.89 Total: -48.16 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Atomic # 16 Polarization: 55.39 SS G_CDS: -2.94 Total: 52.45 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.42 -10.78 -41.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601350604.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.951 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds