Wall clock time and date at job start Tue Mar 31 2020 11:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81396 * 103.00011 * 2 1 4 4 C 1.52995 * 109.47167 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.47271 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.46909 * 180.02562 * 5 4 3 7 7 S 1.65603 * 119.99589 * 165.98878 * 6 5 4 8 8 O 1.42094 * 106.40112 * 176.35341 * 7 6 5 9 9 O 1.42104 * 106.40237 * 309.26969 * 7 6 5 10 10 C 1.76201 * 107.21941 * 62.81089 * 7 6 5 11 11 C 1.37634 * 120.12642 * 245.80778 * 10 7 6 12 12 C 1.38609 * 120.25011 * 179.97438 * 11 10 7 13 13 C 1.38658 * 120.50091 * 0.02562 * 12 11 10 14 14 C 1.37604 * 120.24632 * 0.02562 * 13 12 11 15 15 C 1.40692 * 120.12579 * 65.53950 * 10 7 6 16 16 C 1.41388 * 120.24674 * 359.97438 * 15 10 7 17 17 H 1.08003 * 120.00120 * 331.43579 * 16 15 10 18 18 C 1.39954 * 120.00303 * 151.43368 * 16 15 10 19 19 N 1.30815 * 119.99712 * 348.42083 * 18 16 15 20 20 Si 1.86801 * 120.00061 * 168.41406 * 18 16 15 21 21 H 1.48499 * 109.46783 * 60.00543 * 20 18 16 22 22 H 1.48497 * 109.46986 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47316 * 300.00366 * 20 18 16 24 24 H 1.09002 * 109.47479 * 60.00449 * 1 2 3 25 25 H 1.09003 * 109.47481 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47343 * 300.00148 * 1 2 3 27 27 H 1.08995 * 109.47278 * 59.99525 * 3 2 1 28 28 H 1.09002 * 109.47098 * 300.00003 * 3 2 1 29 29 H 1.09000 * 109.46992 * 60.00037 * 4 3 2 30 30 H 1.08992 * 109.47209 * 300.00211 * 4 3 2 31 31 H 1.09000 * 109.46810 * 60.00258 * 5 4 3 32 32 H 1.08999 * 109.46811 * 300.00295 * 5 4 3 33 33 H 0.97001 * 120.00342 * 345.70637 * 6 5 4 34 34 H 1.08001 * 119.87762 * 0.02562 * 11 10 7 35 35 H 1.07999 * 119.75741 * 180.02562 * 12 11 10 36 36 H 1.08000 * 119.87849 * 180.02562 * 13 12 11 37 37 H 1.07999 * 120.12698 * 179.97438 * 14 13 12 38 38 H 0.96998 * 120.00410 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9399 0.0006 5 6 4.0865 3.4308 0.0000 6 7 5.5421 3.5958 0.0000 7 16 6.2080 5.0716 -0.3479 8 8 7.6120 4.9272 -0.1831 9 8 5.6085 5.5065 -1.5606 10 6 5.6731 6.1928 0.9017 11 6 4.8442 7.2430 0.5786 12 6 4.4214 8.1262 1.5596 13 6 4.8275 7.9637 2.8754 14 6 5.6569 6.9215 3.2211 15 6 6.0870 6.0147 2.2345 16 6 6.9334 4.9359 2.5792 17 1 6.9054 4.0223 2.0039 18 6 7.8076 5.0518 3.6660 19 7 8.0100 6.2190 4.2209 20 14 8.6850 3.5398 4.3244 21 1 9.5234 2.9477 3.2513 22 1 9.5480 3.9275 5.4690 23 1 7.6817 2.5425 4.7758 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8031 2.2371 0.8899 28 1 1.8031 2.2371 -0.8900 29 1 4.1615 1.4702 -0.8891 30 1 4.1608 1.4704 0.8908 31 1 3.6671 3.9008 0.8896 32 1 3.6679 3.8998 -0.8904 33 1 6.1158 2.8417 0.2078 34 1 4.5213 7.3790 -0.4430 35 1 3.7707 8.9473 1.2973 36 1 4.4917 8.6576 3.6317 37 1 5.9723 6.7969 4.2464 38 1 8.6155 6.2994 4.9744 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601350604.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:31 Heat of formation + Delta-G solvation = -92.174753 kcal Electronic energy + Delta-G solvation = -22085.911432 eV Core-core repulsion = 18758.836827 eV Total energy + Delta-G solvation = -3327.074606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.37497 -38.06540 -37.28744 -36.65878 -35.66645 -33.18905 -32.00452 -31.34336 -29.77448 -27.37088 -26.67561 -23.44625 -22.98425 -22.71389 -20.23529 -19.50139 -18.45662 -17.90899 -17.45981 -17.15049 -16.71373 -16.51387 -16.01718 -15.78702 -15.10267 -14.93813 -14.68191 -14.55883 -14.46163 -14.36877 -13.85631 -13.63164 -13.32126 -13.19136 -13.00071 -12.93679 -12.84249 -12.78256 -12.75854 -12.49307 -12.15620 -12.09718 -11.94318 -11.66059 -11.17485 -11.12200 -10.92318 -10.24913 -9.83284 -9.42515 -8.78715 -8.67006 -6.60975 -0.17052 0.53912 0.75228 0.98684 1.37376 1.48546 1.53452 1.69777 2.16375 2.36240 2.64417 2.99472 3.48330 3.79771 3.93256 3.94760 4.07295 4.34496 4.36599 4.38296 4.44900 4.51315 4.61557 4.66878 4.72060 4.83432 4.91668 4.99938 5.10279 5.15901 5.26268 5.32339 5.52741 5.71509 5.83403 6.01536 6.08760 6.22385 6.48314 6.68125 6.84362 8.16921 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.011480 B = 0.004587 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.438795 B = 6102.372910 C = 6907.829817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.315 6.315 3 C -0.074 4.074 4 C -0.102 4.102 5 C 0.124 3.876 6 N -1.111 6.111 7 S 2.720 3.280 8 O -1.000 7.000 9 O -1.009 7.009 10 C -0.792 4.792 11 C -0.016 4.016 12 C -0.250 4.250 13 C -0.076 4.076 14 C -0.187 4.187 15 C 0.162 3.838 16 C -0.475 4.475 17 H 0.094 0.906 18 C 0.039 3.961 19 N -0.808 5.808 20 Si 0.974 3.026 21 H -0.262 1.262 22 H -0.263 1.263 23 H -0.245 1.245 24 H 0.087 0.913 25 H 0.110 0.890 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.421 0.579 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.505 -9.149 -2.537 14.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.090 6.090 3 C -0.223 4.223 4 C -0.142 4.142 5 C -0.003 4.003 6 N -0.872 5.872 7 S 2.817 3.183 8 O -0.990 6.990 9 O -0.999 6.999 10 C -0.886 4.886 11 C -0.035 4.035 12 C -0.270 4.270 13 C -0.095 4.095 14 C -0.206 4.206 15 C 0.158 3.842 16 C -0.503 4.503 17 H 0.112 0.888 18 C -0.179 4.179 19 N -0.432 5.432 20 Si 0.794 3.206 21 H -0.186 1.186 22 H -0.187 1.187 23 H -0.168 1.168 24 H 0.106 0.894 25 H 0.129 0.871 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.256 0.744 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.132 0.868 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.287 -9.581 -3.143 14.404 hybrid contribution -0.296 0.789 1.154 1.429 sum -10.583 -8.792 -1.989 13.902 Atomic orbital electron populations 1.23424 0.91051 1.07439 1.05893 1.87072 1.10916 1.12750 1.98238 1.23283 0.99169 0.93423 1.06410 1.21411 0.93823 0.94583 1.04407 1.21284 0.78687 0.97901 1.02455 1.55283 1.15203 1.27614 1.89117 1.00333 0.72157 0.72925 0.72922 1.93493 1.31819 1.86242 1.87461 1.93422 1.79142 1.82407 1.44904 1.30148 1.26025 1.20238 1.12177 1.20582 0.92164 0.92065 0.98716 1.20897 1.09043 1.03610 0.93492 1.21256 0.95380 0.96314 0.96503 1.21587 1.00936 0.98451 0.99673 1.17303 0.86652 0.91133 0.89152 1.20132 1.16832 1.01089 1.12254 0.88834 1.26800 0.96228 1.00189 0.94663 1.69808 1.28625 1.25960 1.18841 0.85346 0.78903 0.77856 0.78530 1.18598 1.18735 1.16837 0.89425 0.87093 0.89657 0.88917 0.88480 0.89898 0.90209 0.91635 0.90185 0.74352 0.85861 0.85469 0.86027 0.86787 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.76 113.37 1.22 -0.15 16 2 S -0.32 -6.22 22.38 -56.49 -1.26 -7.48 16 3 C -0.07 -1.37 5.94 71.98 0.43 -0.94 16 4 C -0.10 -2.22 5.36 30.60 0.16 -2.05 16 5 C 0.12 3.37 6.19 86.38 0.53 3.91 16 6 N -1.11 -36.86 5.14 -187.48 -0.96 -37.83 16 7 S 2.72 117.14 4.96 -56.49 -0.28 116.86 16 8 O -1.00 -50.12 16.52 -128.00 -2.11 -52.23 16 9 O -1.01 -44.64 16.53 -128.00 -2.12 -46.75 16 10 C -0.79 -37.31 5.90 22.73 0.13 -37.17 16 11 C -0.02 -0.68 9.53 22.22 0.21 -0.47 16 12 C -0.25 -10.32 10.05 22.46 0.23 -10.09 16 13 C -0.08 -3.28 10.02 22.22 0.22 -3.06 16 14 C -0.19 -9.21 8.66 22.73 0.20 -9.01 16 15 C 0.16 8.25 5.55 -21.29 -0.12 8.13 16 16 C -0.48 -23.86 7.63 23.46 0.18 -23.68 16 17 H 0.09 4.35 5.82 -2.91 -0.02 4.34 16 18 C 0.04 1.88 5.24 85.26 0.45 2.33 16 19 N -0.81 -40.19 10.85 21.83 0.24 -39.95 16 20 Si 0.97 36.35 29.58 68.60 2.03 38.38 16 21 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 22 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 23 H -0.24 -8.48 7.11 99.48 0.71 -7.77 16 24 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.08 2.09 7.82 -2.39 -0.02 2.07 16 33 H 0.42 12.42 8.48 -96.74 -0.82 11.60 16 34 H 0.12 4.90 7.32 -2.91 -0.02 4.87 16 35 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.11 5.77 6.22 -2.91 -0.02 5.76 16 38 H 0.30 13.19 8.30 -92.71 -0.77 12.42 16 Total: -1.00 -65.26 343.32 -0.37 -65.63 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: 0.25 Total: 35.65 kcal Atomic # 6 Polarization: -76.11 SS G_CDS: 3.84 Total: -72.27 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -0.73 Total: -77.78 kcal Atomic # 8 Polarization: -94.76 SS G_CDS: -4.23 Total: -98.99 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.38 kcal Atomic # 16 Polarization: 110.92 SS G_CDS: -1.54 Total: 109.37 kcal Total: -65.26 -0.37 -65.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601350604.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.544 kcal (2) G-P(sol) polarization free energy of solvation -65.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds