Wall clock time and date at job start Tue Mar 31 2020 10:49:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34228 * 116.99942 * 2 1
4 4 O 1.20831 * 120.00028 * 0.02562 * 3 2 1
5 5 C 1.50700 * 120.00022 * 180.02562 * 3 2 1
6 6 H 1.08999 * 109.47236 * 59.99520 * 5 3 2
7 7 N 1.46900 * 109.47331 * 180.02562 * 5 3 2
8 8 C 1.46901 * 110.99609 * 274.99863 * 7 5 3
9 9 H 1.09001 * 109.47247 * 35.00214 * 8 7 5
10 10 C 1.53002 * 109.47099 * 275.00052 * 8 7 5
11 11 C 1.50703 * 109.46969 * 155.00050 * 8 7 5
12 12 H 1.07996 * 120.00292 * 33.98355 * 11 8 7
13 13 C 1.37884 * 119.99471 * 214.25839 * 11 8 7
14 14 N 1.31511 * 119.99332 * 181.72707 * 13 11 8
15 15 Si 1.86794 * 120.00313 * 1.72456 * 13 11 8
16 16 H 1.48503 * 109.47011 * 85.07361 * 15 13 11
17 17 H 1.48493 * 109.47088 * 205.07379 * 15 13 11
18 18 H 1.48502 * 109.47095 * 325.07750 * 15 13 11
19 19 C 1.50705 * 109.47071 * 300.00148 * 5 3 2
20 20 C 1.38454 * 120.02084 * 104.99767 * 19 5 3
21 21 F 1.35098 * 120.01935 * 359.97438 * 20 19 5
22 22 C 1.38452 * 119.96360 * 180.02562 * 20 19 5
23 23 C 1.38228 * 120.00020 * 0.02562 * 22 20 19
24 24 C 1.38205 * 120.03483 * 359.97356 * 23 22 20
25 25 C 1.38294 * 120.01751 * 284.73073 * 19 5 3
26 26 Cl 1.73602 * 120.00077 * 359.97438 * 25 19 5
27 27 H 1.08999 * 109.47318 * 59.99671 * 1 2 3
28 28 H 1.09001 * 109.47112 * 180.02562 * 1 2 3
29 29 H 1.09008 * 109.46619 * 299.99393 * 1 2 3
30 30 H 1.00891 * 111.00391 * 151.04489 * 7 5 3
31 31 H 1.08996 * 109.47219 * 184.09098 * 10 8 7
32 32 H 1.09004 * 109.46847 * 304.08702 * 10 8 7
33 33 H 1.08991 * 109.47366 * 64.08805 * 10 8 7
34 34 H 0.97005 * 119.99954 * 180.02562 * 14 13 11
35 35 H 1.08000 * 119.99792 * 180.02562 * 22 20 19
36 36 H 1.07992 * 119.98175 * 180.02562 * 23 22 20
37 37 H 1.08001 * 119.97588 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2094 0.0005
5 6 3.5663 1.2749 -0.0006
6 1 3.9557 0.7809 -0.8908
7 7 3.9829 2.6836 0.0002
8 6 4.0169 3.2231 -1.3658
9 1 3.2141 2.7770 -1.9528
10 6 5.3644 2.8931 -2.0110
11 6 3.8346 4.7184 -1.3199
12 1 4.2348 5.2861 -0.4929
13 6 3.1520 5.3609 -2.3311
14 7 3.0222 6.6694 -2.3085
15 14 2.4116 4.3728 -3.7328
16 1 1.0686 3.8793 -3.3352
17 1 2.2860 5.2360 -4.9345
18 1 3.2916 3.2175 -4.0429
19 6 4.1056 0.5914 1.2296
20 6 4.6951 -0.6571 1.1261
21 9 4.7868 -1.2636 -0.0776
22 6 5.1898 -1.2841 2.2571
23 6 5.0944 -0.6639 3.4887
24 6 4.5060 0.5824 3.5919
25 6 4.0170 1.2134 2.4616
26 17 3.2848 2.7821 2.5913
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8901
30 1 4.8759 2.7964 0.4558
31 1 5.4181 3.3551 -2.9967
32 1 6.1704 3.2770 -1.3855
33 1 5.4648 1.8124 -2.1103
34 1 2.5417 7.1214 -3.0196
35 1 5.6501 -2.2578 2.1769
36 1 5.4807 -1.1531 4.3706
37 1 4.4323 1.0663 4.5547
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602868856.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:49:39
Heat of formation + Delta-G solvation = -90.507345 kcal
Electronic energy + Delta-G solvation = -25143.446484 eV
Core-core repulsion = 21248.187300 eV
Total energy + Delta-G solvation = -3895.259184 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 315.082 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-49.04947 -40.29334 -39.12251 -36.73270 -36.08789 -35.52324 -33.12608 -31.53484
-30.53291 -28.96536 -27.83220 -25.54582 -25.02492 -22.94294 -22.58906 -20.54287
-19.87619 -17.96813 -17.47077 -17.08445 -16.64642 -16.30718 -16.05011 -15.64964
-15.41630 -14.78223 -14.62137 -14.22446 -13.78089 -13.60836 -13.46687 -12.99230
-12.87066 -12.60661 -12.35896 -12.23661 -12.01047 -11.91815 -11.50326 -11.35208
-11.18102 -11.02976 -10.70073 -10.56804 -10.42288 -10.13771 -9.91901 -9.72177
-9.13017 -8.89842 -8.75863 -8.47093 -7.50151 -5.98032 -3.93976 0.82520
0.88045 2.29750 2.70650 2.94730 3.28684 3.35199 3.40405 3.43592
4.06449 4.37407 4.49610 4.56122 4.65407 4.98810 5.02829 5.20341
5.25631 5.30555 5.35343 5.39792 5.52456 5.67575 5.68899 5.81002
5.94497 6.00416 6.18157 6.33594 6.52152 6.55178 6.69645 6.74871
7.10298 7.62138 7.86050 8.18528 8.31324 8.68857 9.09822 9.65133
11.15642
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.015081 B = 0.005696 C = 0.005442
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1856.209599 B = 4914.719954 C = 5143.905943
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.370 6.370
3 C 0.455 3.545
4 O -0.448 6.448
5 C 0.137 3.863
6 H 0.086 0.914
7 N -0.636 5.636
8 C 0.182 3.818
9 H 0.035 0.965
10 C -0.174 4.174
11 C -0.479 4.479
12 H 0.078 0.922
13 C 0.075 3.925
14 N -0.900 5.900
15 Si 0.869 3.131
16 H -0.275 1.275
17 H -0.289 1.289
18 H -0.269 1.269
19 C -0.120 4.120
20 C 0.130 3.870
21 F -0.128 7.128
22 C -0.158 4.158
23 C -0.076 4.076
24 C -0.129 4.129
25 C 0.003 3.997
26 Cl -0.002 7.002
27 H 0.060 0.940
28 H 0.095 0.905
29 H 0.060 0.940
30 H 0.342 0.658
31 H 0.056 0.944
32 H 0.049 0.951
33 H 0.019 0.981
34 H 0.262 0.738
35 H 0.141 0.859
36 H 0.140 0.860
37 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.486 -18.400 11.030 21.596
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 O -0.287 6.287
3 C 0.292 3.708
4 O -0.329 6.329
5 C 0.025 3.975
6 H 0.103 0.897
7 N -0.270 5.270
8 C 0.074 3.926
9 H 0.053 0.947
10 C -0.234 4.234
11 C -0.517 4.517
12 H 0.096 0.904
13 C -0.127 4.127
14 N -0.539 5.539
15 Si 0.697 3.303
16 H -0.201 1.201
17 H -0.216 1.216
18 H -0.194 1.194
19 C -0.123 4.123
20 C 0.110 3.890
21 F -0.106 7.106
22 C -0.177 4.177
23 C -0.095 4.095
24 C -0.147 4.147
25 C -0.024 4.024
26 Cl 0.028 6.972
27 H 0.079 0.921
28 H 0.113 0.887
29 H 0.079 0.921
30 H 0.164 0.836
31 H 0.075 0.925
32 H 0.068 0.932
33 H 0.038 0.962
34 H 0.072 0.928
35 H 0.159 0.841
36 H 0.158 0.842
37 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges 1.457 -17.519 11.010 20.743
hybrid contribution 0.046 -0.866 -1.465 1.702
sum 1.503 -18.385 9.545 20.770
Atomic orbital electron populations
1.23156 0.77130 1.02907 1.02496 1.86485 1.22773 1.34293 1.85185
1.23557 0.91488 0.81449 0.74274 1.90742 1.65622 1.35595 1.40895
1.19780 0.88601 0.93869 0.95212 0.89704 1.60934 1.35161 1.08777
1.22089 1.19751 0.92054 0.97038 0.83755 0.94703 1.22715 1.01151
0.97288 1.02234 1.20680 1.34643 0.88390 1.08023 0.90370 1.24886
0.95424 0.94664 0.97714 1.69874 1.42622 1.07668 1.33697 0.86998
0.80580 0.80367 0.82325 1.20104 1.21555 1.19432 1.19578 1.03194
0.94543 0.94949 1.17322 0.99487 0.90919 0.81257 1.91524 1.94003
1.82352 1.42765 1.21150 1.03288 1.01704 0.91523 1.20966 0.97183
0.94170 0.97148 1.21173 0.99923 0.95717 0.97932 1.20847 0.97933
0.90617 0.93043 1.98508 1.79708 1.21086 1.97917 0.92122 0.88665
0.92115 0.83640 0.92519 0.93176 0.96191 0.92777 0.84134 0.84177
0.84176
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.50 10.56 101.05 1.07 1.57 16
2 O -0.37 -6.24 10.48 -39.25 -0.41 -6.66 16
3 C 0.45 8.96 6.39 36.01 0.23 9.19 16
4 O -0.45 -10.41 15.94 -18.75 -0.30 -10.70 16
5 C 0.14 2.52 2.26 -70.01 -0.16 2.36 16
6 H 0.09 1.54 6.28 -51.93 -0.33 1.21 16
7 N -0.64 -13.19 3.31 -103.39 -0.34 -13.53 16
8 C 0.18 4.33 1.81 -68.86 -0.12 4.20 16
9 H 0.03 0.89 4.97 -51.93 -0.26 0.63 16
10 C -0.17 -3.65 9.11 37.16 0.34 -3.31 16
11 C -0.48 -13.63 9.20 -34.44 -0.32 -13.94 16
12 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16
13 C 0.07 2.21 5.47 -17.82 -0.10 2.11 16
14 N -0.90 -28.16 13.96 55.43 0.77 -27.38 16
15 Si 0.87 22.57 26.69 -169.99 -4.54 18.04 16
16 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16
17 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16
18 H -0.27 -6.60 6.84 56.52 0.39 -6.22 16
19 C -0.12 -1.82 4.60 -104.52 -0.48 -2.30 16
20 C 0.13 1.71 7.25 -39.42 -0.29 1.42 16
21 F -0.13 -1.78 16.27 2.25 0.04 -1.75 16
22 C -0.16 -1.55 10.03 -39.51 -0.40 -1.94 16
23 C -0.08 -0.65 10.04 -39.60 -0.40 -1.05 16
24 C -0.13 -1.35 9.83 -39.54 -0.39 -1.74 16
25 C 0.00 0.05 6.00 -39.51 -0.24 -0.19 16
26 Cl 0.00 -0.03 25.35 -51.86 -1.31 -1.35 16
27 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16
28 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16
29 H 0.06 0.80 8.13 -51.92 -0.42 0.38 16
30 H 0.34 6.57 7.47 -39.30 -0.29 6.28 16
31 H 0.06 1.24 7.85 -51.93 -0.41 0.83 16
32 H 0.05 0.98 8.06 -51.93 -0.42 0.56 16
33 H 0.02 0.36 7.48 -51.93 -0.39 -0.03 16
34 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16
35 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16
36 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16
37 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16
LS Contribution 332.65 15.07 5.01 5.01
Total: -1.00 -33.69 332.65 -6.53 -40.22
By element:
Atomic # 1 Polarization: 5.93 SS G_CDS: -4.20 Total: 1.73 kcal
Atomic # 6 Polarization: -2.38 SS G_CDS: -1.25 Total: -3.62 kcal
Atomic # 7 Polarization: -41.35 SS G_CDS: 0.43 Total: -40.92 kcal
Atomic # 8 Polarization: -16.65 SS G_CDS: -0.71 Total: -17.36 kcal
Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal
Atomic # 14 Polarization: 22.57 SS G_CDS: -4.54 Total: 18.04 kcal
Atomic # 17 Polarization: -0.03 SS G_CDS: -1.31 Total: -1.35 kcal
Total LS contribution 5.01 Total: 5.01 kcal
Total: -33.69 -6.53 -40.22 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602868856.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.292 kcal
(2) G-P(sol) polarization free energy of solvation -33.685 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.977 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.507 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds