Wall clock time and date at job start Tue Mar 31 2020 10:49:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34228 * 116.99942 * 2 1
4 4 O 1.20831 * 120.00028 * 0.02562 * 3 2 1
5 5 C 1.50700 * 120.00022 * 180.02562 * 3 2 1
6 6 H 1.08999 * 109.47236 * 59.99520 * 5 3 2
7 7 N 1.46900 * 109.47331 * 180.02562 * 5 3 2
8 8 C 1.46901 * 110.99609 * 274.99863 * 7 5 3
9 9 H 1.09001 * 109.47247 * 35.00214 * 8 7 5
10 10 C 1.53002 * 109.47099 * 275.00052 * 8 7 5
11 11 C 1.50703 * 109.46969 * 155.00050 * 8 7 5
12 12 H 1.07996 * 120.00292 * 33.98355 * 11 8 7
13 13 C 1.37884 * 119.99471 * 214.25839 * 11 8 7
14 14 N 1.31511 * 119.99332 * 181.72707 * 13 11 8
15 15 Si 1.86794 * 120.00313 * 1.72456 * 13 11 8
16 16 H 1.48503 * 109.47011 * 85.07361 * 15 13 11
17 17 H 1.48493 * 109.47088 * 205.07379 * 15 13 11
18 18 H 1.48502 * 109.47095 * 325.07750 * 15 13 11
19 19 C 1.50705 * 109.47071 * 300.00148 * 5 3 2
20 20 C 1.38454 * 120.02084 * 104.99767 * 19 5 3
21 21 F 1.35098 * 120.01935 * 359.97438 * 20 19 5
22 22 C 1.38452 * 119.96360 * 180.02562 * 20 19 5
23 23 C 1.38228 * 120.00020 * 0.02562 * 22 20 19
24 24 C 1.38205 * 120.03483 * 359.97356 * 23 22 20
25 25 C 1.38294 * 120.01751 * 284.73073 * 19 5 3
26 26 Cl 1.73602 * 120.00077 * 359.97438 * 25 19 5
27 27 H 1.08999 * 109.47318 * 59.99671 * 1 2 3
28 28 H 1.09001 * 109.47112 * 180.02562 * 1 2 3
29 29 H 1.09008 * 109.46619 * 299.99393 * 1 2 3
30 30 H 1.00891 * 111.00391 * 151.04489 * 7 5 3
31 31 H 1.08996 * 109.47219 * 184.09098 * 10 8 7
32 32 H 1.09004 * 109.46847 * 304.08702 * 10 8 7
33 33 H 1.08991 * 109.47366 * 64.08805 * 10 8 7
34 34 H 0.97005 * 119.99954 * 180.02562 * 14 13 11
35 35 H 1.08000 * 119.99792 * 180.02562 * 22 20 19
36 36 H 1.07992 * 119.98175 * 180.02562 * 23 22 20
37 37 H 1.08001 * 119.97588 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2094 0.0005
5 6 3.5663 1.2749 -0.0006
6 1 3.9557 0.7809 -0.8908
7 7 3.9829 2.6836 0.0002
8 6 4.0169 3.2231 -1.3658
9 1 3.2141 2.7770 -1.9528
10 6 5.3644 2.8931 -2.0110
11 6 3.8346 4.7184 -1.3199
12 1 4.2348 5.2861 -0.4929
13 6 3.1520 5.3609 -2.3311
14 7 3.0222 6.6694 -2.3085
15 14 2.4116 4.3728 -3.7328
16 1 1.0686 3.8793 -3.3352
17 1 2.2860 5.2360 -4.9345
18 1 3.2916 3.2175 -4.0429
19 6 4.1056 0.5914 1.2296
20 6 4.6951 -0.6571 1.1261
21 9 4.7868 -1.2636 -0.0776
22 6 5.1898 -1.2841 2.2571
23 6 5.0944 -0.6639 3.4887
24 6 4.5060 0.5824 3.5919
25 6 4.0170 1.2134 2.4616
26 17 3.2848 2.7821 2.5913
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8901
30 1 4.8759 2.7964 0.4558
31 1 5.4181 3.3551 -2.9967
32 1 6.1704 3.2770 -1.3855
33 1 5.4648 1.8124 -2.1103
34 1 2.5417 7.1214 -3.0196
35 1 5.6501 -2.2578 2.1769
36 1 5.4807 -1.1531 4.3706
37 1 4.4323 1.0663 4.5547
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602868856.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:49:38
Heat of formation + Delta-G solvation = -112.321157 kcal
Electronic energy + Delta-G solvation = -25144.392402 eV
Core-core repulsion = 21248.187300 eV
Total energy + Delta-G solvation = -3896.205102 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 315.082 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-50.03141 -41.68769 -40.17375 -38.22824 -37.22239 -37.11356 -34.88974 -33.30262
-31.40959 -30.33908 -29.12291 -27.26903 -26.70493 -23.88590 -23.66821 -22.16290
-21.48198 -19.29425 -18.87059 -18.68714 -17.90162 -17.60024 -17.31496 -16.76471
-16.65542 -16.39227 -15.78012 -15.63208 -15.37255 -14.83715 -14.61022 -14.47075
-14.29020 -14.06987 -13.92067 -13.84174 -13.41199 -13.04995 -12.99562 -12.76390
-12.69380 -12.39423 -12.23249 -12.12236 -11.82252 -11.80325 -11.69860 -11.38772
-11.19859 -10.74098 -9.92736 -9.69278 -9.12766 -8.26353 -6.25013 -0.09630
0.00414 1.16641 1.24867 1.29094 1.30251 1.35629 1.63980 2.32092
2.40486 3.00960 3.15782 3.25960 3.40581 3.80768 3.85633 3.95368
4.16129 4.24892 4.26718 4.28071 4.36990 4.41085 4.61452 4.64063
4.71122 4.81021 4.93346 5.02904 5.12262 5.22116 5.31847 5.38835
5.65342 5.71128 5.89969 6.51859 6.57123 6.77627 6.85481 7.37050
8.91290
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.015081 B = 0.005696 C = 0.005442
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1856.209599 B = 4914.719954 C = 5143.905943
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.366 6.366
3 C 0.457 3.543
4 O -0.496 6.496
5 C 0.140 3.860
6 H 0.088 0.912
7 N -0.644 5.644
8 C 0.187 3.813
9 H 0.021 0.979
10 C -0.166 4.166
11 C -0.475 4.475
12 H 0.038 0.962
13 C 0.016 3.984
14 N -0.949 5.949
15 Si 0.928 3.072
16 H -0.287 1.287
17 H -0.281 1.281
18 H -0.244 1.244
19 C -0.142 4.142
20 C 0.117 3.883
21 F -0.136 7.136
22 C -0.142 4.142
23 C -0.054 4.054
24 C -0.122 4.122
25 C -0.014 4.014
26 Cl -0.042 7.042
27 H 0.051 0.949
28 H 0.140 0.860
29 H 0.059 0.941
30 H 0.349 0.651
31 H 0.046 0.954
32 H 0.058 0.942
33 H 0.050 0.950
34 H 0.263 0.737
35 H 0.175 0.825
36 H 0.189 0.811
37 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.749 -22.574 12.179 25.922
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.283 6.283
3 C 0.297 3.703
4 O -0.381 6.381
5 C 0.028 3.972
6 H 0.105 0.895
7 N -0.278 5.278
8 C 0.078 3.922
9 H 0.039 0.961
10 C -0.225 4.225
11 C -0.514 4.514
12 H 0.057 0.943
13 C -0.181 4.181
14 N -0.590 5.590
15 Si 0.753 3.247
16 H -0.213 1.213
17 H -0.207 1.207
18 H -0.167 1.167
19 C -0.145 4.145
20 C 0.097 3.903
21 F -0.115 7.115
22 C -0.160 4.160
23 C -0.071 4.071
24 C -0.141 4.141
25 C -0.042 4.042
26 Cl -0.013 7.013
27 H 0.069 0.931
28 H 0.158 0.842
29 H 0.077 0.923
30 H 0.171 0.829
31 H 0.065 0.935
32 H 0.077 0.923
33 H 0.068 0.932
34 H 0.072 0.928
35 H 0.193 0.807
36 H 0.206 0.794
37 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges 2.746 -21.745 12.166 25.068
hybrid contribution -0.321 0.280 -1.621 1.676
sum 2.425 -21.466 10.545 24.039
Atomic orbital electron populations
1.23504 0.75165 1.05662 1.02025 1.86470 1.24679 1.32689 1.84439
1.23911 0.92149 0.81457 0.72803 1.90723 1.66741 1.37171 1.43416
1.19692 0.87919 0.92262 0.97331 0.89507 1.60532 1.35784 1.11319
1.20188 1.19525 0.93146 0.93962 0.85574 0.96137 1.22534 0.99352
0.99265 1.01393 1.20950 1.33269 0.91009 1.06190 0.94334 1.25650
0.96348 0.95509 1.00576 1.70018 1.44526 1.09432 1.35051 0.86054
0.79358 0.79809 0.79464 1.21318 1.20723 1.16721 1.19370 1.05500
0.95842 0.93741 1.17547 1.00208 0.90466 0.82061 1.91502 1.94149
1.82315 1.43528 1.21601 1.01364 1.02591 0.90475 1.21515 0.94617
0.92702 0.98312 1.21520 0.98683 0.96356 0.97527 1.20980 0.99552
0.89463 0.94164 1.98496 1.80727 1.24075 1.97977 0.93051 0.84218
0.92266 0.82860 0.93493 0.92263 0.93152 0.92815 0.80724 0.79430
0.82065
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.76 10.56 113.37 1.20 1.96 16
2 O -0.37 -12.05 10.48 -51.40 -0.54 -12.59 16
3 C 0.46 18.13 6.39 71.24 0.46 18.58 16
4 O -0.50 -23.82 15.94 21.95 0.35 -23.47 16
5 C 0.14 5.08 2.26 43.42 0.10 5.18 16
6 H 0.09 3.08 6.28 -2.39 -0.01 3.06 16
7 N -0.64 -27.18 3.31 -481.02 -1.59 -28.78 16
8 C 0.19 8.99 1.81 44.17 0.08 9.07 16
9 H 0.02 1.05 4.97 -2.39 -0.01 1.04 16
10 C -0.17 -6.77 9.11 71.98 0.66 -6.12 16
11 C -0.48 -28.13 9.20 25.60 0.24 -27.89 16
12 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16
13 C 0.02 0.97 5.47 84.66 0.46 1.43 16
14 N -0.95 -61.91 13.96 21.45 0.30 -61.61 16
15 Si 0.93 47.63 26.69 68.60 1.83 49.46 16
16 H -0.29 -15.16 7.11 99.48 0.71 -14.45 16
17 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16
18 H -0.24 -11.37 6.84 99.48 0.68 -10.69 16
19 C -0.14 -4.09 4.60 -19.80 -0.09 -4.18 16
20 C 0.12 2.72 7.25 22.37 0.16 2.88 16
21 F -0.14 -3.45 16.27 44.97 0.73 -2.71 16
22 C -0.14 -2.05 10.03 22.32 0.22 -1.83 16
23 C -0.05 -0.61 10.04 22.26 0.22 -0.39 16
24 C -0.12 -2.14 9.83 22.30 0.22 -1.92 16
25 C -0.01 -0.38 6.00 22.32 0.13 -0.25 16
26 Cl -0.04 -1.45 25.35 -2.72 -0.07 -1.52 16
27 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16
28 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16
29 H 0.06 1.54 8.13 -2.38 -0.02 1.52 16
30 H 0.35 13.65 7.47 -89.70 -0.67 12.98 16
31 H 0.05 1.99 7.85 -2.39 -0.02 1.97 16
32 H 0.06 2.28 8.06 -2.38 -0.02 2.26 16
33 H 0.05 1.74 7.48 -2.39 -0.02 1.72 16
34 H 0.26 16.16 8.31 -92.70 -0.77 15.39 16
35 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16
36 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16
37 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16
Total: -1.00 -78.51 332.65 5.49 -73.03
By element:
Atomic # 1 Polarization: 11.24 SS G_CDS: 0.42 Total: 11.66 kcal
Atomic # 6 Polarization: -7.53 SS G_CDS: 4.06 Total: -3.48 kcal
Atomic # 7 Polarization: -89.09 SS G_CDS: -1.30 Total: -90.38 kcal
Atomic # 8 Polarization: -35.87 SS G_CDS: -0.19 Total: -36.05 kcal
Atomic # 9 Polarization: -3.45 SS G_CDS: 0.73 Total: -2.71 kcal
Atomic # 14 Polarization: 47.63 SS G_CDS: 1.83 Total: 49.46 kcal
Atomic # 17 Polarization: -1.45 SS G_CDS: -0.07 Total: -1.52 kcal
Total: -78.51 5.49 -73.03 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602868856.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.295 kcal
(2) G-P(sol) polarization free energy of solvation -78.511 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.806 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.026 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.321 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds