Wall clock time and date at job start Tue Mar 31 2020 11:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00218 * 2 1 4 4 C 1.52998 * 109.47372 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47423 * 67.60148 * 4 3 2 6 6 C 1.46499 * 119.99908 * 278.50296 * 5 4 3 7 7 C 1.50695 * 109.47296 * 269.99446 * 6 5 4 8 8 H 1.08007 * 120.00025 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00053 * 179.97438 * 7 6 5 10 10 N 1.31524 * 119.99969 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00152 * 0.02562 * 9 7 6 12 12 H 1.48491 * 109.47356 * 89.99504 * 11 9 7 13 13 H 1.48502 * 109.47156 * 209.99857 * 11 9 7 14 14 H 1.48506 * 109.46962 * 329.99235 * 11 9 7 15 15 C 1.34778 * 119.99786 * 98.50193 * 5 4 3 16 16 O 1.21561 * 119.99883 * 186.21605 * 15 5 4 17 17 C 1.47852 * 120.00304 * 6.21727 * 15 5 4 18 18 C 1.39569 * 120.12496 * 314.88948 * 17 15 5 19 19 C 1.38175 * 119.85199 * 180.02562 * 18 17 15 20 20 F 1.35102 * 119.94789 * 180.02562 * 19 18 17 21 21 C 1.38575 * 120.10753 * 359.97438 * 19 18 17 22 22 C 1.38410 * 120.25601 * 0.02562 * 21 19 18 23 23 Cl 1.73590 * 119.92836 * 179.97438 * 22 21 19 24 24 C 1.38115 * 120.14450 * 359.97438 * 22 21 19 25 25 H 1.09000 * 109.47287 * 59.99614 * 1 2 3 26 26 H 1.08997 * 109.46822 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46331 * 299.99852 * 1 2 3 28 28 H 1.08999 * 109.47010 * 60.00126 * 3 2 1 29 29 H 1.09001 * 109.47023 * 300.00394 * 3 2 1 30 30 H 1.09005 * 109.46697 * 307.60146 * 4 3 2 31 31 H 1.09005 * 109.47388 * 187.60551 * 4 3 2 32 32 H 1.08995 * 109.47376 * 30.00329 * 6 5 4 33 33 H 1.09007 * 109.47179 * 150.00074 * 6 5 4 34 34 H 0.96994 * 119.99662 * 180.02562 * 10 9 7 35 35 H 1.08001 * 120.07562 * 359.97438 * 18 17 15 36 36 H 1.08006 * 119.87128 * 180.28071 * 21 19 18 37 37 H 1.07995 * 120.05180 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9803 0.6217 -1.2779 6 6 3.9330 -0.8262 -1.4963 7 6 5.2365 -1.4430 -1.0587 8 1 6.0215 -0.8190 -0.6576 9 6 5.4266 -2.8041 -1.1695 10 7 6.5640 -3.3425 -0.7871 11 14 4.0687 -3.8835 -1.8626 12 1 4.2259 -3.9924 -3.3351 13 1 4.1523 -5.2357 -1.2545 14 1 2.7483 -3.2805 -1.5489 15 6 4.4329 1.4358 -2.2520 16 8 4.6951 0.9832 -3.3493 17 6 4.6105 2.8793 -1.9860 18 6 3.6192 3.5946 -1.3126 19 6 3.7908 4.9436 -1.0674 20 9 2.8327 5.6378 -0.4153 21 6 4.9445 5.5853 -1.4885 22 6 5.9305 4.8803 -2.1567 23 17 7.3721 5.6928 -2.6809 24 6 5.7699 3.5316 -2.4073 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8484 0.5307 0.8134 31 1 3.9782 2.1714 0.1354 32 1 3.1155 -1.2546 -0.9166 33 1 3.7727 -1.0289 -2.5553 34 1 6.6978 -4.3000 -0.8654 35 1 2.7196 3.0951 -0.9846 36 1 5.0767 6.6389 -1.2909 37 1 6.5400 2.9830 -2.9291 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610687156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:27 Heat of formation + Delta-G solvation = -87.330433 kcal Electronic energy + Delta-G solvation = -24274.953452 eV Core-core repulsion = 20379.832029 eV Total energy + Delta-G solvation = -3895.121422 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.21001 -40.31187 -38.38511 -37.66979 -36.63105 -35.18089 -32.77350 -31.46776 -30.77236 -29.81953 -27.84568 -26.18835 -24.37640 -23.09216 -22.85397 -21.99635 -19.40291 -17.70854 -17.35479 -16.97106 -16.73545 -16.26047 -16.03947 -15.94809 -15.55066 -15.36501 -14.87917 -14.75015 -14.17405 -14.01943 -13.65292 -13.41083 -13.09859 -12.67933 -12.31953 -12.20554 -12.07408 -11.93290 -11.74866 -11.57899 -11.44486 -11.29898 -11.02392 -10.91460 -10.43510 -10.12966 -9.62340 -9.56876 -9.38707 -9.13417 -8.96695 -8.55076 -7.84118 -6.06294 -4.04934 0.54299 0.74515 1.73940 2.83097 3.31366 3.35166 3.40085 3.43124 3.60414 3.82948 3.96122 4.39378 4.43884 4.50516 4.71630 4.82584 5.04708 5.12732 5.21715 5.28716 5.29007 5.38378 5.42073 5.43442 5.52586 5.61357 5.71807 5.80028 5.95324 6.10309 6.35900 6.84455 6.98964 7.22473 7.23651 7.63769 8.07605 8.45234 8.70599 8.95815 9.53998 11.06896 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013065 B = 0.004704 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.584768 B = 5951.530161 C = 7633.858677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.039 3.961 4 C 0.097 3.903 5 N -0.572 5.572 6 C 0.215 3.785 7 C -0.531 4.531 8 H 0.074 0.926 9 C 0.074 3.926 10 N -0.898 5.898 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.261 1.261 15 C 0.549 3.451 16 O -0.524 6.524 17 C -0.069 4.069 18 C -0.140 4.140 19 C 0.107 3.893 20 F -0.131 7.131 21 C -0.136 4.136 22 C -0.011 4.011 23 Cl -0.052 7.052 24 C -0.069 4.069 25 H 0.038 0.962 26 H 0.085 0.915 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.512 18.047 2.058 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C -0.039 4.039 4 C -0.027 4.027 5 N -0.302 5.302 6 C 0.095 3.905 7 C -0.569 4.569 8 H 0.092 0.908 9 C -0.128 4.128 10 N -0.537 5.537 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.185 1.185 15 C 0.334 3.666 16 O -0.401 6.401 17 C -0.073 4.073 18 C -0.159 4.159 19 C 0.088 3.912 20 F -0.110 7.110 21 C -0.155 4.155 22 C -0.038 4.038 23 Cl -0.023 7.023 24 C -0.089 4.089 25 H 0.056 0.944 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.171 0.829 36 H 0.166 0.834 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.078 17.505 1.478 19.336 hybrid contribution -0.826 -0.145 -0.145 0.851 sum -8.905 17.359 1.333 19.556 Atomic orbital electron populations 1.22744 0.81758 1.02768 0.99443 1.88093 1.19018 1.26673 1.95166 1.23231 0.95032 0.85774 0.99845 1.21866 0.91446 1.00748 0.88665 1.47815 1.60670 1.09075 1.12637 1.19851 0.98540 0.74101 0.97970 1.21322 0.99689 0.93113 1.42799 0.90797 1.24807 0.95501 0.97748 0.94747 1.69898 1.24107 1.11939 1.47723 0.86878 0.83233 0.80088 0.79808 1.20019 1.21152 1.18540 1.17964 0.78911 0.84486 0.85228 1.90799 1.50509 1.75922 1.22833 1.20015 0.94245 0.95414 0.97622 1.21867 1.01488 0.92730 0.99795 1.17215 0.87134 0.89625 0.97247 1.91537 1.61829 1.78967 1.78621 1.21046 0.92482 1.01531 1.00479 1.20455 0.89905 0.92689 1.00764 1.98395 1.35995 1.78898 1.89004 1.21210 0.97749 0.92078 0.97842 0.94384 0.89671 0.94338 0.92262 0.93291 0.88337 0.88870 0.92925 0.94628 0.92596 0.82900 0.83390 0.83048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.37 -5.81 8.91 -35.23 -0.31 -6.12 16 3 C 0.04 0.50 5.25 37.16 0.20 0.70 16 4 C 0.10 1.49 5.34 -4.04 -0.02 1.47 16 5 N -0.57 -11.53 2.46 -176.17 -0.43 -11.97 16 6 C 0.22 5.24 4.15 -5.20 -0.02 5.22 16 7 C -0.53 -15.11 9.94 -34.44 -0.34 -15.46 16 8 H 0.07 2.29 8.06 -52.48 -0.42 1.86 16 9 C 0.07 2.16 5.47 -17.82 -0.10 2.07 16 10 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 11 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 12 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 15 C 0.55 10.96 7.28 -12.33 -0.09 10.87 16 16 O -0.52 -12.56 16.54 5.31 0.09 -12.47 16 17 C -0.07 -1.05 5.12 -104.98 -0.54 -1.59 16 18 C -0.14 -1.71 7.36 -39.11 -0.29 -2.00 16 19 C 0.11 1.18 7.29 -39.48 -0.29 0.89 16 20 F -0.13 -1.39 17.26 2.25 0.04 -1.35 16 21 C -0.14 -1.40 9.80 -39.39 -0.39 -1.78 16 22 C -0.01 -0.13 6.31 -39.56 -0.25 -0.38 16 23 Cl -0.05 -0.56 28.95 -51.86 -1.50 -2.06 16 24 C -0.07 -0.97 9.47 -39.14 -0.37 -1.34 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.60 6.40 -51.93 -0.33 0.26 16 30 H 0.10 1.63 8.13 -51.93 -0.42 1.21 16 31 H 0.09 1.20 4.96 -51.93 -0.26 0.94 16 32 H 0.05 1.27 5.48 -51.93 -0.28 0.98 16 33 H 0.04 0.93 6.77 -51.93 -0.35 0.58 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.15 1.71 3.75 -52.49 -0.20 1.51 16 36 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 37 H 0.15 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 330.63 15.07 4.98 4.98 Total: -1.00 -33.36 330.63 -6.39 -39.75 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -3.97 Total: -1.05 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.38 Total: 0.12 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.34 Total: -38.81 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.23 Total: -18.59 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.36 -6.39 -39.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610687156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.578 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds