Wall clock time and date at job start Tue Mar 31 2020 10:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81395 * 103.00096 * 2 1 4 4 H 1.08997 * 109.47571 * 305.00288 * 3 2 1 5 5 C 1.53006 * 109.47100 * 65.00869 * 3 2 1 6 6 C 1.53000 * 109.46973 * 185.00050 * 3 2 1 7 7 N 1.46498 * 109.47246 * 60.00504 * 6 3 2 8 8 S 1.65604 * 120.00402 * 164.99612 * 7 6 3 9 9 O 1.42100 * 106.40235 * 178.54151 * 8 7 6 10 10 O 1.42099 * 106.40212 * 311.46180 * 8 7 6 11 11 C 1.76196 * 107.21447 * 64.99971 * 8 7 6 12 12 C 1.38657 * 119.88029 * 269.72980 * 11 8 7 13 13 C 1.38611 * 120.50584 * 179.72436 * 12 11 8 14 14 C 1.37644 * 120.24274 * 0.54910 * 13 12 11 15 15 C 1.40692 * 119.74813 * 359.72997 * 14 13 12 16 16 C 1.41394 * 120.24296 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99641 * 150.21592 * 16 15 14 18 18 C 1.39942 * 120.00298 * 330.21042 * 16 15 14 19 19 N 1.30822 * 120.00137 * 161.72520 * 18 16 15 20 20 Si 1.86802 * 119.99842 * 341.73453 * 18 16 15 21 21 H 1.48502 * 109.47309 * 95.40757 * 20 18 16 22 22 H 1.48499 * 109.47048 * 215.40632 * 20 18 16 23 23 H 1.48499 * 109.47216 * 335.40692 * 20 18 16 24 24 C 1.37603 * 119.87656 * 90.00304 * 11 8 7 25 25 H 1.09005 * 109.47020 * 299.99702 * 1 2 3 26 26 H 1.09005 * 109.47316 * 59.99040 * 1 2 3 27 27 H 1.09003 * 109.47815 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47382 * 59.99304 * 5 3 2 29 29 H 1.09007 * 109.46368 * 299.99915 * 5 3 2 30 30 H 1.08999 * 109.47113 * 179.97438 * 5 3 2 31 31 H 1.09008 * 109.47102 * 180.02562 * 6 3 2 32 32 H 1.08996 * 109.47805 * 300.00095 * 6 3 2 33 33 H 0.97000 * 119.99848 * 345.00324 * 7 6 3 34 34 H 1.08003 * 119.74228 * 359.97438 * 12 11 8 35 35 H 1.07999 * 119.87987 * 180.25363 * 13 12 11 36 36 H 1.07999 * 120.12171 * 179.74472 * 14 13 12 37 37 H 0.96994 * 120.00389 * 180.02562 * 19 18 16 38 38 H 1.07997 * 120.12460 * 359.97438 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2542 -0.8417 5 6 1.7429 2.4015 1.3075 6 6 3.7370 1.9411 -0.1257 7 7 4.1958 1.3340 -1.3776 8 16 5.7050 1.6836 -1.9630 9 8 5.8596 0.9234 -3.1536 10 8 5.8336 3.0982 -1.9219 11 6 6.8729 1.0441 -0.8091 12 6 7.3226 1.8414 0.2324 13 6 8.2369 1.3497 1.1509 14 6 8.7174 0.0654 1.0312 15 6 8.2726 -0.7508 -0.0250 16 6 8.7589 -2.0719 -0.1575 17 1 8.1368 -2.8341 -0.6031 18 6 10.0462 -2.3918 0.2885 19 7 10.3728 -3.6403 0.5028 20 14 11.2981 -1.0359 0.5779 21 1 11.2897 -0.6524 2.0125 22 1 12.6503 -1.5226 0.2036 23 1 10.9497 0.1450 -0.2522 24 6 7.3398 -0.2428 -0.9481 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3635 -1.0276 -0.0005 28 1 2.2355 1.9148 2.1492 29 1 0.6636 2.2777 1.3971 30 1 1.9886 3.4635 1.3077 31 1 3.9822 3.0032 -0.1253 32 1 4.2296 1.4545 0.7160 33 1 3.6156 0.7274 -1.8636 34 1 6.9544 2.8519 0.3311 35 1 8.5772 1.9781 1.9606 36 1 9.4328 -0.3144 1.7455 37 1 11.2649 -3.8620 0.8123 38 1 6.9913 -0.8608 -1.7624 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619492943.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:19 Heat of formation + Delta-G solvation = -66.551624 kcal Electronic energy + Delta-G solvation = -21887.700760 eV Core-core repulsion = 18561.737257 eV Total energy + Delta-G solvation = -3325.963503 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -37.91579 -36.88463 -36.37732 -35.39358 -33.77415 -32.46940 -30.72105 -30.15581 -29.06286 -25.84514 -25.37278 -22.46606 -22.15980 -20.89761 -19.18999 -18.04683 -17.15780 -16.73431 -16.34345 -16.27918 -15.34454 -15.00318 -14.86834 -14.62470 -13.90500 -13.89402 -13.72115 -13.32698 -13.16369 -13.05225 -12.87140 -12.67669 -12.24292 -11.87490 -11.79321 -11.76639 -11.69397 -11.60181 -11.46267 -11.16468 -11.02766 -10.79003 -10.36332 -10.07647 -9.98301 -9.76822 -9.41792 -9.16289 -8.27276 -7.87204 -7.85418 -7.07731 -4.62969 0.90385 1.45232 1.91696 2.36547 2.42212 2.99888 3.12214 3.21396 3.43511 3.86309 4.10574 4.31728 4.38763 4.60282 4.87227 4.89002 4.92351 4.97394 5.15748 5.26197 5.34331 5.44788 5.49344 5.69661 5.77445 5.82538 5.95705 6.01100 6.20854 6.46775 6.58497 6.87230 7.05466 7.16423 7.20294 7.39267 7.62913 7.78352 8.19472 8.43573 8.62512 9.94168 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.016751 B = 0.004100 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.156921 B = 6827.823212 C = 7365.875648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.239 6.239 3 C -0.067 4.067 4 H 0.095 0.905 5 C -0.148 4.148 6 C 0.139 3.861 7 N -1.119 6.119 8 S 2.690 3.310 9 O -0.967 6.967 10 O -0.973 6.973 11 C -0.625 4.625 12 C -0.160 4.160 13 C -0.092 4.092 14 C -0.198 4.198 15 C 0.074 3.926 16 C -0.443 4.443 17 H 0.096 0.904 18 C 0.084 3.916 19 N -0.800 5.800 20 Si 0.906 3.094 21 H -0.268 1.268 22 H -0.286 1.286 23 H -0.243 1.243 24 C -0.099 4.099 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.419 0.581 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.288 0.712 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.413 9.038 2.190 18.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.014 6.014 3 C -0.198 4.198 4 H 0.113 0.887 5 C -0.208 4.208 6 C 0.011 3.989 7 N -0.879 5.879 8 S 2.785 3.215 9 O -0.957 6.957 10 O -0.963 6.963 11 C -0.716 4.716 12 C -0.181 4.181 13 C -0.111 4.111 14 C -0.218 4.218 15 C 0.070 3.930 16 C -0.471 4.471 17 H 0.114 0.886 18 C -0.136 4.136 19 N -0.423 5.423 20 Si 0.732 3.268 21 H -0.194 1.194 22 H -0.213 1.213 23 H -0.166 1.166 24 C -0.120 4.120 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.119 0.881 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.255 0.745 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.098 0.902 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.304 8.486 1.529 16.702 hybrid contribution -0.179 0.677 0.715 1.001 sum -14.483 9.163 2.244 17.284 Atomic orbital electron populations 1.23429 0.95031 1.06461 1.04719 1.87346 1.06265 1.10108 1.97682 1.23417 0.99345 0.94851 1.02142 0.88710 1.22059 1.01406 1.01371 0.95935 1.21074 0.91679 0.99252 0.86859 1.55624 1.34500 1.62429 1.35361 1.01670 0.72536 0.73576 0.73705 1.93560 1.85435 1.72383 1.44330 1.93514 1.85963 1.29767 1.87079 1.29929 1.19532 1.05543 1.16629 1.20049 1.03174 0.98101 0.96783 1.20693 0.97169 0.95350 0.97908 1.21295 1.04901 0.95823 0.99736 1.17787 0.92025 0.93015 0.90219 1.19529 0.99738 0.93971 1.33825 0.88636 1.26155 0.99815 0.96542 0.91060 1.69676 1.21827 1.19613 1.31206 0.86378 0.78304 0.82159 0.79958 1.19429 1.21328 1.16636 1.20863 1.00438 0.92465 0.98259 0.90523 0.90642 0.88111 0.90711 0.92168 0.91140 0.88868 0.90220 0.74500 0.87099 0.87927 0.87638 0.90190 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 10.45 101.05 1.06 0.13 16 2 S -0.24 -2.61 20.76 -107.50 -2.23 -4.84 16 3 C -0.07 -0.63 3.00 -26.73 -0.08 -0.71 16 4 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 5 C -0.15 -1.10 9.10 37.16 0.34 -0.76 16 6 C 0.14 1.63 5.67 -4.04 -0.02 1.61 16 7 N -1.12 -15.50 5.84 -10.61 -0.06 -15.56 16 8 S 2.69 48.06 5.74 -107.50 -0.62 47.44 16 9 O -0.97 -19.81 17.27 -57.17 -0.99 -20.79 16 10 O -0.97 -18.61 16.73 -57.17 -0.96 -19.57 16 11 C -0.63 -12.93 5.94 -39.66 -0.24 -13.16 16 12 C -0.16 -3.21 9.53 -39.29 -0.37 -3.58 16 13 C -0.09 -1.91 10.02 -39.66 -0.40 -2.30 16 14 C -0.20 -4.61 7.18 -38.87 -0.28 -4.88 16 15 C 0.07 1.83 5.10 -106.83 -0.55 1.29 16 16 C -0.44 -11.72 9.57 -37.74 -0.36 -12.09 16 17 H 0.10 2.63 8.06 -52.48 -0.42 2.21 16 18 C 0.08 2.16 5.40 -17.34 -0.09 2.06 16 19 N -0.80 -20.80 13.93 55.55 0.77 -20.02 16 20 Si 0.91 20.24 24.52 -169.99 -4.17 16.07 16 21 H -0.27 -5.72 6.71 56.52 0.38 -5.35 16 22 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.24 -5.62 6.86 56.52 0.39 -5.24 16 24 C -0.10 -2.30 9.26 -38.87 -0.36 -2.66 16 25 H 0.08 0.47 7.14 -51.92 -0.37 0.10 16 26 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 27 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.38 6.92 -51.92 -0.36 0.02 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 1.01 7.75 -51.92 -0.40 0.60 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.42 5.31 7.81 -34.47 -0.27 5.04 16 34 H 0.11 1.95 7.59 -52.48 -0.40 1.55 16 35 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 36 H 0.11 2.41 4.73 -52.49 -0.25 2.16 16 37 H 0.29 6.74 8.30 -40.82 -0.34 6.41 16 38 H 0.12 2.69 7.60 -52.49 -0.40 2.29 16 LS Contribution 338.49 15.07 5.10 5.10 Total: -1.00 -30.89 338.49 -9.50 -40.39 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.00 Total: 6.85 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: -1.36 Total: -35.07 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.71 Total: -35.59 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -1.94 Total: -40.36 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.17 Total: 16.07 kcal Atomic # 16 Polarization: 45.45 SS G_CDS: -2.85 Total: 42.60 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.89 -9.50 -40.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619492943.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.157 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds