Wall clock time and date at job start Tue Mar 31 2020 10:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81395 * 103.00096 * 2 1 4 4 H 1.08997 * 109.47571 * 305.00288 * 3 2 1 5 5 C 1.53006 * 109.47100 * 65.00869 * 3 2 1 6 6 C 1.53000 * 109.46973 * 185.00050 * 3 2 1 7 7 N 1.46498 * 109.47246 * 60.00504 * 6 3 2 8 8 S 1.65604 * 120.00402 * 164.99612 * 7 6 3 9 9 O 1.42100 * 106.40235 * 178.54151 * 8 7 6 10 10 O 1.42099 * 106.40212 * 311.46180 * 8 7 6 11 11 C 1.76196 * 107.21447 * 64.99971 * 8 7 6 12 12 C 1.38657 * 119.88029 * 269.72980 * 11 8 7 13 13 C 1.38611 * 120.50584 * 179.72436 * 12 11 8 14 14 C 1.37644 * 120.24274 * 0.54910 * 13 12 11 15 15 C 1.40692 * 119.74813 * 359.72997 * 14 13 12 16 16 C 1.41394 * 120.24296 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99641 * 150.21592 * 16 15 14 18 18 C 1.39942 * 120.00298 * 330.21042 * 16 15 14 19 19 N 1.30822 * 120.00137 * 161.72520 * 18 16 15 20 20 Si 1.86802 * 119.99842 * 341.73453 * 18 16 15 21 21 H 1.48502 * 109.47309 * 95.40757 * 20 18 16 22 22 H 1.48499 * 109.47048 * 215.40632 * 20 18 16 23 23 H 1.48499 * 109.47216 * 335.40692 * 20 18 16 24 24 C 1.37603 * 119.87656 * 90.00304 * 11 8 7 25 25 H 1.09005 * 109.47020 * 299.99702 * 1 2 3 26 26 H 1.09005 * 109.47316 * 59.99040 * 1 2 3 27 27 H 1.09003 * 109.47815 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47382 * 59.99304 * 5 3 2 29 29 H 1.09007 * 109.46368 * 299.99915 * 5 3 2 30 30 H 1.08999 * 109.47113 * 179.97438 * 5 3 2 31 31 H 1.09008 * 109.47102 * 180.02562 * 6 3 2 32 32 H 1.08996 * 109.47805 * 300.00095 * 6 3 2 33 33 H 0.97000 * 119.99848 * 345.00324 * 7 6 3 34 34 H 1.08003 * 119.74228 * 359.97438 * 12 11 8 35 35 H 1.07999 * 119.87987 * 180.25363 * 13 12 11 36 36 H 1.07999 * 120.12171 * 179.74472 * 14 13 12 37 37 H 0.96994 * 120.00389 * 180.02562 * 19 18 16 38 38 H 1.07997 * 120.12460 * 359.97438 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2542 -0.8417 5 6 1.7429 2.4015 1.3075 6 6 3.7370 1.9411 -0.1257 7 7 4.1958 1.3340 -1.3776 8 16 5.7050 1.6836 -1.9630 9 8 5.8596 0.9234 -3.1536 10 8 5.8336 3.0982 -1.9219 11 6 6.8729 1.0441 -0.8091 12 6 7.3226 1.8414 0.2324 13 6 8.2369 1.3497 1.1509 14 6 8.7174 0.0654 1.0312 15 6 8.2726 -0.7508 -0.0250 16 6 8.7589 -2.0719 -0.1575 17 1 8.1368 -2.8341 -0.6031 18 6 10.0462 -2.3918 0.2885 19 7 10.3728 -3.6403 0.5028 20 14 11.2981 -1.0359 0.5779 21 1 11.2897 -0.6524 2.0125 22 1 12.6503 -1.5226 0.2036 23 1 10.9497 0.1450 -0.2522 24 6 7.3398 -0.2428 -0.9481 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3635 -1.0276 -0.0005 28 1 2.2355 1.9148 2.1492 29 1 0.6636 2.2777 1.3971 30 1 1.9886 3.4635 1.3077 31 1 3.9822 3.0032 -0.1253 32 1 4.2296 1.4545 0.7160 33 1 3.6156 0.7274 -1.8636 34 1 6.9544 2.8519 0.3311 35 1 8.5772 1.9781 1.9606 36 1 9.4328 -0.3144 1.7455 37 1 11.2649 -3.8620 0.8123 38 1 6.9913 -0.8608 -1.7624 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619492943.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:19 Heat of formation + Delta-G solvation = -88.149133 kcal Electronic energy + Delta-G solvation = -21888.637299 eV Core-core repulsion = 18561.737257 eV Total energy + Delta-G solvation = -3326.900042 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.68447 -38.34751 -37.41045 -36.93875 -35.64049 -33.34834 -32.54249 -31.88503 -29.65838 -27.25859 -26.66430 -24.11474 -23.05119 -22.65552 -20.67758 -19.69257 -18.50308 -18.08480 -17.69756 -17.41483 -16.98489 -16.64810 -16.19228 -15.69347 -15.54244 -14.84918 -14.69627 -14.56943 -14.45075 -14.20244 -14.06502 -13.85943 -13.56690 -13.38716 -13.27878 -13.20615 -13.09254 -12.88835 -12.78870 -12.54760 -12.45821 -12.07926 -11.98569 -11.79196 -11.56465 -11.09920 -10.80448 -10.40686 -10.00168 -9.68659 -8.97057 -8.68380 -6.60095 -0.55504 0.18177 0.65208 0.73560 1.20254 1.35692 1.42831 1.68867 2.02721 2.08483 2.41405 2.74030 3.29676 3.38160 3.64161 3.91700 4.18070 4.21253 4.33349 4.36086 4.38840 4.42736 4.45758 4.62253 4.75859 4.76620 4.81647 4.89115 4.94559 5.01249 5.06806 5.31259 5.34014 5.43402 5.62512 5.76030 5.99290 6.03078 6.23863 6.58285 6.68912 8.11470 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.016751 B = 0.004100 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.156921 B = 6827.823212 C = 7365.875648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.316 6.316 3 C -0.051 4.051 4 H 0.109 0.891 5 C -0.145 4.145 6 C 0.127 3.873 7 N -1.106 6.106 8 S 2.720 3.280 9 O -0.996 6.996 10 O -0.977 6.977 11 C -0.634 4.634 12 C -0.141 4.141 13 C -0.095 4.095 14 C -0.204 4.204 15 C 0.054 3.946 16 C -0.486 4.486 17 H 0.059 0.941 18 C 0.049 3.951 19 N -0.842 5.842 20 Si 0.957 3.043 21 H -0.246 1.246 22 H -0.274 1.274 23 H -0.256 1.256 24 C -0.124 4.124 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.426 0.574 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.109 0.891 37 H 0.296 0.704 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.751 12.671 3.398 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.092 6.092 3 C -0.181 4.181 4 H 0.127 0.873 5 C -0.205 4.205 6 C 0.000 4.000 7 N -0.869 5.869 8 S 2.811 3.189 9 O -0.986 6.986 10 O -0.967 6.967 11 C -0.722 4.722 12 C -0.161 4.161 13 C -0.114 4.114 14 C -0.224 4.224 15 C 0.051 3.949 16 C -0.515 4.515 17 H 0.077 0.923 18 C -0.166 4.166 19 N -0.468 5.468 20 Si 0.780 3.220 21 H -0.171 1.171 22 H -0.200 1.200 23 H -0.180 1.180 24 C -0.144 4.144 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.122 0.878 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.263 0.737 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.630 12.105 2.763 19.961 hybrid contribution -0.029 -0.274 0.327 0.428 sum -15.659 11.831 3.090 19.867 Atomic orbital electron populations 1.23442 0.91113 1.07179 1.06065 1.87630 1.10773 1.12885 1.97872 1.23383 0.97564 0.93193 1.03937 0.87253 1.22061 1.02213 1.01929 0.94265 1.21391 0.93495 0.99860 0.85246 1.55323 1.32624 1.62657 1.36304 1.00833 0.72638 0.72872 0.72530 1.93521 1.86179 1.73030 1.45866 1.93505 1.86446 1.29760 1.86973 1.30444 1.19955 1.04438 1.17349 1.20648 1.01088 0.99244 0.95122 1.21187 0.96472 0.94673 0.99037 1.21503 1.04932 0.96825 0.99110 1.17936 0.92857 0.92794 0.91306 1.19489 1.00814 0.94481 1.36711 0.92311 1.26806 1.00732 0.98446 0.90633 1.69702 1.22838 1.21008 1.33238 0.85610 0.76603 0.79117 0.80695 1.17110 1.19980 1.17965 1.20877 1.01290 0.93863 0.98403 0.89009 0.89374 0.87762 0.91508 0.90720 0.89516 0.87125 0.90931 0.73666 0.83473 0.83634 0.87331 0.89311 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.45 113.37 1.18 -0.15 16 2 S -0.32 -6.53 20.76 -56.49 -1.17 -7.70 16 3 C -0.05 -0.82 3.00 30.60 0.09 -0.72 16 4 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 5 C -0.15 -1.67 9.10 71.98 0.66 -1.02 16 6 C 0.13 2.64 5.67 86.38 0.49 3.13 16 7 N -1.11 -28.73 5.84 -187.49 -1.09 -29.82 16 8 S 2.72 92.83 5.74 -56.49 -0.32 92.51 16 9 O -1.00 -40.59 17.27 -128.00 -2.21 -42.80 16 10 O -0.98 -34.32 16.73 -128.00 -2.14 -36.46 16 11 C -0.63 -25.41 5.94 22.22 0.13 -25.28 16 12 C -0.14 -5.15 9.53 22.46 0.21 -4.94 16 13 C -0.09 -3.61 10.02 22.22 0.22 -3.39 16 14 C -0.20 -9.29 7.18 22.73 0.16 -9.12 16 15 C 0.05 2.79 5.10 -21.29 -0.11 2.68 16 16 C -0.49 -27.42 9.57 23.46 0.22 -27.20 16 17 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 18 C 0.05 2.63 5.40 85.26 0.46 3.09 16 19 N -0.84 -45.85 13.93 21.83 0.30 -45.55 16 20 Si 0.96 41.74 24.52 68.60 1.68 43.42 16 21 H -0.25 -9.78 6.71 99.48 0.67 -9.11 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.26 -11.54 6.86 99.48 0.68 -10.85 16 24 C -0.12 -5.87 9.26 22.73 0.21 -5.66 16 25 H 0.09 0.85 7.14 -2.39 -0.02 0.83 16 26 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.66 6.92 -2.38 -0.02 0.65 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 1.95 7.75 -2.38 -0.02 1.93 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.43 10.33 7.81 -96.74 -0.76 9.58 16 34 H 0.15 4.37 7.59 -2.91 -0.02 4.35 16 35 H 0.15 4.30 8.06 -2.91 -0.02 4.27 16 36 H 0.11 4.82 4.73 -2.91 -0.01 4.80 16 37 H 0.30 14.39 8.30 -92.71 -0.77 13.62 16 38 H 0.11 5.28 7.60 -2.91 -0.02 5.26 16 Total: -1.00 -69.19 338.49 -0.76 -69.95 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.26 Total: 25.04 kcal Atomic # 6 Polarization: -72.53 SS G_CDS: 3.94 Total: -68.59 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -0.79 Total: -75.37 kcal Atomic # 8 Polarization: -74.91 SS G_CDS: -4.35 Total: -79.26 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.68 Total: 43.42 kcal Atomic # 16 Polarization: 86.31 SS G_CDS: -1.50 Total: 84.81 kcal Total: -69.19 -0.76 -69.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619492943.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.200 kcal (2) G-P(sol) polarization free energy of solvation -69.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds