Wall clock time and date at job start Tue Mar 31 2020 10:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81398 * 102.99850 * 2 1 4 4 H 1.09000 * 109.47472 * 55.00299 * 3 2 1 5 5 C 1.52995 * 109.47278 * 294.99414 * 3 2 1 6 6 C 1.53007 * 109.46903 * 174.99864 * 3 2 1 7 7 N 1.46499 * 109.46835 * 299.99961 * 6 3 2 8 8 S 1.65600 * 119.99999 * 165.00471 * 7 6 3 9 9 O 1.42107 * 106.39926 * 311.45676 * 8 7 6 10 10 O 1.42092 * 106.40446 * 178.53707 * 8 7 6 11 11 C 1.76205 * 107.22194 * 64.99559 * 8 7 6 12 12 C 1.38661 * 119.87334 * 269.73299 * 11 8 7 13 13 C 1.38613 * 120.49578 * 179.71738 * 12 11 8 14 14 C 1.37633 * 120.25099 * 0.55558 * 13 12 11 15 15 C 1.40703 * 119.74279 * 359.71984 * 14 13 12 16 16 C 1.41399 * 120.24468 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00076 * 204.36483 * 16 15 14 18 18 C 1.39953 * 119.99881 * 24.36256 * 16 15 14 19 19 N 1.30827 * 119.99809 * 17.87269 * 18 16 15 20 20 Si 1.86803 * 119.99871 * 197.87671 * 18 16 15 21 21 H 1.48499 * 109.46873 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47159 * 119.99956 * 20 18 16 23 23 H 1.48498 * 109.46534 * 240.00127 * 20 18 16 24 24 C 1.37590 * 119.87493 * 89.99803 * 11 8 7 25 25 H 1.08995 * 109.47635 * 300.00437 * 1 2 3 26 26 H 1.09004 * 109.46748 * 60.00021 * 1 2 3 27 27 H 1.09001 * 109.47354 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47592 * 300.00811 * 5 3 2 29 29 H 1.09007 * 109.46804 * 60.00623 * 5 3 2 30 30 H 1.09001 * 109.47524 * 180.02562 * 5 3 2 31 31 H 1.09001 * 109.46889 * 180.02562 * 6 3 2 32 32 H 1.08992 * 109.46924 * 59.99677 * 6 3 2 33 33 H 0.96996 * 120.00325 * 344.99459 * 7 6 3 34 34 H 1.07999 * 119.75189 * 359.97438 * 12 11 8 35 35 H 1.08002 * 119.87279 * 180.25460 * 13 12 11 36 36 H 1.07997 * 120.13054 * 179.70211 * 14 13 12 37 37 H 0.96999 * 119.99734 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.13079 * 359.97438 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7295 2.2542 0.8418 5 6 1.7429 2.4015 -1.3074 6 6 3.7370 1.9412 0.1258 7 7 4.1958 1.3340 1.3776 8 16 5.8081 1.0377 1.6120 9 8 6.2685 0.3754 0.4420 10 8 5.9294 0.4863 2.9159 11 6 6.6247 2.5986 1.6540 12 6 7.1128 3.1545 0.4812 13 6 7.7521 4.3843 0.4985 14 6 7.9191 5.0623 1.6845 15 6 7.4329 4.5051 2.8815 16 6 7.5983 5.1928 4.1059 17 1 7.6005 4.6452 5.0367 18 6 7.7592 6.5830 4.1115 19 7 7.4157 7.2854 3.0626 20 14 8.4644 7.4356 5.6166 21 1 8.7700 6.4245 6.6604 22 1 9.7096 8.1524 5.2415 23 1 7.4736 8.4075 6.1445 24 6 6.7803 3.2586 2.8511 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 2.2354 1.9149 -2.1492 29 1 0.6636 2.2779 -1.3969 30 1 1.9884 3.4635 -1.3076 31 1 3.9821 3.0033 0.1262 32 1 4.2295 1.4545 -0.7160 33 1 3.5552 1.1057 2.0692 34 1 6.9904 2.6272 -0.4534 35 1 8.1247 4.8098 -0.4216 36 1 8.4217 6.0181 1.6964 37 1 7.5269 8.2490 3.0666 38 1 6.4028 2.8221 3.7640 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619492944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:22 Heat of formation + Delta-G solvation = -69.484682 kcal Electronic energy + Delta-G solvation = -21769.685975 eV Core-core repulsion = 18443.595284 eV Total energy + Delta-G solvation = -3326.090690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -37.65123 -36.75644 -36.27376 -35.25048 -33.86080 -32.37780 -30.08886 -29.79418 -29.03169 -25.76465 -25.48678 -22.22420 -21.83004 -20.98386 -19.03424 -17.97103 -17.12069 -16.58596 -16.13515 -15.85694 -15.22836 -15.12816 -14.72250 -14.50807 -13.97347 -13.75329 -13.45510 -13.36545 -13.08606 -12.93689 -12.64155 -12.58495 -11.91937 -11.73040 -11.68498 -11.58126 -11.46428 -11.38689 -11.37575 -11.10096 -10.98632 -10.90382 -10.60840 -10.02060 -9.77517 -9.64994 -9.37142 -9.14044 -8.05319 -7.80704 -7.71901 -6.94824 -4.54984 1.05543 1.50259 2.19045 2.41751 2.61233 2.99242 3.03186 3.06314 3.59022 3.81787 4.26351 4.40725 4.48817 4.68315 4.90364 4.92743 4.97052 5.12664 5.31791 5.39646 5.43745 5.49118 5.63870 5.70847 5.84940 6.01489 6.07883 6.17590 6.64863 6.75055 6.84150 7.01826 7.19378 7.25418 7.37774 7.71641 7.80117 7.93150 8.39291 8.65506 8.70576 10.00600 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.003561 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.387861 B = 7860.500882 C = 8199.419335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.244 6.244 3 C -0.065 4.065 4 H 0.095 0.905 5 C -0.148 4.148 6 C 0.140 3.860 7 N -1.118 6.118 8 S 2.691 3.309 9 O -0.973 6.973 10 O -0.971 6.971 11 C -0.632 4.632 12 C -0.151 4.151 13 C -0.120 4.120 14 C -0.119 4.119 15 C 0.091 3.909 16 C -0.460 4.460 17 H 0.083 0.917 18 C 0.075 3.925 19 N -0.794 5.794 20 Si 0.911 3.089 21 H -0.258 1.258 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.123 4.123 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.416 0.584 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.283 0.717 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.618 -4.792 -6.156 13.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S -0.018 6.018 3 C -0.195 4.195 4 H 0.113 0.887 5 C -0.208 4.208 6 C 0.012 3.988 7 N -0.876 5.876 8 S 2.786 3.214 9 O -0.963 6.963 10 O -0.962 6.962 11 C -0.724 4.724 12 C -0.172 4.172 13 C -0.140 4.140 14 C -0.139 4.139 15 C 0.088 3.912 16 C -0.489 4.489 17 H 0.101 0.899 18 C -0.143 4.143 19 N -0.419 5.419 20 Si 0.735 3.265 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.145 4.145 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.117 0.883 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.251 0.749 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.093 0.907 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.471 -6.235 -6.288 13.714 hybrid contribution -0.856 2.339 0.911 2.653 sum -11.328 -3.896 -5.376 13.130 Atomic orbital electron populations 1.23422 0.95200 1.06296 1.04760 1.87248 1.06029 1.10744 1.97820 1.23442 0.99424 0.94418 1.02206 0.88659 1.22054 1.01312 1.01566 0.95834 1.21064 0.91691 0.99267 0.86750 1.55543 1.26843 1.79685 1.25571 1.01623 0.72013 0.74765 0.72980 1.93513 1.79668 1.72911 1.50239 1.93536 1.85277 1.77705 1.39672 1.29782 1.19320 1.22666 1.00651 1.20093 1.05229 0.97017 0.94831 1.20809 1.00663 0.95099 0.97410 1.21637 0.99894 1.00392 0.91977 1.17693 0.89106 0.90808 0.93617 1.19664 1.43486 0.91752 0.94023 0.89855 1.25938 0.92644 0.97907 0.97800 1.69788 1.33852 1.08308 1.29994 0.86208 0.79333 0.79456 0.81513 1.18184 1.19587 1.19876 1.20788 1.01903 0.97426 0.94369 0.90607 0.90588 0.88263 0.90845 0.92215 0.90965 0.89635 0.89458 0.74920 0.87565 0.88392 0.85762 0.90653 0.87034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 10.45 101.05 1.06 0.09 16 2 S -0.24 -2.75 21.27 -107.50 -2.29 -5.03 16 3 C -0.06 -0.67 2.90 -26.73 -0.08 -0.74 16 4 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 5 C -0.15 -1.23 9.10 37.16 0.34 -0.89 16 6 C 0.14 1.80 5.67 -4.04 -0.02 1.77 16 7 N -1.12 -16.52 5.57 -10.61 -0.06 -16.58 16 8 S 2.69 51.14 5.74 -107.50 -0.62 50.52 16 9 O -0.97 -20.16 16.73 -57.17 -0.96 -21.12 16 10 O -0.97 -20.80 17.26 -57.17 -0.99 -21.79 16 11 C -0.63 -13.69 5.94 -39.66 -0.24 -13.93 16 12 C -0.15 -3.21 9.53 -39.29 -0.37 -3.59 16 13 C -0.12 -2.66 10.02 -39.66 -0.40 -3.06 16 14 C -0.12 -2.93 8.70 -38.87 -0.34 -3.27 16 15 C 0.09 2.34 5.58 -106.82 -0.60 1.74 16 16 C -0.46 -11.73 9.06 -37.74 -0.34 -12.07 16 17 H 0.08 2.06 7.91 -52.49 -0.42 1.64 16 18 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 19 N -0.79 -19.35 10.95 55.55 0.61 -18.74 16 20 Si 0.91 17.91 29.60 -169.99 -5.03 12.87 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 24 C -0.12 -2.95 9.26 -38.88 -0.36 -3.31 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.49 7.14 -51.92 -0.37 0.12 16 27 H 0.10 0.67 8.14 -51.92 -0.42 0.24 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.42 6.92 -51.92 -0.36 0.06 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.16 7.75 -51.93 -0.40 0.75 16 33 H 0.42 5.42 8.52 -34.47 -0.29 5.13 16 34 H 0.11 2.03 7.59 -52.49 -0.40 1.64 16 35 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 37 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 38 H 0.11 2.57 7.60 -52.49 -0.40 2.17 16 LS Contribution 344.59 15.07 5.19 5.19 Total: -1.00 -30.55 344.59 -10.63 -41.18 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.06 Total: 9.05 kcal Atomic # 6 Polarization: -34.12 SS G_CDS: -1.44 Total: -35.55 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.55 Total: -35.33 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -1.94 Total: -42.91 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 48.39 SS G_CDS: -2.90 Total: 45.49 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.55 -10.63 -41.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619492944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.303 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds