Wall clock time and date at job start Tue Mar 31 2020 10:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81398 * 102.99850 * 2 1 4 4 H 1.09000 * 109.47472 * 55.00299 * 3 2 1 5 5 C 1.52995 * 109.47278 * 294.99414 * 3 2 1 6 6 C 1.53007 * 109.46903 * 174.99864 * 3 2 1 7 7 N 1.46499 * 109.46835 * 299.99961 * 6 3 2 8 8 S 1.65600 * 119.99999 * 165.00471 * 7 6 3 9 9 O 1.42107 * 106.39926 * 311.45676 * 8 7 6 10 10 O 1.42092 * 106.40446 * 178.53707 * 8 7 6 11 11 C 1.76205 * 107.22194 * 64.99559 * 8 7 6 12 12 C 1.38661 * 119.87334 * 269.73299 * 11 8 7 13 13 C 1.38613 * 120.49578 * 179.71738 * 12 11 8 14 14 C 1.37633 * 120.25099 * 0.55558 * 13 12 11 15 15 C 1.40703 * 119.74279 * 359.71984 * 14 13 12 16 16 C 1.41399 * 120.24468 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00076 * 204.36483 * 16 15 14 18 18 C 1.39953 * 119.99881 * 24.36256 * 16 15 14 19 19 N 1.30827 * 119.99809 * 17.87269 * 18 16 15 20 20 Si 1.86803 * 119.99871 * 197.87671 * 18 16 15 21 21 H 1.48499 * 109.46873 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47159 * 119.99956 * 20 18 16 23 23 H 1.48498 * 109.46534 * 240.00127 * 20 18 16 24 24 C 1.37590 * 119.87493 * 89.99803 * 11 8 7 25 25 H 1.08995 * 109.47635 * 300.00437 * 1 2 3 26 26 H 1.09004 * 109.46748 * 60.00021 * 1 2 3 27 27 H 1.09001 * 109.47354 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47592 * 300.00811 * 5 3 2 29 29 H 1.09007 * 109.46804 * 60.00623 * 5 3 2 30 30 H 1.09001 * 109.47524 * 180.02562 * 5 3 2 31 31 H 1.09001 * 109.46889 * 180.02562 * 6 3 2 32 32 H 1.08992 * 109.46924 * 59.99677 * 6 3 2 33 33 H 0.96996 * 120.00325 * 344.99459 * 7 6 3 34 34 H 1.07999 * 119.75189 * 359.97438 * 12 11 8 35 35 H 1.08002 * 119.87279 * 180.25460 * 13 12 11 36 36 H 1.07997 * 120.13054 * 179.70211 * 14 13 12 37 37 H 0.96999 * 119.99734 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.13079 * 359.97438 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7295 2.2542 0.8418 5 6 1.7429 2.4015 -1.3074 6 6 3.7370 1.9412 0.1258 7 7 4.1958 1.3340 1.3776 8 16 5.8081 1.0377 1.6120 9 8 6.2685 0.3754 0.4420 10 8 5.9294 0.4863 2.9159 11 6 6.6247 2.5986 1.6540 12 6 7.1128 3.1545 0.4812 13 6 7.7521 4.3843 0.4985 14 6 7.9191 5.0623 1.6845 15 6 7.4329 4.5051 2.8815 16 6 7.5983 5.1928 4.1059 17 1 7.6005 4.6452 5.0367 18 6 7.7592 6.5830 4.1115 19 7 7.4157 7.2854 3.0626 20 14 8.4644 7.4356 5.6166 21 1 8.7700 6.4245 6.6604 22 1 9.7096 8.1524 5.2415 23 1 7.4736 8.4075 6.1445 24 6 6.7803 3.2586 2.8511 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 2.2354 1.9149 -2.1492 29 1 0.6636 2.2779 -1.3969 30 1 1.9884 3.4635 -1.3076 31 1 3.9821 3.0033 0.1262 32 1 4.2295 1.4545 -0.7160 33 1 3.5552 1.1057 2.0692 34 1 6.9904 2.6272 -0.4534 35 1 8.1247 4.8098 -0.4216 36 1 8.4217 6.0181 1.6964 37 1 7.5269 8.2490 3.0666 38 1 6.4028 2.8221 3.7640 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619492944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:21 Heat of formation + Delta-G solvation = -89.011581 kcal Electronic energy + Delta-G solvation = -21770.532725 eV Core-core repulsion = 18443.595284 eV Total energy + Delta-G solvation = -3326.937440 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.44706 -38.30729 -37.40771 -36.89840 -35.66788 -33.34060 -31.91089 -31.58251 -29.64930 -27.35108 -26.67546 -23.69097 -23.05772 -22.74283 -20.58368 -19.63056 -18.50283 -17.77457 -17.71447 -17.18090 -16.75443 -16.58543 -16.17082 -15.79808 -15.23288 -15.06013 -14.70414 -14.42749 -14.30172 -14.05297 -13.83901 -13.68424 -13.33325 -13.30296 -13.16419 -13.07713 -13.03697 -12.81881 -12.77351 -12.60398 -12.44207 -12.20842 -12.05894 -11.55091 -11.37054 -11.14587 -10.78638 -10.40704 -9.85156 -9.55931 -8.73662 -8.65826 -6.45130 -0.49355 0.40352 0.73833 0.84324 1.37760 1.44613 1.52499 1.69908 2.14778 2.17904 2.55853 2.79354 3.43067 3.51868 3.63745 3.90180 4.21647 4.31764 4.37099 4.40185 4.44658 4.46832 4.58566 4.75335 4.84542 4.86074 4.90939 4.93712 4.99869 5.07421 5.20758 5.29113 5.41089 5.57060 5.89177 5.94261 6.07399 6.11299 6.52873 6.79655 6.84824 8.24324 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.003561 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.387861 B = 7860.500882 C = 8199.419335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.307 6.307 3 C -0.051 4.051 4 H 0.105 0.895 5 C -0.145 4.145 6 C 0.130 3.870 7 N -1.104 6.104 8 S 2.720 3.280 9 O -0.986 6.986 10 O -0.997 6.997 11 C -0.636 4.636 12 C -0.148 4.148 13 C -0.121 4.121 14 C -0.141 4.141 15 C 0.063 3.937 16 C -0.499 4.499 17 H 0.077 0.923 18 C 0.039 3.961 19 N -0.819 5.819 20 Si 0.982 3.018 21 H -0.261 1.261 22 H -0.262 1.262 23 H -0.263 1.263 24 C -0.146 4.146 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.426 0.574 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.292 0.708 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.940 -4.453 -6.934 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.082 6.082 3 C -0.182 4.182 4 H 0.124 0.876 5 C -0.205 4.205 6 C 0.003 3.997 7 N -0.866 5.866 8 S 2.812 3.188 9 O -0.976 6.976 10 O -0.987 6.987 11 C -0.725 4.725 12 C -0.168 4.168 13 C -0.140 4.140 14 C -0.161 4.161 15 C 0.060 3.940 16 C -0.528 4.528 17 H 0.095 0.905 18 C -0.176 4.176 19 N -0.445 5.445 20 Si 0.802 3.198 21 H -0.185 1.185 22 H -0.187 1.187 23 H -0.188 1.188 24 C -0.167 4.167 25 H 0.103 0.897 26 H 0.109 0.891 27 H 0.126 0.874 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.263 0.737 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.789 -5.879 -7.077 14.954 hybrid contribution -0.557 2.144 1.035 2.445 sum -12.346 -3.735 -6.042 14.243 Atomic orbital electron populations 1.23454 0.91355 1.07270 1.05947 1.87450 1.10396 1.12358 1.97996 1.23380 0.97367 0.93603 1.03805 0.87643 1.22055 1.02307 1.01666 0.94427 1.21315 0.93769 0.99219 0.85372 1.55184 1.25117 1.79556 1.26753 1.00737 0.72618 0.73426 0.71977 1.93494 1.80739 1.72752 1.50614 1.93495 1.86182 1.77934 1.41096 1.30205 1.18856 1.23486 0.99980 1.20477 1.03869 0.96747 0.95742 1.21145 0.99917 0.95177 0.97727 1.21649 1.01048 1.00556 0.92798 1.18033 0.89849 0.91798 0.94310 1.19879 1.45904 0.93042 0.93946 0.90509 1.26706 0.92249 0.97861 1.00816 1.69809 1.33991 1.09055 1.31625 0.85159 0.78829 0.78172 0.77620 1.18512 1.18691 1.18782 1.20850 1.02892 0.97650 0.95298 0.89659 0.89106 0.87420 0.91101 0.90540 0.90232 0.89201 0.89765 0.73701 0.84932 0.85388 0.86852 0.89711 0.87352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.45 113.37 1.19 -0.22 16 2 S -0.31 -6.43 21.27 -56.49 -1.20 -7.63 16 3 C -0.05 -0.95 2.90 30.59 0.09 -0.86 16 4 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 5 C -0.15 -2.04 9.10 71.98 0.66 -1.38 16 6 C 0.13 3.14 5.67 86.38 0.49 3.63 16 7 N -1.10 -31.50 5.57 -187.49 -1.04 -32.54 16 8 S 2.72 101.86 5.74 -56.49 -0.32 101.54 16 9 O -0.99 -39.74 16.73 -128.00 -2.14 -41.88 16 10 O -1.00 -42.74 17.26 -128.00 -2.21 -44.95 16 11 C -0.64 -27.45 5.94 22.22 0.13 -27.32 16 12 C -0.15 -6.13 9.53 22.46 0.21 -5.91 16 13 C -0.12 -5.24 10.02 22.22 0.22 -5.01 16 14 C -0.14 -7.05 8.70 22.73 0.20 -6.85 16 15 C 0.06 3.35 5.58 -21.29 -0.12 3.23 16 16 C -0.50 -26.32 9.06 23.46 0.21 -26.10 16 17 H 0.08 3.98 7.91 -2.92 -0.02 3.95 16 18 C 0.04 1.91 5.14 85.26 0.44 2.35 16 19 N -0.82 -40.37 10.95 21.83 0.24 -40.13 16 20 Si 0.98 36.84 29.60 68.60 2.03 38.87 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 22 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 23 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 24 C -0.15 -7.15 9.26 22.73 0.21 -6.94 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.09 0.88 7.14 -2.39 -0.02 0.87 16 27 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 0.83 6.92 -2.38 -0.02 0.82 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.08 2.11 7.75 -2.39 -0.02 2.09 16 33 H 0.43 10.68 8.52 -96.75 -0.82 9.85 16 34 H 0.13 4.76 7.59 -2.91 -0.02 4.74 16 35 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 36 H 0.11 5.83 6.16 -2.91 -0.02 5.81 16 37 H 0.29 12.85 8.30 -92.71 -0.77 12.08 16 38 H 0.11 5.21 7.60 -2.91 -0.02 5.19 16 Total: -1.00 -66.22 344.59 -0.48 -66.69 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.25 Total: 31.43 kcal Atomic # 6 Polarization: -75.33 SS G_CDS: 3.93 Total: -71.40 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -0.81 Total: -72.67 kcal Atomic # 8 Polarization: -82.48 SS G_CDS: -4.35 Total: -86.83 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Atomic # 16 Polarization: 95.43 SS G_CDS: -1.53 Total: 93.91 kcal Total: -66.22 -0.48 -66.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619492944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.317 kcal (2) G-P(sol) polarization free energy of solvation -66.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds