Wall clock time and date at job start Tue Mar 31 2020 11:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 113.99752 * 2 1 4 4 C 1.53002 * 109.46762 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47118 * 64.99994 * 4 3 2 6 6 C 1.37098 * 120.00208 * 269.99737 * 5 4 3 7 7 H 1.08004 * 119.99902 * 145.15239 * 6 5 4 8 8 C 1.38944 * 119.99604 * 325.16180 * 6 5 4 9 9 N 1.31410 * 120.00106 * 337.40379 * 8 6 5 10 10 Si 1.86805 * 119.99988 * 157.41591 * 8 6 5 11 11 H 1.48501 * 109.46924 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47103 * 119.99129 * 10 8 6 13 13 H 1.48493 * 109.47171 * 239.99409 * 10 8 6 14 14 C 1.34779 * 120.00212 * 89.99640 * 5 4 3 15 15 O 1.21292 * 119.99808 * 4.90289 * 14 5 4 16 16 C 1.50696 * 120.00269 * 184.90084 * 14 5 4 17 17 S 1.81406 * 109.47188 * 177.23083 * 16 14 5 18 18 C 1.81404 * 102.99962 * 179.97438 * 17 16 14 19 19 C 1.50692 * 109.46852 * 179.97438 * 18 17 16 20 20 C 1.33388 * 125.20522 * 90.00524 * 19 18 17 21 21 C 1.38422 * 114.92615 * 180.02562 * 20 19 18 22 22 C 1.33393 * 114.91676 * 0.24780 * 21 20 19 23 23 S 1.75880 * 109.59627 * 359.63217 * 22 21 20 24 24 H 1.09002 * 109.47074 * 60.00232 * 1 2 3 25 25 H 1.09002 * 109.46957 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47366 * 300.00178 * 1 2 3 27 27 H 1.09002 * 109.47441 * 59.99886 * 3 2 1 28 28 H 1.08999 * 109.47036 * 299.99627 * 3 2 1 29 29 H 1.08993 * 109.47569 * 305.00199 * 4 3 2 30 30 H 1.09001 * 109.47336 * 184.99658 * 4 3 2 31 31 H 0.97004 * 120.00239 * 184.98665 * 9 8 6 32 32 H 1.08996 * 109.47495 * 57.22787 * 16 14 5 33 33 H 1.09000 * 109.46984 * 297.22797 * 16 14 5 34 34 H 1.08997 * 109.46788 * 59.99700 * 18 17 16 35 35 H 1.09000 * 109.47016 * 300.00333 * 18 17 16 36 36 H 1.08005 * 122.53863 * 0.04882 * 20 19 18 37 37 H 1.08002 * 122.54462 * 179.97438 * 21 20 19 38 38 H 1.08002 * 125.20033 * 179.75846 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0980 -0.7992 -1.3346 7 1 3.8653 -1.3062 -2.2594 8 6 4.5201 -1.5281 -0.2296 9 7 5.2120 -0.9400 0.7203 10 14 4.1043 -3.3443 -0.0944 11 1 3.3226 -3.7631 -1.2856 12 1 5.3591 -4.1353 -0.0222 13 1 3.3005 -3.5782 1.1320 14 6 4.2633 1.3328 -2.3201 15 8 4.2422 2.5415 -2.2210 16 6 4.6101 0.6908 -3.6386 17 16 4.8619 1.9791 -4.8907 18 6 5.2640 1.0265 -6.3812 19 6 5.5044 1.9705 -7.5309 20 6 6.6853 2.4961 -7.8603 21 6 6.6627 3.3399 -8.9575 22 6 5.4624 3.5035 -9.5159 23 16 4.2707 2.5485 -8.6435 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8508 0.5685 0.8426 30 1 3.9785 2.1765 0.0902 31 1 5.5685 -1.4630 1.4554 32 1 3.7958 0.0364 -3.9494 33 1 5.5240 0.1069 -3.5292 34 1 4.4336 0.3634 -6.6235 35 1 6.1616 0.4344 -6.2028 36 1 7.5907 2.2795 -7.3127 37 1 7.5488 3.8320 -9.3303 38 1 5.2545 4.1256 -10.3740 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701272431.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:45 Heat of formation + Delta-G solvation = -52.549883 kcal Electronic energy + Delta-G solvation = -21287.861946 eV Core-core repulsion = 17962.505604 eV Total energy + Delta-G solvation = -3325.356342 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.52205 -38.76991 -38.55422 -36.61537 -33.54225 -32.98395 -31.98049 -29.71008 -27.65097 -27.28082 -26.47617 -24.11485 -23.61359 -21.08880 -20.18627 -19.07094 -18.15773 -17.95468 -17.18929 -17.05968 -16.91953 -16.38379 -16.27624 -16.12625 -15.90248 -15.45073 -14.86228 -14.72094 -14.53197 -13.83661 -13.67985 -13.60958 -13.41432 -13.23855 -13.11712 -12.88904 -12.79936 -12.64338 -12.50841 -12.47912 -12.04609 -11.81804 -11.66791 -11.10090 -10.96685 -10.55765 -10.43970 -9.54914 -9.48077 -9.39527 -8.63688 -8.27191 -5.97225 -0.20224 0.65687 0.81090 1.09828 1.41058 1.51303 1.60931 1.62368 1.93091 1.98115 2.34593 2.89927 3.01058 3.18040 3.66007 4.01661 4.11306 4.20870 4.26163 4.27638 4.41645 4.44720 4.52104 4.52963 4.60907 4.61385 4.69091 4.73700 4.78651 4.86947 5.19834 5.34639 5.36840 5.53026 5.56654 5.96443 6.40457 6.41000 7.14954 7.53754 7.96544 8.76608 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.018239 B = 0.003191 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.831701 B = 8773.925683 C = 9309.321356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.393 6.393 3 C 0.066 3.934 4 C 0.107 3.893 5 N -0.432 5.432 6 C -0.341 4.341 7 H 0.095 0.905 8 C 0.016 3.984 9 N -0.892 5.892 10 Si 0.979 3.021 11 H -0.259 1.259 12 H -0.280 1.280 13 H -0.283 1.283 14 C 0.466 3.534 15 O -0.622 6.622 16 C -0.081 4.081 17 S -0.233 6.233 18 C -0.022 4.022 19 C -0.181 4.181 20 C -0.124 4.124 21 C -0.143 4.143 22 C -0.205 4.205 23 S 0.094 5.906 24 H 0.039 0.961 25 H 0.094 0.906 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.030 0.970 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.272 0.728 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.150 0.850 37 H 0.166 0.834 38 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.162 1.454 -14.592 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C -0.011 4.011 4 C -0.017 4.017 5 N -0.149 5.149 6 C -0.468 4.468 7 H 0.113 0.887 8 C -0.187 4.187 9 N -0.530 5.530 10 Si 0.804 3.196 11 H -0.183 1.183 12 H -0.206 1.206 13 H -0.209 1.209 14 C 0.254 3.746 15 O -0.510 6.510 16 C -0.232 4.232 17 S -0.005 6.005 18 C -0.171 4.171 19 C -0.299 4.299 20 C -0.158 4.158 21 C -0.173 4.173 22 C -0.341 4.341 23 S 0.357 5.643 24 H 0.058 0.942 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.167 0.833 37 H 0.183 0.817 38 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -3.700 2.650 -14.298 15.005 hybrid contribution 1.256 -1.592 0.643 2.127 sum -2.444 1.058 -13.655 13.913 Atomic orbital electron populations 1.22894 0.80756 1.03334 1.00246 1.88079 1.20317 1.27544 1.95283 1.22784 0.94252 0.84748 0.99364 1.21507 0.91700 0.98027 0.90451 1.43476 1.55638 1.06563 1.09255 1.19577 1.46165 0.80583 1.00508 0.88733 1.25965 0.93673 1.03697 0.95390 1.69922 1.31233 1.38439 1.13383 0.85095 0.77932 0.77909 0.78651 1.18283 1.20610 1.20912 1.20148 0.80832 0.86552 0.87021 1.90530 1.59283 1.15403 1.85826 1.23137 1.06283 0.99577 0.94179 1.87644 1.92638 1.15647 1.04540 1.21825 1.06221 0.97761 0.91261 1.23766 0.97500 1.06961 1.01695 1.20471 0.98256 0.98451 0.98661 1.20430 0.99369 1.00796 0.96735 1.26033 0.95652 1.06234 1.06190 1.84359 1.12653 1.43432 1.23866 0.94186 0.88798 0.93078 0.91513 0.95185 0.88072 0.92269 0.91845 0.87500 0.87402 0.88305 0.87062 0.83281 0.81675 0.79133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 11.01 113.37 1.25 1.97 16 2 O -0.39 -16.39 10.18 -148.98 -1.52 -17.91 16 3 C 0.07 2.75 6.28 71.98 0.45 3.21 16 4 C 0.11 5.25 5.47 86.38 0.47 5.72 16 5 N -0.43 -21.95 2.52 -635.54 -1.60 -23.55 16 6 C -0.34 -17.05 8.23 84.04 0.69 -16.35 16 7 H 0.10 4.47 6.94 -2.91 -0.02 4.45 16 8 C 0.02 0.79 4.95 84.93 0.42 1.21 16 9 N -0.89 -47.22 11.34 21.66 0.25 -46.97 16 10 Si 0.98 39.97 29.61 68.60 2.03 42.00 16 11 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 12 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 13 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 14 C 0.47 23.25 7.64 87.66 0.67 23.92 16 15 O -0.62 -34.23 15.42 -3.07 -0.05 -34.28 16 16 C -0.08 -3.27 5.06 71.23 0.36 -2.91 16 17 S -0.23 -8.63 20.86 -56.49 -1.18 -9.81 16 18 C -0.02 -0.57 6.43 71.23 0.46 -0.11 16 19 C -0.18 -4.49 5.77 24.59 0.14 -4.35 16 20 C -0.12 -2.76 10.05 21.22 0.21 -2.55 16 21 C -0.14 -2.61 10.18 21.22 0.22 -2.40 16 22 C -0.20 -3.60 11.23 66.72 0.75 -2.85 16 23 S 0.09 2.07 23.33 -56.49 -1.32 0.75 16 24 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 5.33 5.37 -2.39 -0.01 5.31 16 30 H 0.06 2.98 7.36 -2.39 -0.02 2.96 16 31 H 0.27 13.56 8.32 -92.71 -0.77 12.79 16 32 H 0.11 3.96 7.66 -2.39 -0.02 3.95 16 33 H 0.11 4.20 8.11 -2.39 -0.02 4.18 16 34 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -65.55 351.81 3.77 -61.78 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 1.06 Total: 23.47 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 6.09 Total: 4.51 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -1.36 Total: -70.52 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -1.56 Total: -52.19 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Atomic # 16 Polarization: -6.56 SS G_CDS: -2.50 Total: -9.06 kcal Total: -65.55 3.77 -61.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701272431.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.235 kcal (2) G-P(sol) polarization free energy of solvation -65.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds