Wall clock time and date at job start Tue Mar 31 2020 11:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31341 * 1 3 3 Si 1.86801 * 120.00013 * 2 1 4 4 H 1.48493 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46925 * 300.00155 * 3 2 1 6 6 H 1.48504 * 109.47398 * 59.99577 * 3 2 1 7 7 C 1.39021 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99831 * 197.05299 * 7 2 1 9 9 N 1.36867 * 119.99866 * 17.05721 * 7 2 1 10 10 C 1.38256 * 125.62152 * 218.71265 * 9 7 2 11 11 C 1.46713 * 125.44816 * 359.97438 * 10 9 7 12 12 O 1.21592 * 120.00253 * 185.53102 * 11 10 9 13 13 O 1.34872 * 119.99740 * 5.53271 * 11 10 9 14 14 C 1.45201 * 116.99865 * 183.95999 * 13 11 10 15 15 H 1.09008 * 110.36125 * 329.27546 * 14 13 11 16 16 C 1.54462 * 110.40601 * 206.94259 * 14 13 11 17 17 C 1.54369 * 103.04762 * 241.46525 * 16 14 13 18 18 O 1.45950 * 105.06731 * 17.82074 * 17 16 14 19 19 C 1.34564 * 108.39989 * 327.55628 * 18 17 16 20 20 O 1.20826 * 125.94604 * 213.37367 * 19 18 17 21 21 C 1.36214 * 109.10151 * 180.24817 * 10 9 7 22 22 C 1.41648 * 107.74597 * 359.64387 * 21 10 9 23 23 C 1.40046 * 133.34019 * 180.09050 * 22 21 10 24 24 C 1.36569 * 119.83109 * 180.26993 * 23 22 21 25 25 C 1.38867 * 120.60301 * 359.97438 * 24 23 22 26 26 C 1.37842 * 120.63643 * 0.02932 * 25 24 23 27 27 C 1.37822 * 125.62523 * 38.74207 * 9 7 2 28 28 H 0.97005 * 120.00097 * 4.94151 * 1 2 3 29 29 H 1.09002 * 110.69920 * 359.85517 * 16 14 13 30 30 H 1.09007 * 110.70377 * 122.90260 * 16 14 13 31 31 H 1.08998 * 110.31959 * 136.71421 * 17 16 14 32 32 H 1.08999 * 110.32252 * 258.92375 * 17 16 14 33 33 H 1.08002 * 126.12551 * 179.77285 * 21 10 9 34 34 H 1.08003 * 120.08572 * 0.28643 * 23 22 21 35 35 H 1.07993 * 119.69876 * 180.02562 * 24 23 22 36 36 H 1.07998 * 119.68281 * 179.97438 * 25 24 23 37 37 H 1.07996 * 120.09428 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 3.7073 1.3464 -0.0006 5 1 1.8886 2.3964 -1.2125 6 1 1.8886 2.3966 1.2125 7 6 2.0085 -1.2040 0.0005 8 1 3.0529 -1.2244 0.2748 9 7 1.3693 -2.3633 -0.3466 10 6 1.5574 -3.5963 0.2499 11 6 2.4768 -3.8734 1.3592 12 8 2.6391 -5.0156 1.7435 13 8 3.1419 -2.8613 1.9527 14 6 4.1005 -3.2173 2.9835 15 1 3.7848 -4.1251 3.4979 16 6 4.2645 -2.0573 3.9902 17 6 5.7560 -1.6840 3.8517 18 8 6.1771 -2.2683 2.5823 19 6 5.4798 -3.4022 2.3846 20 8 5.8837 -4.3951 1.8271 21 6 0.7572 -4.5138 -0.3609 22 6 0.0286 -3.8444 -1.3747 23 6 -0.9275 -4.2642 -2.3078 24 6 -1.4618 -3.3641 -3.1849 25 6 -1.0661 -2.0332 -3.1608 26 6 -0.1266 -1.5960 -2.2518 27 6 0.4324 -2.4944 -1.3489 28 1 -0.4850 0.8370 -0.0724 29 1 3.6294 -1.2154 3.7147 30 1 4.0408 -2.3917 5.0033 31 1 5.8743 -0.6007 3.8275 32 1 6.3308 -2.1103 4.6739 33 1 0.6887 -5.5632 -0.1149 34 1 -1.2418 -5.2972 -2.3335 35 1 -2.1993 -3.6900 -3.9033 36 1 -1.4980 -1.3340 -3.8616 37 1 0.1750 -0.5591 -2.2410 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729768050.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:15 Heat of formation + Delta-G solvation = -110.506148 kcal Electronic energy + Delta-G solvation = -26314.726645 eV Core-core repulsion = 22408.660309 eV Total energy + Delta-G solvation = -3906.066337 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.59205 -42.10008 -40.76352 -38.86785 -37.71075 -37.59221 -35.47318 -33.43815 -32.53592 -30.82644 -30.08483 -28.76637 -26.80708 -25.53472 -23.56306 -22.90669 -22.66858 -21.97910 -21.14676 -19.90745 -19.14362 -18.57197 -18.28076 -18.02594 -17.34088 -16.83784 -16.69792 -16.46905 -16.37052 -15.43197 -15.18704 -14.90721 -14.87239 -14.72586 -14.61877 -14.22491 -13.73420 -13.64255 -13.52820 -13.34130 -13.20069 -13.00671 -12.86442 -12.46541 -12.38411 -12.16692 -12.00092 -11.95883 -11.54498 -11.52044 -11.22494 -10.96723 -10.47457 -9.03303 -8.75280 -8.37079 -6.41370 -0.17228 0.34921 1.05520 1.09377 1.37142 1.39853 1.52157 1.53546 2.05051 2.12269 2.24673 2.69031 2.74579 2.85005 3.13458 3.31861 3.56366 3.81241 3.90571 4.12568 4.18345 4.41326 4.46260 4.56580 4.68414 4.70947 4.73451 4.80475 4.93859 5.07434 5.13114 5.15738 5.29241 5.41584 5.44155 5.69031 5.86845 5.92805 5.99860 6.10807 6.24663 6.53737 6.54809 6.91988 7.39295 8.35894 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013522 B = 0.005670 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.128574 B = 4937.126290 C = 6529.865251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.023 3.977 3 Si 0.992 3.008 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.367 4.367 8 H 0.106 0.894 9 N -0.256 5.256 10 C -0.056 4.056 11 C 0.542 3.458 12 O -0.526 6.526 13 O -0.314 6.314 14 C 0.012 3.988 15 H 0.127 0.873 16 C -0.142 4.142 17 C 0.051 3.949 18 O -0.358 6.358 19 C 0.475 3.525 20 O -0.473 6.473 21 C -0.162 4.162 22 C -0.153 4.153 23 C -0.087 4.087 24 C -0.149 4.149 25 C -0.131 4.131 26 C -0.084 4.084 27 C 0.067 3.933 28 H 0.287 0.713 29 H 0.108 0.892 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.126 0.874 33 H 0.150 0.850 34 H 0.138 0.862 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.416 2.856 6.064 7.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.187 4.187 3 Si 0.811 3.189 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.494 4.494 8 H 0.124 0.876 9 N 0.081 4.919 10 C -0.168 4.168 11 C 0.390 3.610 12 O -0.416 6.416 13 O -0.231 6.231 14 C -0.045 4.045 15 H 0.144 0.856 16 C -0.178 4.178 17 C -0.021 4.021 18 O -0.276 6.276 19 C 0.314 3.686 20 O -0.356 6.356 21 C -0.190 4.190 22 C -0.157 4.157 23 C -0.106 4.106 24 C -0.168 4.168 25 C -0.152 4.152 26 C -0.104 4.104 27 C -0.049 4.049 28 H 0.098 0.902 29 H 0.127 0.873 30 H 0.167 0.833 31 H 0.162 0.838 32 H 0.144 0.856 33 H 0.168 0.832 34 H 0.156 0.844 35 H 0.168 0.832 36 H 0.158 0.842 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.877 2.610 6.073 7.663 hybrid contribution 0.254 0.436 0.183 0.537 sum 4.131 3.046 6.256 8.092 Atomic orbital electron populations 1.70081 1.07801 1.30806 1.38816 1.26465 0.96016 1.03172 0.93093 0.84927 0.79002 0.75773 0.79154 1.18155 1.19084 1.18541 1.20116 0.95843 0.83486 1.49969 0.87636 1.40306 1.26745 1.05595 1.19243 1.19436 1.07210 0.89491 1.00671 1.20141 0.77575 0.82742 0.80529 1.90782 1.64737 1.22298 1.63806 1.87079 1.49698 1.36568 1.49734 1.24364 0.85844 1.04626 0.89653 0.85569 1.23222 0.98089 0.97025 0.99506 1.24637 0.93420 1.02611 0.81463 1.87302 1.63454 1.35131 1.41714 1.23788 0.87787 0.81015 0.75962 1.90690 1.77038 1.28523 1.39380 1.20614 0.99956 0.98568 0.99854 1.18342 1.03120 0.92807 1.01397 1.20499 0.95521 1.00310 0.94256 1.20792 1.02319 0.92873 1.00805 1.21072 0.97840 0.97008 0.99235 1.20208 0.98074 0.97422 0.94728 1.18671 0.97755 0.95218 0.93259 0.90206 0.87331 0.83257 0.83822 0.85588 0.83223 0.84413 0.83231 0.84204 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -42.46 10.85 21.67 0.24 -42.22 16 2 C 0.02 1.09 4.46 84.95 0.38 1.47 16 3 Si 0.99 36.54 29.59 68.60 2.03 38.57 16 4 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 5 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 6 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 7 C -0.37 -18.96 8.71 84.10 0.73 -18.23 16 8 H 0.11 5.43 6.90 -2.91 -0.02 5.41 16 9 N -0.26 -13.69 2.83 -331.41 -0.94 -14.63 16 10 C -0.06 -2.86 6.76 39.87 0.27 -2.60 16 11 C 0.54 25.94 7.90 70.04 0.55 26.50 16 12 O -0.53 -25.39 16.12 19.53 0.31 -25.07 16 13 O -0.31 -13.30 7.70 -57.86 -0.45 -13.74 16 14 C 0.01 0.39 3.37 30.60 0.10 0.49 16 15 H 0.13 3.85 7.19 -2.38 -0.02 3.83 16 16 C -0.14 -2.60 6.99 31.56 0.22 -2.38 16 17 C 0.05 0.78 7.84 72.45 0.57 1.35 16 18 O -0.36 -10.43 11.17 -55.10 -0.62 -11.04 16 19 C 0.48 16.76 8.19 71.49 0.59 17.35 16 20 O -0.47 -20.47 18.00 21.55 0.39 -20.08 16 21 C -0.16 -7.76 10.55 22.64 0.24 -7.53 16 22 C -0.15 -7.18 6.16 -21.34 -0.13 -7.32 16 23 C -0.09 -3.33 10.06 22.32 0.22 -3.11 16 24 C -0.15 -5.12 9.97 22.03 0.22 -4.90 16 25 C -0.13 -4.94 10.02 22.33 0.22 -4.72 16 26 C -0.08 -3.93 8.55 22.38 0.19 -3.73 16 27 C 0.07 3.41 6.08 39.07 0.24 3.65 16 28 H 0.29 13.18 8.31 -92.70 -0.77 12.41 16 29 H 0.11 2.20 8.01 -2.39 -0.02 2.18 16 30 H 0.15 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.15 6.44 8.06 -2.91 -0.02 6.41 16 34 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 35 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 36 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 37 H 0.10 4.86 6.43 -2.91 -0.02 4.84 16 Total: -1.00 -73.08 326.69 6.71 -66.38 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 1.12 Total: 25.54 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 4.62 Total: -3.70 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.70 Total: -56.85 kcal Atomic # 8 Polarization: -69.57 SS G_CDS: -0.36 Total: -69.93 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.57 kcal Total: -73.08 6.71 -66.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729768050.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.130 kcal (2) G-P(sol) polarization free energy of solvation -73.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds