Wall clock time and date at job start Tue Mar 31 2020 11:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48500 * 109.46689 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47321 * 300.00026 * 3 2 1 6 6 H 1.48494 * 109.46926 * 60.00260 * 3 2 1 7 7 C 1.39024 * 119.99583 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99753 * 163.38371 * 7 2 1 9 9 N 1.36869 * 120.00419 * 343.37123 * 7 2 1 10 10 C 1.38247 * 125.62055 * 139.64124 * 9 7 2 11 11 C 1.46720 * 125.44982 * 0.02562 * 10 9 7 12 12 O 1.21597 * 119.99625 * 177.81235 * 11 10 9 13 13 O 1.34857 * 119.99809 * 357.81771 * 11 10 9 14 14 C 1.45209 * 116.99990 * 179.03183 * 13 11 10 15 15 H 1.09000 * 110.32234 * 37.57699 * 14 13 11 16 16 C 1.54488 * 110.46141 * 159.87628 * 14 13 11 17 17 C 1.54577 * 102.14419 * 134.22559 * 16 14 13 18 18 O 1.46032 * 104.35915 * 332.95220 * 17 16 14 19 19 C 1.34061 * 109.79112 * 30.97265 * 18 17 16 20 20 O 1.20830 * 125.09438 * 159.03332 * 19 18 17 21 21 C 1.36222 * 109.10528 * 180.29176 * 10 9 7 22 22 C 1.41658 * 107.73696 * 359.58170 * 21 10 9 23 23 C 1.40051 * 133.33507 * 180.11743 * 22 21 10 24 24 C 1.36572 * 119.82656 * 180.32839 * 23 22 21 25 25 C 1.38866 * 120.60446 * 0.02562 * 24 23 22 26 26 C 1.37841 * 120.63716 * 359.93752 * 25 24 23 27 27 C 1.37824 * 125.62142 * 319.67389 * 9 7 2 28 28 H 0.97000 * 119.99844 * 5.10462 * 1 2 3 29 29 H 1.08996 * 110.87137 * 252.38988 * 16 14 13 30 30 H 1.09005 * 110.86739 * 16.07260 * 16 14 13 31 31 H 1.09005 * 110.43601 * 91.89247 * 17 16 14 32 32 H 1.08993 * 110.44539 * 214.40901 * 17 16 14 33 33 H 1.07995 * 126.12853 * 179.73750 * 21 10 9 34 34 H 1.07994 * 120.08327 * 0.30286 * 23 22 21 35 35 H 1.08001 * 119.69400 * 179.97438 * 24 23 22 36 36 H 1.07997 * 119.67543 * 179.97438 * 25 24 23 37 37 H 1.07993 * 120.09200 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7074 1.3463 -0.0006 5 1 1.8887 2.3965 -1.2125 6 1 1.8887 2.3963 1.2125 7 6 2.0085 -1.2040 -0.0005 8 1 3.0546 -1.2235 -0.2680 9 7 1.3671 -2.3647 0.3381 10 6 1.5355 -3.5884 -0.2827 11 6 2.4329 -3.8528 -1.4129 12 8 2.5335 -4.9797 -1.8586 13 8 3.1462 -2.8461 -1.9574 14 6 4.0299 -3.1848 -3.0587 15 1 3.5686 -3.9393 -3.6960 16 6 4.3749 -1.9237 -3.8817 17 6 5.9035 -2.0627 -4.0644 18 8 6.3369 -2.8424 -2.9082 19 6 5.3598 -3.6804 -2.5336 20 8 5.5168 -4.6789 -1.8716 21 6 0.7305 -4.5081 0.3188 22 6 0.0327 -3.8534 1.3633 23 6 -0.9107 -4.2823 2.3054 24 6 -1.4227 -3.3935 3.2071 25 6 -1.0171 -2.0655 3.1993 26 6 -0.0893 -1.6198 2.2824 27 6 0.4463 -2.5061 1.3539 28 1 -0.4850 0.8367 -0.0747 29 1 3.8658 -1.9377 -4.8454 30 1 4.1311 -1.0185 -3.3256 31 1 6.1296 -2.5907 -4.9908 32 1 6.3784 -1.0817 -4.0587 33 1 0.6423 -5.5502 0.0495 34 1 -1.2327 -5.3130 2.3184 35 1 -2.1504 -3.7265 3.9324 36 1 -1.4320 -1.3754 3.9190 37 1 0.2202 -0.5852 2.2845 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729768055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:18 Heat of formation + Delta-G solvation = -95.783908 kcal Electronic energy + Delta-G solvation = -26287.094921 eV Core-core repulsion = 22381.666989 eV Total energy + Delta-G solvation = -3905.427933 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.21553 -40.46483 -39.13263 -37.46039 -36.08875 -35.90972 -33.67241 -32.37597 -30.79544 -29.14961 -28.44217 -27.52145 -25.00693 -23.88945 -22.69176 -21.40135 -21.02773 -20.36209 -19.36533 -18.19327 -17.54915 -17.44641 -17.00691 -16.36609 -15.66904 -15.25551 -15.17640 -14.87773 -14.74244 -14.05181 -13.82319 -13.49506 -13.28537 -13.09236 -12.92476 -12.88026 -12.53763 -12.31019 -12.00115 -11.81400 -11.55356 -11.43842 -11.35582 -11.16148 -10.80961 -10.73262 -10.64040 -10.29633 -10.13477 -9.84922 -9.77083 -9.27277 -8.72344 -7.23852 -6.95522 -6.68654 -4.55258 1.59291 1.88130 2.70289 2.80884 2.85933 2.92155 2.95315 3.00273 3.31521 3.68435 3.79645 4.04606 4.09553 4.40314 4.56636 4.59728 4.65640 4.98733 5.02421 5.16490 5.41000 5.55003 5.74252 5.81833 5.92049 6.09104 6.35807 6.47476 6.53593 6.59214 6.70986 6.84523 6.94879 7.03774 7.08928 7.39949 7.43412 7.53261 7.60806 7.83885 7.94604 8.27030 8.32674 8.71305 9.20009 10.10477 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.005578 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.903353 B = 5018.090760 C = 6651.736428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.054 3.946 3 Si 0.929 3.071 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.344 4.344 8 H 0.115 0.885 9 N -0.238 5.238 10 C -0.020 4.020 11 C 0.542 3.458 12 O -0.509 6.509 13 O -0.306 6.306 14 C 0.027 3.973 15 H 0.122 0.878 16 C -0.151 4.151 17 C 0.056 3.944 18 O -0.342 6.342 19 C 0.467 3.533 20 O -0.427 6.427 21 C -0.157 4.157 22 C -0.131 4.131 23 C -0.084 4.084 24 C -0.157 4.157 25 C -0.147 4.147 26 C -0.051 4.051 27 C 0.095 3.905 28 H 0.283 0.717 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.135 0.865 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.564 2.059 -6.115 7.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.159 4.159 3 Si 0.753 3.247 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.472 4.472 8 H 0.133 0.867 9 N 0.100 4.900 10 C -0.133 4.133 11 C 0.390 3.610 12 O -0.397 6.397 13 O -0.223 6.223 14 C -0.031 4.031 15 H 0.140 0.860 16 C -0.189 4.189 17 C -0.019 4.019 18 O -0.259 6.259 19 C 0.305 3.695 20 O -0.307 6.307 21 C -0.185 4.185 22 C -0.136 4.136 23 C -0.103 4.103 24 C -0.176 4.176 25 C -0.168 4.168 26 C -0.071 4.071 27 C -0.021 4.021 28 H 0.094 0.906 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.153 0.847 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.934 1.721 -5.964 7.929 hybrid contribution 0.113 0.847 -0.374 0.933 sum 5.047 2.568 -6.338 8.499 Atomic orbital electron populations 1.69961 1.06499 1.29515 1.38492 1.25690 0.95466 1.00649 0.94111 0.85827 0.80279 0.79881 0.78746 1.18322 1.19811 1.19579 1.19956 0.96068 0.82206 1.48986 0.86726 1.40098 1.26583 1.05611 1.17709 1.18967 1.06066 0.89481 0.98788 1.20200 0.77252 0.82214 0.81343 1.90830 1.64766 1.22621 1.61503 1.87090 1.51465 1.38412 1.45304 1.23810 0.89658 0.99715 0.89941 0.86012 1.23088 0.95385 0.98794 1.01590 1.24186 0.94098 0.96970 0.86606 1.87111 1.42534 1.50246 1.46011 1.23403 0.86416 0.81382 0.78339 1.90765 1.85396 1.20467 1.34105 1.20318 1.00462 0.98187 0.99484 1.17928 1.02332 0.93391 0.99922 1.20062 0.96880 0.98309 0.95063 1.20290 1.02632 0.93946 1.00716 1.20577 1.00095 0.95658 1.00435 1.20074 0.96090 0.97990 0.92946 1.18150 0.97766 0.93881 0.92320 0.90616 0.87287 0.86932 0.89192 0.86510 0.84733 0.87592 0.87769 0.87554 0.86806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.11 11.04 55.50 0.61 -19.50 16 2 C 0.05 1.27 4.46 -17.47 -0.08 1.20 16 3 Si 0.93 17.68 29.59 -169.99 -5.03 12.65 16 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.34 -8.53 8.69 -15.01 -0.13 -8.66 16 8 H 0.12 2.78 6.89 -52.49 -0.36 2.42 16 9 N -0.24 -6.12 2.82 -56.10 -0.16 -6.27 16 10 C -0.02 -0.50 6.76 -82.27 -0.56 -1.05 16 11 C 0.54 12.51 7.83 34.16 0.27 12.78 16 12 O -0.51 -11.95 16.06 -19.40 -0.31 -12.26 16 13 O -0.31 -6.25 7.73 -40.99 -0.32 -6.56 16 14 C 0.03 0.42 3.19 -26.79 -0.09 0.33 16 15 H 0.12 1.78 7.46 -51.93 -0.39 1.39 16 16 C -0.15 -1.54 6.98 -25.12 -0.18 -1.71 16 17 C 0.06 0.47 7.91 37.99 0.30 0.77 16 18 O -0.34 -4.87 11.07 -38.47 -0.43 -5.30 16 19 C 0.47 8.08 8.17 36.31 0.30 8.38 16 20 O -0.43 -9.10 17.80 -18.54 -0.33 -9.43 16 21 C -0.16 -3.69 10.55 -39.00 -0.41 -4.10 16 22 C -0.13 -3.09 6.16 -106.89 -0.66 -3.75 16 23 C -0.08 -1.71 10.06 -39.50 -0.40 -2.11 16 24 C -0.16 -2.98 9.97 -39.95 -0.40 -3.38 16 25 C -0.15 -2.95 10.02 -39.49 -0.40 -3.35 16 26 C -0.05 -1.19 8.60 -39.41 -0.34 -1.53 16 27 C 0.09 2.38 6.07 -83.83 -0.51 1.87 16 28 H 0.28 6.43 8.31 -40.82 -0.34 6.09 16 29 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.11 1.24 8.06 -51.93 -0.42 0.82 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.13 2.87 8.06 -52.49 -0.42 2.45 16 34 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.11 2.68 6.57 -52.49 -0.34 2.34 16 LS Contribution 326.80 15.07 4.92 4.92 Total: -1.00 -31.76 326.80 -7.91 -39.67 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -3.61 Total: 6.39 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -3.27 Total: -4.31 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.45 Total: -25.77 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -1.38 Total: -33.56 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.76 -7.91 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729768055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.112 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds