Wall clock time and date at job start Tue Mar 31 2020 11:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48500 * 109.46689 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47321 * 300.00026 * 3 2 1 6 6 H 1.48494 * 109.46926 * 60.00260 * 3 2 1 7 7 C 1.39024 * 119.99583 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99753 * 163.38371 * 7 2 1 9 9 N 1.36869 * 120.00419 * 343.37123 * 7 2 1 10 10 C 1.38247 * 125.62055 * 139.64124 * 9 7 2 11 11 C 1.46720 * 125.44982 * 0.02562 * 10 9 7 12 12 O 1.21597 * 119.99625 * 177.81235 * 11 10 9 13 13 O 1.34857 * 119.99809 * 357.81771 * 11 10 9 14 14 C 1.45209 * 116.99990 * 179.03183 * 13 11 10 15 15 H 1.09000 * 110.32234 * 37.57699 * 14 13 11 16 16 C 1.54488 * 110.46141 * 159.87628 * 14 13 11 17 17 C 1.54577 * 102.14419 * 134.22559 * 16 14 13 18 18 O 1.46032 * 104.35915 * 332.95220 * 17 16 14 19 19 C 1.34061 * 109.79112 * 30.97265 * 18 17 16 20 20 O 1.20830 * 125.09438 * 159.03332 * 19 18 17 21 21 C 1.36222 * 109.10528 * 180.29176 * 10 9 7 22 22 C 1.41658 * 107.73696 * 359.58170 * 21 10 9 23 23 C 1.40051 * 133.33507 * 180.11743 * 22 21 10 24 24 C 1.36572 * 119.82656 * 180.32839 * 23 22 21 25 25 C 1.38866 * 120.60446 * 0.02562 * 24 23 22 26 26 C 1.37841 * 120.63716 * 359.93752 * 25 24 23 27 27 C 1.37824 * 125.62142 * 319.67389 * 9 7 2 28 28 H 0.97000 * 119.99844 * 5.10462 * 1 2 3 29 29 H 1.08996 * 110.87137 * 252.38988 * 16 14 13 30 30 H 1.09005 * 110.86739 * 16.07260 * 16 14 13 31 31 H 1.09005 * 110.43601 * 91.89247 * 17 16 14 32 32 H 1.08993 * 110.44539 * 214.40901 * 17 16 14 33 33 H 1.07995 * 126.12853 * 179.73750 * 21 10 9 34 34 H 1.07994 * 120.08327 * 0.30286 * 23 22 21 35 35 H 1.08001 * 119.69400 * 179.97438 * 24 23 22 36 36 H 1.07997 * 119.67543 * 179.97438 * 25 24 23 37 37 H 1.07993 * 120.09200 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7074 1.3463 -0.0006 5 1 1.8887 2.3965 -1.2125 6 1 1.8887 2.3963 1.2125 7 6 2.0085 -1.2040 -0.0005 8 1 3.0546 -1.2235 -0.2680 9 7 1.3671 -2.3647 0.3381 10 6 1.5355 -3.5884 -0.2827 11 6 2.4329 -3.8528 -1.4129 12 8 2.5335 -4.9797 -1.8586 13 8 3.1462 -2.8461 -1.9574 14 6 4.0299 -3.1848 -3.0587 15 1 3.5686 -3.9393 -3.6960 16 6 4.3749 -1.9237 -3.8817 17 6 5.9035 -2.0627 -4.0644 18 8 6.3369 -2.8424 -2.9082 19 6 5.3598 -3.6804 -2.5336 20 8 5.5168 -4.6789 -1.8716 21 6 0.7305 -4.5081 0.3188 22 6 0.0327 -3.8534 1.3633 23 6 -0.9107 -4.2823 2.3054 24 6 -1.4227 -3.3935 3.2071 25 6 -1.0171 -2.0655 3.1993 26 6 -0.0893 -1.6198 2.2824 27 6 0.4463 -2.5061 1.3539 28 1 -0.4850 0.8367 -0.0747 29 1 3.8658 -1.9377 -4.8454 30 1 4.1311 -1.0185 -3.3256 31 1 6.1296 -2.5907 -4.9908 32 1 6.3784 -1.0817 -4.0587 33 1 0.6423 -5.5502 0.0495 34 1 -1.2327 -5.3130 2.3184 35 1 -2.1504 -3.7265 3.9324 36 1 -1.4320 -1.3754 3.9190 37 1 0.2202 -0.5852 2.2845 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729768055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:17 Heat of formation + Delta-G solvation = -113.150118 kcal Electronic energy + Delta-G solvation = -26287.847977 eV Core-core repulsion = 22381.666989 eV Total energy + Delta-G solvation = -3906.180988 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.58139 -42.09197 -40.73054 -38.81305 -37.71191 -37.58009 -35.44322 -33.45204 -32.55489 -30.81012 -30.06137 -28.71684 -26.81000 -25.52655 -23.64485 -22.90405 -22.66465 -21.89258 -21.09898 -19.89495 -19.09199 -18.66147 -18.35867 -17.86751 -17.32701 -16.82237 -16.60513 -16.45437 -16.37720 -15.33730 -15.21576 -14.93393 -14.85234 -14.71852 -14.57981 -14.23503 -13.84361 -13.65612 -13.52157 -13.30681 -13.13149 -13.01637 -12.84340 -12.45747 -12.37734 -12.16075 -11.97800 -11.90740 -11.57145 -11.50958 -11.17171 -11.00303 -10.47638 -8.98198 -8.72091 -8.42457 -6.40213 -0.14095 0.51723 1.06257 1.11307 1.36472 1.40479 1.52333 1.53594 2.02782 2.10661 2.26938 2.67422 2.74444 2.82221 3.11891 3.31671 3.56596 3.77395 3.92617 4.15199 4.19674 4.41060 4.46843 4.57747 4.68984 4.72601 4.74343 4.80969 4.94256 5.09854 5.14993 5.17651 5.29537 5.41806 5.49381 5.70639 5.87219 5.92914 6.08547 6.11524 6.24808 6.53894 6.58362 6.92515 7.40562 8.36788 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.005578 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.903353 B = 5018.090760 C = 6651.736428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.022 3.978 3 Si 0.996 3.004 4 H -0.256 1.256 5 H -0.259 1.259 6 H -0.269 1.269 7 C -0.370 4.370 8 H 0.108 0.892 9 N -0.255 5.255 10 C -0.054 4.054 11 C 0.542 3.458 12 O -0.524 6.524 13 O -0.316 6.316 14 C 0.014 3.986 15 H 0.129 0.871 16 C -0.140 4.140 17 C 0.053 3.947 18 O -0.352 6.352 19 C 0.468 3.532 20 O -0.483 6.483 21 C -0.165 4.165 22 C -0.153 4.153 23 C -0.088 4.088 24 C -0.149 4.149 25 C -0.132 4.132 26 C -0.084 4.084 27 C 0.067 3.933 28 H 0.288 0.712 29 H 0.148 0.852 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.137 0.863 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.206 3.470 -6.448 8.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.179 1.179 5 H -0.183 1.183 6 H -0.194 1.194 7 C -0.497 4.497 8 H 0.126 0.874 9 N 0.082 4.918 10 C -0.167 4.167 11 C 0.390 3.610 12 O -0.414 6.414 13 O -0.232 6.232 14 C -0.043 4.043 15 H 0.146 0.854 16 C -0.176 4.176 17 C -0.019 4.019 18 O -0.268 6.268 19 C 0.308 3.692 20 O -0.367 6.367 21 C -0.193 4.193 22 C -0.157 4.157 23 C -0.107 4.107 24 C -0.168 4.168 25 C -0.152 4.152 26 C -0.104 4.104 27 C -0.049 4.049 28 H 0.098 0.902 29 H 0.166 0.834 30 H 0.124 0.876 31 H 0.145 0.855 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.155 0.845 35 H 0.168 0.832 36 H 0.158 0.842 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.584 3.160 -6.329 8.430 hybrid contribution 0.185 0.403 -0.259 0.513 sum 4.769 3.563 -6.588 8.879 Atomic orbital electron populations 1.70042 1.07961 1.30562 1.39104 1.26545 0.96114 1.03319 0.92859 0.84854 0.79003 0.75420 0.79124 1.17915 1.18344 1.19353 1.20131 0.96089 0.82937 1.50520 0.87426 1.40305 1.27277 1.05918 1.18309 1.19453 1.07263 0.89958 0.99976 1.20091 0.77314 0.82429 0.81166 1.90791 1.65461 1.23102 1.62079 1.87046 1.51710 1.37663 1.46766 1.24354 0.88013 1.03030 0.88883 0.85362 1.23267 0.96942 0.95381 1.02053 1.24774 0.92752 0.98477 0.85901 1.87085 1.42190 1.49790 1.47779 1.23708 0.87502 0.80820 0.77220 1.90721 1.86313 1.23051 1.36647 1.20605 1.00351 0.98721 0.99589 1.18343 1.03466 0.93006 1.00888 1.20498 0.95720 1.00287 0.94154 1.20787 1.02391 0.92991 1.00621 1.21056 0.97942 0.96975 0.99257 1.20165 0.98295 0.97402 0.94516 1.18669 0.98222 0.95155 0.92840 0.90186 0.83394 0.87647 0.85462 0.83168 0.83405 0.84475 0.83232 0.84218 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -42.64 11.04 21.67 0.24 -42.40 16 2 C 0.02 1.05 4.46 84.95 0.38 1.43 16 3 Si 1.00 36.19 29.59 68.60 2.03 38.22 16 4 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 5 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 6 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 7 C -0.37 -19.06 8.69 84.10 0.73 -18.33 16 8 H 0.11 5.48 6.89 -2.91 -0.02 5.46 16 9 N -0.26 -13.72 2.82 -331.40 -0.93 -14.66 16 10 C -0.05 -2.81 6.76 39.88 0.27 -2.54 16 11 C 0.54 26.29 7.83 70.04 0.55 26.84 16 12 O -0.52 -25.79 16.06 19.57 0.31 -25.48 16 13 O -0.32 -13.40 7.73 -57.64 -0.45 -13.84 16 14 C 0.01 0.45 3.19 30.55 0.10 0.54 16 15 H 0.13 3.79 7.46 -2.39 -0.02 3.77 16 16 C -0.14 -2.51 6.98 31.64 0.22 -2.29 16 17 C 0.05 0.73 7.91 72.52 0.57 1.30 16 18 O -0.35 -9.68 11.07 -50.13 -0.55 -10.24 16 19 C 0.47 16.54 8.17 71.44 0.58 17.13 16 20 O -0.48 -21.68 17.80 21.75 0.39 -21.30 16 21 C -0.16 -8.03 10.55 22.64 0.24 -7.79 16 22 C -0.15 -7.29 6.16 -21.33 -0.13 -7.43 16 23 C -0.09 -3.41 10.06 22.32 0.22 -3.19 16 24 C -0.15 -5.19 9.97 22.03 0.22 -4.97 16 25 C -0.13 -5.03 10.02 22.33 0.22 -4.80 16 26 C -0.08 -3.94 8.60 22.38 0.19 -3.74 16 27 C 0.07 3.45 6.07 39.07 0.24 3.69 16 28 H 0.29 13.23 8.31 -92.71 -0.77 12.46 16 29 H 0.15 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.11 2.12 8.06 -2.38 -0.02 2.10 16 31 H 0.13 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.15 6.52 8.06 -2.91 -0.02 6.50 16 34 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 35 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 36 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.10 4.85 6.57 -2.91 -0.02 4.83 16 Total: -1.00 -74.80 326.80 6.77 -68.04 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 1.12 Total: 25.81 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 4.61 Total: -4.15 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.69 Total: -57.05 kcal Atomic # 8 Polarization: -70.56 SS G_CDS: -0.30 Total: -70.86 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Total: -74.80 6.77 -68.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729768055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.115 kcal (2) G-P(sol) polarization free energy of solvation -74.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds