Wall clock time and date at job start Tue Mar 31 2020 11:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00057 * 3 2 1 5 5 H 1.48496 * 109.47302 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00050 * 3 2 1 7 7 C 1.38956 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99687 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99763 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00500 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 O 1.42905 * 109.47264 * 179.97438 * 12 10 9 14 14 C 1.34948 * 117.00143 * 180.02562 * 13 12 10 15 15 O 1.21668 * 119.99871 * 359.97438 * 14 13 12 16 16 C 1.46134 * 119.99913 * 179.97438 * 14 13 12 17 17 O 1.34973 * 126.19464 * 359.68990 * 16 14 13 18 18 C 1.33910 * 109.70892 * 179.85666 * 17 16 14 19 19 C 1.34798 * 109.36691 * 0.41240 * 18 17 16 20 20 C 1.38890 * 126.19391 * 179.97438 * 16 14 13 21 21 C 1.48156 * 126.90557 * 0.02562 * 20 16 14 22 22 C 1.39468 * 120.13146 * 309.71753 * 21 20 16 23 23 C 1.37983 * 119.85868 * 179.72249 * 22 21 20 24 24 C 1.38343 * 120.13805 * 0.55443 * 23 22 21 25 25 C 1.38342 * 120.26649 * 359.72776 * 24 23 22 26 26 C 1.37986 * 120.13368 * 359.97438 * 25 24 23 27 27 H 0.96997 * 119.99770 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00071 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47438 * 59.99564 * 12 10 9 30 30 H 1.09004 * 109.47113 * 299.99819 * 12 10 9 31 31 H 1.07995 * 125.31461 * 180.12016 * 18 17 16 32 32 H 1.08000 * 126.43585 * 179.73080 * 19 18 17 33 33 H 1.07999 * 120.06765 * 0.02562 * 22 21 20 34 34 H 1.08009 * 119.92853 * 180.28092 * 23 22 21 35 35 H 1.07995 * 119.86651 * 179.73747 * 24 23 22 36 36 H 1.08007 * 119.93739 * 180.02562 * 25 24 23 37 37 H 1.08001 * 120.06522 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0002 12 6 1.2438 -4.8629 -0.0022 13 8 2.1724 -5.9491 -0.0027 14 6 1.6566 -7.1961 -0.0038 15 8 0.4504 -7.3555 -0.0038 16 6 2.5468 -8.3551 -0.0049 17 8 3.8961 -8.3236 -0.0108 18 6 4.3770 -9.5734 -0.0068 19 6 3.3506 -10.4473 -0.0073 20 6 2.1575 -9.6883 -0.0056 21 6 0.7709 -10.2102 -0.0058 22 6 -0.1558 -9.7360 0.9222 23 6 -1.4473 -10.2219 0.9132 24 6 -1.8204 -11.1857 -0.0064 25 6 -0.9040 -11.6643 -0.9256 26 6 0.3888 -11.1817 -0.9305 27 1 -0.4850 0.8400 0.0004 28 1 0.3534 -2.3906 -0.0016 29 1 0.6174 -4.9205 -0.8924 30 1 0.6168 -4.9209 0.8876 31 1 5.4236 -9.8396 -0.0082 32 1 3.4255 -11.5247 -0.0087 33 1 0.1354 -8.9865 1.6432 34 1 -2.1671 -9.8521 1.6285 35 1 -2.8312 -11.5660 -0.0067 36 1 -1.2011 -12.4165 -1.6414 37 1 1.1032 -11.5558 -1.6489 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731236416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:46 Heat of formation + Delta-G solvation = -72.944952 kcal Electronic energy + Delta-G solvation = -24602.553204 eV Core-core repulsion = 20698.115643 eV Total energy + Delta-G solvation = -3904.437561 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.85432 -40.25091 -39.10385 -38.11155 -36.30825 -34.04244 -33.96264 -31.39988 -31.21958 -30.94364 -29.81716 -28.20462 -24.96605 -23.98511 -23.01282 -22.57406 -21.35522 -20.08121 -19.60333 -18.60839 -18.07701 -17.28950 -16.86357 -16.47716 -16.22148 -15.90166 -15.63521 -14.95616 -14.92360 -14.55500 -13.99927 -13.96295 -13.64755 -13.51593 -13.32653 -13.20634 -13.03445 -12.57035 -12.36678 -12.06297 -11.61467 -11.40354 -11.26740 -11.10735 -10.80563 -10.48203 -10.41185 -10.31893 -10.28361 -9.58857 -9.18404 -9.00161 -8.52790 -8.50044 -8.07515 -6.49127 -3.91108 0.47332 1.25188 1.33755 2.08741 2.26100 2.80106 2.94525 3.16259 3.23439 3.28546 3.67587 3.74453 4.11709 4.25144 4.51955 4.63399 4.84353 4.84879 4.96283 5.03735 5.10121 5.15491 5.28606 5.34603 5.43343 5.55827 5.57994 5.68040 5.80241 5.92424 5.95211 6.03914 6.32958 6.39057 6.41608 6.46922 6.64447 6.84734 7.48522 7.73242 7.95300 8.49502 9.07831 9.39944 9.90165 10.68078 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.002746 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.907231 B =10194.728682 C =11369.440704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.439 3.561 11 O -0.574 6.574 12 C 0.059 3.941 13 O -0.309 6.309 14 C 0.543 3.457 15 O -0.480 6.480 16 C -0.047 4.047 17 O -0.138 6.138 18 C 0.009 3.991 19 C -0.217 4.217 20 C -0.042 4.042 21 C -0.034 4.034 22 C -0.064 4.064 23 C -0.122 4.122 24 C -0.113 4.113 25 C -0.128 4.128 26 C -0.099 4.099 27 H 0.274 0.726 28 H 0.395 0.605 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.215 0.785 32 H 0.162 0.838 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.530 -24.021 0.173 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.432 4.432 8 H 0.123 0.877 9 N -0.189 5.189 10 C 0.223 3.777 11 O -0.458 6.458 12 C -0.019 4.019 13 O -0.223 6.223 14 C 0.387 3.613 15 O -0.370 6.370 16 C -0.098 4.098 17 O -0.031 6.031 18 C -0.062 4.062 19 C -0.235 4.235 20 C -0.045 4.045 21 C -0.035 4.035 22 C -0.082 4.082 23 C -0.140 4.140 24 C -0.131 4.131 25 C -0.146 4.146 26 C -0.117 4.117 27 H 0.084 0.916 28 H 0.229 0.771 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.231 0.769 32 H 0.179 0.821 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.055 -23.555 0.171 23.556 hybrid contribution -0.354 0.737 -0.053 0.819 sum -0.409 -22.818 0.118 22.822 Atomic orbital electron populations 1.69606 1.05995 1.28589 1.49605 1.25310 0.95687 0.99849 0.96872 0.85855 0.78752 0.80062 0.79207 1.19743 1.20863 1.19748 1.19681 0.93466 0.81757 1.48288 0.87662 1.41681 1.09364 1.04024 1.63840 1.19275 0.88310 0.84000 0.86072 1.90572 1.13386 1.86706 1.55143 1.22468 0.91131 0.84677 1.03635 1.86295 1.39892 1.13480 1.82671 1.19153 0.85695 0.82314 0.74104 1.90978 1.13662 1.86103 1.46211 1.21058 0.80728 0.92584 1.15444 1.84235 1.19625 1.30240 1.69023 1.24397 1.00322 0.80347 1.01102 1.21778 0.90478 1.01234 1.10055 1.19479 0.94076 0.89989 1.00905 1.18001 0.90357 0.97677 0.97428 1.21160 0.92747 0.96934 0.97346 1.21070 0.96020 0.97428 0.99481 1.21224 0.99407 0.97050 0.95399 1.21006 0.93388 1.00798 0.99448 1.21112 0.96526 0.96180 0.97837 0.91571 0.77127 0.89472 0.89462 0.76875 0.82072 0.86024 0.85809 0.86105 0.85948 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 8 H 0.11 3.05 7.16 -52.49 -0.38 2.68 16 9 N -0.55 -14.11 5.29 -10.96 -0.06 -14.17 16 10 C 0.44 10.80 7.86 -10.98 -0.09 10.72 16 11 O -0.57 -16.36 16.08 -14.36 -0.23 -16.59 16 12 C 0.06 1.15 5.86 36.01 0.21 1.36 16 13 O -0.31 -6.17 9.66 -48.55 -0.47 -6.64 16 14 C 0.54 9.42 7.89 33.90 0.27 9.69 16 15 O -0.48 -8.41 13.20 -19.39 -0.26 -8.67 16 16 C -0.05 -0.71 7.24 -36.17 -0.26 -0.97 16 17 O -0.14 -1.92 10.65 4.67 0.05 -1.87 16 18 C 0.01 0.08 12.02 29.51 0.35 0.43 16 19 C -0.22 -2.02 10.81 -39.60 -0.43 -2.45 16 20 C -0.04 -0.54 5.69 -104.38 -0.59 -1.13 16 21 C -0.03 -0.43 5.28 -104.91 -0.55 -0.98 16 22 C -0.06 -0.81 7.65 -39.22 -0.30 -1.11 16 23 C -0.12 -1.33 10.03 -39.64 -0.40 -1.73 16 24 C -0.11 -1.08 10.04 -39.50 -0.40 -1.48 16 25 C -0.13 -1.21 10.03 -39.64 -0.40 -1.61 16 26 C -0.10 -1.04 9.74 -39.22 -0.38 -1.42 16 27 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 29 H 0.09 1.54 8.13 -51.93 -0.42 1.12 16 30 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 31 H 0.21 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.12 1.61 7.35 -52.49 -0.39 1.23 16 34 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -33.91 339.43 -6.95 -40.86 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -3.60 Total: 8.29 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -3.21 Total: 1.31 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.67 Total: -37.63 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.91 Total: -33.77 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.91 -6.95 -40.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.081 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds