Wall clock time and date at job start Tue Mar 31 2020 11:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00057 * 3 2 1 5 5 H 1.48496 * 109.47302 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00050 * 3 2 1 7 7 C 1.38956 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99687 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99763 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00500 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 O 1.42905 * 109.47264 * 179.97438 * 12 10 9 14 14 C 1.34948 * 117.00143 * 180.02562 * 13 12 10 15 15 O 1.21668 * 119.99871 * 359.97438 * 14 13 12 16 16 C 1.46134 * 119.99913 * 179.97438 * 14 13 12 17 17 O 1.34973 * 126.19464 * 359.68990 * 16 14 13 18 18 C 1.33910 * 109.70892 * 179.85666 * 17 16 14 19 19 C 1.34798 * 109.36691 * 0.41240 * 18 17 16 20 20 C 1.38890 * 126.19391 * 179.97438 * 16 14 13 21 21 C 1.48156 * 126.90557 * 0.02562 * 20 16 14 22 22 C 1.39468 * 120.13146 * 309.71753 * 21 20 16 23 23 C 1.37983 * 119.85868 * 179.72249 * 22 21 20 24 24 C 1.38343 * 120.13805 * 0.55443 * 23 22 21 25 25 C 1.38342 * 120.26649 * 359.72776 * 24 23 22 26 26 C 1.37986 * 120.13368 * 359.97438 * 25 24 23 27 27 H 0.96997 * 119.99770 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00071 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47438 * 59.99564 * 12 10 9 30 30 H 1.09004 * 109.47113 * 299.99819 * 12 10 9 31 31 H 1.07995 * 125.31461 * 180.12016 * 18 17 16 32 32 H 1.08000 * 126.43585 * 179.73080 * 19 18 17 33 33 H 1.07999 * 120.06765 * 0.02562 * 22 21 20 34 34 H 1.08009 * 119.92853 * 180.28092 * 23 22 21 35 35 H 1.07995 * 119.86651 * 179.73747 * 24 23 22 36 36 H 1.08007 * 119.93739 * 180.02562 * 25 24 23 37 37 H 1.08001 * 120.06522 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0002 12 6 1.2438 -4.8629 -0.0022 13 8 2.1724 -5.9491 -0.0027 14 6 1.6566 -7.1961 -0.0038 15 8 0.4504 -7.3555 -0.0038 16 6 2.5468 -8.3551 -0.0049 17 8 3.8961 -8.3236 -0.0108 18 6 4.3770 -9.5734 -0.0068 19 6 3.3506 -10.4473 -0.0073 20 6 2.1575 -9.6883 -0.0056 21 6 0.7709 -10.2102 -0.0058 22 6 -0.1558 -9.7360 0.9222 23 6 -1.4473 -10.2219 0.9132 24 6 -1.8204 -11.1857 -0.0064 25 6 -0.9040 -11.6643 -0.9256 26 6 0.3888 -11.1817 -0.9305 27 1 -0.4850 0.8400 0.0004 28 1 0.3534 -2.3906 -0.0016 29 1 0.6174 -4.9205 -0.8924 30 1 0.6168 -4.9209 0.8876 31 1 5.4236 -9.8396 -0.0082 32 1 3.4255 -11.5247 -0.0087 33 1 0.1354 -8.9865 1.6432 34 1 -2.1671 -9.8521 1.6285 35 1 -2.8312 -11.5660 -0.0067 36 1 -1.2011 -12.4165 -1.6414 37 1 1.1032 -11.5558 -1.6489 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731236416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:46 Heat of formation + Delta-G solvation = -93.606901 kcal Electronic energy + Delta-G solvation = -24603.449173 eV Core-core repulsion = 20698.115643 eV Total energy + Delta-G solvation = -3905.333530 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.76898 -41.65909 -40.10398 -39.84259 -37.75099 -36.07408 -34.89728 -33.45694 -32.08907 -31.75216 -30.91553 -29.69471 -26.77705 -25.19797 -23.86695 -23.49907 -22.26724 -21.50899 -21.09800 -20.11796 -19.71833 -18.41071 -18.13347 -17.87720 -17.40788 -17.09226 -16.98267 -16.52549 -15.86785 -15.77388 -15.70623 -15.60796 -14.88487 -14.42572 -14.31678 -14.13740 -14.00467 -13.97253 -13.75276 -13.57400 -13.37811 -12.95516 -12.51429 -12.21565 -12.13710 -12.07187 -12.05559 -11.89683 -11.60173 -11.17166 -10.56317 -10.15042 -10.00458 -9.81414 -9.40915 -8.54507 -6.05610 -0.54766 0.41859 0.52893 1.08522 1.25222 1.35801 1.41814 1.53265 1.66380 1.83535 1.88221 2.29382 2.86104 3.01604 3.10598 3.43706 3.64520 3.78839 3.95321 4.08719 4.09354 4.10480 4.16873 4.25381 4.28967 4.47764 4.61422 4.67703 4.83071 5.03151 5.05615 5.14357 5.23946 5.34381 5.54736 5.57567 5.61226 5.76471 5.86161 6.07217 6.39145 6.50319 6.99778 7.35847 7.89734 8.62345 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.002746 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.907231 B =10194.728682 C =11369.440704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.007 4.007 3 Si 0.999 3.001 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.341 4.341 8 H 0.084 0.916 9 N -0.555 5.555 10 C 0.436 3.564 11 O -0.619 6.619 12 C 0.071 3.929 13 O -0.335 6.335 14 C 0.542 3.458 15 O -0.492 6.492 16 C -0.101 4.101 17 O -0.166 6.166 18 C 0.032 3.968 19 C -0.218 4.218 20 C -0.027 4.027 21 C -0.060 4.060 22 C -0.087 4.087 23 C -0.135 4.135 24 C -0.112 4.112 25 C -0.127 4.127 26 C -0.101 4.101 27 H 0.282 0.718 28 H 0.401 0.599 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.264 0.736 32 H 0.197 0.803 33 H 0.102 0.898 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.682 -26.059 -0.451 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.208 4.208 3 Si 0.822 3.178 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.102 0.898 9 N -0.192 5.192 10 C 0.222 3.778 11 O -0.506 6.506 12 C -0.006 4.006 13 O -0.250 6.250 14 C 0.388 3.612 15 O -0.382 6.382 16 C -0.151 4.151 17 O -0.061 6.061 18 C -0.037 4.037 19 C -0.236 4.236 20 C -0.029 4.029 21 C -0.060 4.060 22 C -0.105 4.105 23 C -0.153 4.153 24 C -0.130 4.130 25 C -0.145 4.145 26 C -0.119 4.119 27 H 0.091 0.909 28 H 0.235 0.765 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.279 0.721 32 H 0.215 0.785 33 H 0.120 0.880 34 H 0.153 0.847 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.253 -25.610 -0.451 25.615 hybrid contribution -0.311 1.186 0.142 1.235 sum -0.564 -24.424 -0.309 24.432 Atomic orbital electron populations 1.69665 1.06965 1.29898 1.48865 1.26149 0.96609 1.02601 0.95483 0.84905 0.77767 0.76000 0.79171 1.19458 1.19191 1.19459 1.19699 0.92964 0.83363 1.50964 0.89815 1.41710 1.09564 1.04083 1.63823 1.20045 0.88030 0.85338 0.84379 1.90528 1.15525 1.87656 1.56878 1.22228 0.90375 0.82504 1.05535 1.86276 1.40627 1.14568 1.83575 1.19499 0.86263 0.81828 0.73582 1.90945 1.14090 1.86059 1.47154 1.20826 0.81317 0.92367 1.20589 1.84210 1.19206 1.32764 1.69922 1.25501 1.02407 0.78607 0.97192 1.22204 0.88853 1.02830 1.09697 1.19852 0.95421 0.89437 0.98200 1.18216 0.90381 0.98902 0.98490 1.21166 0.93970 0.97444 0.97935 1.21306 0.95554 0.98005 1.00386 1.21599 1.00825 0.96069 0.94496 1.21422 0.92758 1.00811 0.99525 1.21399 0.97635 0.95384 0.97470 0.90852 0.76474 0.87530 0.87375 0.72072 0.78548 0.87985 0.84744 0.83376 0.82874 0.83963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.09 13.05 21.66 0.28 -48.81 16 2 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 3 Si 1.00 42.53 29.55 68.60 2.03 44.56 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.34 -19.55 9.68 84.04 0.81 -18.74 16 8 H 0.08 5.08 7.16 -2.91 -0.02 5.06 16 9 N -0.55 -29.30 5.29 -306.99 -1.62 -30.93 16 10 C 0.44 22.32 7.86 87.66 0.69 23.00 16 11 O -0.62 -36.95 16.08 15.98 0.26 -36.69 16 12 C 0.07 2.87 5.86 71.24 0.42 3.29 16 13 O -0.34 -14.05 9.66 -51.59 -0.50 -14.54 16 14 C 0.54 19.76 7.89 69.87 0.55 20.32 16 15 O -0.49 -18.02 13.20 19.29 0.25 -17.76 16 16 C -0.10 -3.15 7.24 24.48 0.18 -2.97 16 17 O -0.17 -4.65 10.65 -5.25 -0.06 -4.71 16 18 C 0.03 0.51 12.02 67.03 0.81 1.32 16 19 C -0.22 -3.51 10.81 22.26 0.24 -3.27 16 20 C -0.03 -0.67 5.69 -19.71 -0.11 -0.78 16 21 C -0.06 -1.46 5.28 -20.05 -0.11 -1.57 16 22 C -0.09 -2.26 7.65 22.51 0.17 -2.09 16 23 C -0.13 -2.87 10.03 22.23 0.22 -2.65 16 24 C -0.11 -1.90 10.04 22.32 0.22 -1.68 16 25 C -0.13 -2.04 10.03 22.23 0.22 -1.81 16 26 C -0.10 -1.91 9.74 22.50 0.22 -1.69 16 27 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.40 19.85 7.90 -92.71 -0.73 19.12 16 29 H 0.11 3.85 8.13 -2.39 -0.02 3.83 16 30 H 0.11 3.87 8.13 -2.38 -0.02 3.85 16 31 H 0.26 1.15 8.06 -2.91 -0.02 1.13 16 32 H 0.20 1.68 8.06 -2.91 -0.02 1.65 16 33 H 0.10 2.94 7.35 -2.91 -0.02 2.92 16 34 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 35 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 36 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -77.02 339.43 6.05 -70.98 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.40 Total: 27.17 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 5.01 Total: 10.74 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -1.34 Total: -79.73 kcal Atomic # 8 Polarization: -73.66 SS G_CDS: -0.04 Total: -73.70 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -77.02 6.05 -70.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.629 kcal (2) G-P(sol) polarization free energy of solvation -77.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds