Wall clock time and date at job start Tue Mar 31 2020 11:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86796 * 119.99967 * 2 1 4 4 H 1.48500 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47091 * 299.99705 * 3 2 1 6 6 H 1.48499 * 109.47122 * 60.00158 * 3 2 1 7 7 C 1.38948 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99756 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00444 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00380 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99877 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00246 * 180.02562 * 10 9 7 13 13 O 1.45201 * 109.46965 * 180.02562 * 12 10 9 14 14 C 1.34753 * 116.99699 * 180.02562 * 13 12 10 15 15 O 1.21502 * 120.00239 * 359.97438 * 14 13 12 16 16 C 1.47454 * 119.99941 * 179.97438 * 14 13 12 17 17 C 1.38620 * 119.79235 * 359.97438 * 16 14 13 18 18 C 1.40175 * 119.52126 * 179.72116 * 17 16 14 19 19 C 1.40712 * 121.04241 * 180.30285 * 18 17 16 20 20 C 1.36061 * 119.67657 * 179.97438 * 19 18 17 21 21 C 1.39404 * 120.97792 * 0.02720 * 20 19 18 22 22 C 1.36093 * 121.02405 * 359.97327 * 21 20 19 23 23 C 1.40593 * 119.72250 * 359.97438 * 22 21 20 24 24 C 1.40458 * 120.98065 * 180.02562 * 23 22 21 25 25 C 1.36382 * 120.00013 * 180.02562 * 24 23 22 26 26 O 1.35725 * 119.65974 * 179.97438 * 25 24 23 27 27 H 0.97003 * 119.99473 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99389 * 0.02562 * 9 7 2 29 29 H 1.08996 * 109.47048 * 59.99619 * 12 10 9 30 30 H 1.09002 * 109.47080 * 299.99682 * 12 10 9 31 31 H 1.08002 * 120.24400 * 0.02562 * 17 16 14 32 32 H 1.07993 * 120.16176 * 359.96003 * 19 18 17 33 33 H 1.08003 * 119.51108 * 179.97438 * 20 19 18 34 34 H 1.08003 * 119.48718 * 179.97438 * 21 20 19 35 35 H 1.07997 * 120.14241 * 179.97438 * 22 21 20 36 36 H 1.08006 * 120.00325 * 0.02811 * 24 23 22 37 37 H 0.96698 * 114.00143 * 89.99890 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2436 -4.8629 -0.0011 13 8 2.1872 -5.9666 -0.0004 14 6 1.6721 -7.2118 -0.0013 15 8 0.4676 -7.3710 -0.0022 16 6 2.5703 -8.3812 -0.0012 17 6 3.9439 -8.1946 -0.0007 18 6 4.7925 -9.3103 0.0053 19 6 6.1913 -9.1580 0.0124 20 6 6.9890 -10.2602 0.0186 21 6 6.4413 -11.5422 0.0176 22 6 5.0933 -11.7291 0.0108 23 6 4.2352 -10.6154 0.0053 24 6 2.8401 -10.7777 -0.0012 25 6 2.0263 -9.6833 -0.0070 26 8 0.6791 -9.8482 -0.0137 27 1 -0.4849 0.8401 -0.0004 28 1 0.3534 -2.3906 -0.0005 29 1 0.6173 -4.9204 -0.8913 30 1 0.6167 -4.9209 0.8887 31 1 4.3574 -7.1969 0.0000 32 1 6.6297 -8.1710 0.0126 33 1 8.0623 -10.1402 0.0236 34 1 7.0970 -12.4004 0.0222 35 1 4.6844 -12.7287 0.0097 36 1 2.4117 -11.7692 -0.0015 37 1 0.2841 -9.8947 0.8676 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731238488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:35 Heat of formation + Delta-G solvation = -116.608367 kcal Electronic energy + Delta-G solvation = -24438.354053 eV Core-core repulsion = 20532.023104 eV Total energy + Delta-G solvation = -3906.330949 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.01591 -39.90544 -38.43912 -37.90675 -35.91645 -35.46110 -34.00220 -32.99338 -31.39258 -30.66064 -29.12298 -28.25528 -25.07298 -24.31680 -23.26989 -22.29114 -21.27078 -19.57655 -18.98576 -18.09210 -18.06036 -17.37892 -16.64292 -16.31704 -15.94599 -15.90082 -15.29137 -15.01132 -14.69115 -14.32467 -14.28499 -13.95288 -13.86535 -13.62307 -13.56978 -12.92969 -12.77659 -12.32131 -12.05574 -11.75997 -11.62870 -11.42793 -11.24140 -11.15162 -11.03098 -10.39520 -10.39137 -10.32658 -10.27420 -10.20719 -9.62116 -8.86485 -8.52899 -8.17452 -8.08805 -6.50466 -3.92489 0.02679 0.46035 1.64300 2.14492 2.66451 3.00242 3.11461 3.23545 3.30931 3.72015 3.73998 3.96756 4.10305 4.27495 4.45614 4.54550 4.69494 4.85119 4.87415 4.96496 5.03902 5.14534 5.14916 5.47801 5.52889 5.54232 5.58475 5.70588 5.77530 5.82295 5.99334 6.07071 6.17504 6.19401 6.37895 6.57592 6.61975 7.47529 7.48792 7.85743 7.96717 8.47926 9.06633 9.38978 9.88605 10.66844 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.002649 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.197362 B =10567.469386 C =11869.987952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.553 5.553 10 C 0.439 3.561 11 O -0.577 6.577 12 C 0.062 3.938 13 O -0.325 6.325 14 C 0.501 3.499 15 O -0.495 6.495 16 C -0.148 4.148 17 C -0.011 4.011 18 C -0.080 4.080 19 C -0.083 4.083 20 C -0.129 4.129 21 C -0.098 4.098 22 C -0.120 4.120 23 C -0.012 4.012 24 C -0.154 4.154 25 C 0.168 3.832 26 O -0.479 6.479 27 H 0.273 0.727 28 H 0.395 0.605 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.156 0.844 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.141 0.859 37 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.526 -22.971 1.706 24.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.190 5.190 10 C 0.224 3.776 11 O -0.461 6.461 12 C -0.015 4.015 13 O -0.239 6.239 14 C 0.345 3.655 15 O -0.383 6.383 16 C -0.150 4.150 17 C -0.029 4.029 18 C -0.080 4.080 19 C -0.100 4.100 20 C -0.147 4.147 21 C -0.116 4.116 22 C -0.138 4.138 23 C -0.012 4.012 24 C -0.172 4.172 25 C 0.123 3.877 26 O -0.290 6.290 27 H 0.083 0.917 28 H 0.229 0.771 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.174 0.826 32 H 0.153 0.847 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.158 0.842 37 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 7.891 -22.799 1.103 24.151 hybrid contribution -0.587 0.888 0.456 1.158 sum 7.305 -21.911 1.559 23.150 Atomic orbital electron populations 1.69629 1.06005 1.28384 1.49721 1.25322 0.95696 0.99889 0.96916 0.85740 0.79698 0.80746 0.77808 1.19086 1.20618 1.20618 1.19772 0.93492 0.81729 1.48069 0.87559 1.41710 1.09403 1.04095 1.63786 1.19306 0.88322 0.84052 0.85923 1.90552 1.13403 1.86817 1.55331 1.22753 0.90813 0.84340 1.03599 1.86578 1.40121 1.13887 1.83359 1.20962 0.87208 0.83514 0.73779 1.90846 1.15600 1.86722 1.45182 1.19556 0.93302 0.91155 1.10959 1.21910 0.91413 0.99746 0.89844 1.18105 0.94073 0.92406 1.03463 1.21212 0.91816 0.99848 0.97168 1.20895 1.00307 0.92382 1.01112 1.20961 0.95224 0.97445 0.97943 1.21023 0.93442 0.97833 1.01474 1.18043 0.92998 0.92913 0.97248 1.21091 0.92047 0.98847 1.05204 1.17925 0.84050 0.89767 0.96000 1.84793 1.15821 1.94734 1.33672 0.91671 0.77134 0.89434 0.89482 0.82591 0.84668 0.85573 0.85721 0.85268 0.84162 0.74665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 8 H 0.11 3.06 7.16 -52.48 -0.38 2.68 16 9 N -0.55 -13.99 5.29 -10.96 -0.06 -14.05 16 10 C 0.44 10.59 7.86 -10.99 -0.09 10.50 16 11 O -0.58 -15.87 16.08 -14.12 -0.23 -16.10 16 12 C 0.06 1.21 5.95 36.01 0.21 1.42 16 13 O -0.32 -6.18 8.96 -47.32 -0.42 -6.60 16 14 C 0.50 8.56 7.88 34.48 0.27 8.83 16 15 O -0.49 -9.05 14.88 -26.67 -0.40 -9.45 16 16 C -0.15 -2.11 5.88 -104.91 -0.62 -2.72 16 17 C -0.01 -0.14 9.35 -38.71 -0.36 -0.50 16 18 C -0.08 -0.90 5.74 -106.83 -0.61 -1.51 16 19 C -0.08 -0.77 9.76 -39.43 -0.38 -1.16 16 20 C -0.13 -1.00 9.95 -39.93 -0.40 -1.40 16 21 C -0.10 -0.70 9.95 -39.92 -0.40 -1.10 16 22 C -0.12 -0.96 9.76 -39.46 -0.38 -1.34 16 23 C -0.01 -0.12 5.75 -106.77 -0.61 -0.73 16 24 C -0.15 -1.56 9.64 -39.41 -0.38 -1.94 16 25 C 0.17 2.09 6.65 -39.16 -0.26 1.83 16 26 O -0.48 -5.89 11.48 -41.02 -0.47 -6.36 16 27 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 29 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.16 2.03 7.57 -52.49 -0.40 1.63 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 34 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 37 H 0.40 3.23 9.06 45.56 0.41 3.65 16 LS Contribution 336.46 15.07 5.07 5.07 Total: -1.00 -34.01 336.46 -7.83 -41.84 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -2.78 Total: 11.09 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -4.25 Total: 2.27 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.67 Total: -37.42 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -1.52 Total: -38.50 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.01 -7.83 -41.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731238488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.764 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds