Wall clock time and date at job start Tue Mar 31 2020 11:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86796 * 119.99967 * 2 1 4 4 H 1.48500 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47091 * 299.99705 * 3 2 1 6 6 H 1.48499 * 109.47122 * 60.00158 * 3 2 1 7 7 C 1.38948 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99756 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00444 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00380 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99877 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00246 * 180.02562 * 10 9 7 13 13 O 1.45201 * 109.46965 * 180.02562 * 12 10 9 14 14 C 1.34753 * 116.99699 * 180.02562 * 13 12 10 15 15 O 1.21502 * 120.00239 * 359.97438 * 14 13 12 16 16 C 1.47454 * 119.99941 * 179.97438 * 14 13 12 17 17 C 1.38620 * 119.79235 * 359.97438 * 16 14 13 18 18 C 1.40175 * 119.52126 * 179.72116 * 17 16 14 19 19 C 1.40712 * 121.04241 * 180.30285 * 18 17 16 20 20 C 1.36061 * 119.67657 * 179.97438 * 19 18 17 21 21 C 1.39404 * 120.97792 * 0.02720 * 20 19 18 22 22 C 1.36093 * 121.02405 * 359.97327 * 21 20 19 23 23 C 1.40593 * 119.72250 * 359.97438 * 22 21 20 24 24 C 1.40458 * 120.98065 * 180.02562 * 23 22 21 25 25 C 1.36382 * 120.00013 * 180.02562 * 24 23 22 26 26 O 1.35725 * 119.65974 * 179.97438 * 25 24 23 27 27 H 0.97003 * 119.99473 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99389 * 0.02562 * 9 7 2 29 29 H 1.08996 * 109.47048 * 59.99619 * 12 10 9 30 30 H 1.09002 * 109.47080 * 299.99682 * 12 10 9 31 31 H 1.08002 * 120.24400 * 0.02562 * 17 16 14 32 32 H 1.07993 * 120.16176 * 359.96003 * 19 18 17 33 33 H 1.08003 * 119.51108 * 179.97438 * 20 19 18 34 34 H 1.08003 * 119.48718 * 179.97438 * 21 20 19 35 35 H 1.07997 * 120.14241 * 179.97438 * 22 21 20 36 36 H 1.08006 * 120.00325 * 0.02811 * 24 23 22 37 37 H 0.96698 * 114.00143 * 89.99890 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2436 -4.8629 -0.0011 13 8 2.1872 -5.9666 -0.0004 14 6 1.6721 -7.2118 -0.0013 15 8 0.4676 -7.3710 -0.0022 16 6 2.5703 -8.3812 -0.0012 17 6 3.9439 -8.1946 -0.0007 18 6 4.7925 -9.3103 0.0053 19 6 6.1913 -9.1580 0.0124 20 6 6.9890 -10.2602 0.0186 21 6 6.4413 -11.5422 0.0176 22 6 5.0933 -11.7291 0.0108 23 6 4.2352 -10.6154 0.0053 24 6 2.8401 -10.7777 -0.0012 25 6 2.0263 -9.6833 -0.0070 26 8 0.6791 -9.8482 -0.0137 27 1 -0.4849 0.8401 -0.0004 28 1 0.3534 -2.3906 -0.0005 29 1 0.6173 -4.9204 -0.8913 30 1 0.6167 -4.9209 0.8887 31 1 4.3574 -7.1969 0.0000 32 1 6.6297 -8.1710 0.0126 33 1 8.0623 -10.1402 0.0236 34 1 7.0970 -12.4004 0.0222 35 1 4.6844 -12.7287 0.0097 36 1 2.4117 -11.7692 -0.0015 37 1 0.2841 -9.8947 0.8676 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731238488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:35 Heat of formation + Delta-G solvation = -138.150458 kcal Electronic energy + Delta-G solvation = -24439.288188 eV Core-core repulsion = 20532.023104 eV Total energy + Delta-G solvation = -3907.265084 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.04345 -41.08464 -40.04083 -39.08135 -37.36100 -36.29488 -36.04360 -33.76278 -33.43633 -31.57875 -30.05642 -29.68944 -26.75982 -25.55762 -24.10737 -23.05209 -22.41939 -21.46250 -20.09888 -19.84542 -19.26483 -18.42869 -17.79364 -17.62744 -17.53924 -16.98763 -16.65109 -16.17316 -15.89079 -15.80368 -15.65620 -15.26918 -14.97527 -14.58851 -14.39357 -14.27150 -13.96081 -13.63908 -13.57736 -13.54884 -12.95644 -12.49664 -12.47815 -12.22738 -12.11473 -12.06788 -11.93335 -11.90818 -11.60325 -11.36941 -11.04008 -10.54222 -10.13959 -9.67392 -8.91955 -8.54162 -6.04990 -0.84279 -0.33147 0.84082 1.20373 1.26957 1.33424 1.43362 1.57990 1.83733 2.00660 2.28312 2.95963 2.99425 3.11224 3.14064 3.45190 3.58125 3.87586 3.89820 3.99396 4.11563 4.13152 4.18588 4.20482 4.35197 4.41868 4.68065 4.76745 4.85208 4.99303 5.13743 5.15777 5.23490 5.35549 5.51366 5.54660 5.60403 5.86877 5.95938 6.42532 6.57052 6.74118 7.00679 7.37107 7.90184 8.63181 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.002649 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.197362 B =10567.469386 C =11869.987952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 1.000 3.000 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.085 0.915 9 N -0.557 5.557 10 C 0.438 3.562 11 O -0.616 6.616 12 C 0.072 3.928 13 O -0.341 6.341 14 C 0.502 3.498 15 O -0.512 6.512 16 C -0.172 4.172 17 C -0.016 4.016 18 C -0.095 4.095 19 C -0.105 4.105 20 C -0.120 4.120 21 C -0.092 4.092 22 C -0.120 4.120 23 C -0.023 4.023 24 C -0.136 4.136 25 C 0.150 3.850 26 O -0.493 6.493 27 H 0.281 0.719 28 H 0.400 0.600 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.170 0.830 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.664 -25.038 1.790 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.822 3.178 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.103 0.897 9 N -0.195 5.195 10 C 0.224 3.776 11 O -0.503 6.503 12 C -0.005 4.005 13 O -0.257 6.257 14 C 0.347 3.653 15 O -0.402 6.402 16 C -0.174 4.174 17 C -0.034 4.034 18 C -0.095 4.095 19 C -0.123 4.123 20 C -0.138 4.138 21 C -0.110 4.110 22 C -0.138 4.138 23 C -0.023 4.023 24 C -0.154 4.154 25 C 0.104 3.896 26 O -0.306 6.306 27 H 0.091 0.909 28 H 0.234 0.766 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.160 0.840 32 H 0.156 0.844 33 H 0.170 0.830 34 H 0.177 0.823 35 H 0.177 0.823 36 H 0.188 0.812 37 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 8.996 -24.881 1.196 26.484 hybrid contribution -0.811 1.381 0.438 1.661 sum 8.185 -23.500 1.633 24.938 Atomic orbital electron populations 1.69688 1.06995 1.29709 1.49173 1.26160 0.96606 1.02665 0.95621 0.84779 0.78076 0.76457 0.78462 1.19480 1.19452 1.19377 1.19764 0.92947 0.83292 1.50596 0.89706 1.41742 1.09579 1.04177 1.63957 1.20023 0.88070 0.85264 0.84208 1.90517 1.15332 1.87671 1.56775 1.22538 0.90179 0.82401 1.05366 1.86583 1.40499 1.14667 1.83903 1.21495 0.87599 0.83236 0.72921 1.90815 1.16301 1.86712 1.46391 1.19580 0.93336 0.90744 1.13744 1.21847 0.91329 0.99971 0.90271 1.18270 0.94764 0.92430 1.04023 1.21375 0.91322 1.01026 0.98534 1.21297 1.01540 0.92156 0.98800 1.21419 0.95495 0.98213 0.95856 1.21386 0.93599 0.98295 1.00511 1.18339 0.93504 0.93256 0.97177 1.21358 0.91841 0.99283 1.02905 1.18002 0.84336 0.89544 0.97670 1.84755 1.16046 1.94656 1.35123 0.90936 0.76562 0.87765 0.87412 0.84009 0.84376 0.83038 0.82313 0.82302 0.81247 0.73178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.04 13.05 21.66 0.28 -48.76 16 2 C -0.01 -0.52 5.50 84.92 0.47 -0.06 16 3 Si 1.00 42.25 29.55 68.60 2.03 44.28 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.34 -19.09 9.68 84.04 0.81 -18.27 16 8 H 0.08 5.09 7.16 -2.91 -0.02 5.07 16 9 N -0.56 -29.06 5.29 -306.99 -1.62 -30.68 16 10 C 0.44 21.87 7.86 87.66 0.69 22.56 16 11 O -0.62 -35.43 16.08 15.71 0.25 -35.18 16 12 C 0.07 2.87 5.95 71.24 0.42 3.29 16 13 O -0.34 -13.55 8.96 -50.25 -0.45 -14.00 16 14 C 0.50 17.83 7.88 70.25 0.55 18.39 16 15 O -0.51 -19.21 14.88 26.90 0.40 -18.81 16 16 C -0.17 -5.10 5.88 -20.05 -0.12 -5.22 16 17 C -0.02 -0.43 9.35 22.83 0.21 -0.22 16 18 C -0.09 -2.10 5.74 -21.29 -0.12 -2.22 16 19 C -0.10 -1.87 9.76 22.37 0.22 -1.66 16 20 C -0.12 -1.51 9.95 22.04 0.22 -1.29 16 21 C -0.09 -0.94 9.95 22.05 0.22 -0.72 16 22 C -0.12 -1.47 9.76 22.35 0.22 -1.25 16 23 C -0.02 -0.42 5.75 -21.25 -0.12 -0.54 16 24 C -0.14 -2.53 9.64 22.38 0.22 -2.31 16 25 C 0.15 3.71 6.65 22.55 0.15 3.86 16 26 O -0.49 -12.06 11.48 -69.31 -0.80 -12.85 16 27 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 28 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 29 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 30 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 31 H 0.14 4.08 7.57 -2.91 -0.02 4.06 16 32 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.16 0.59 8.06 -2.91 -0.02 0.56 16 35 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 36 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.41 6.70 9.06 -74.06 -0.67 6.03 16 Total: -1.00 -74.90 336.46 3.88 -71.02 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.25 Total: 30.65 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 4.04 Total: 14.34 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -1.34 Total: -79.44 kcal Atomic # 8 Polarization: -80.25 SS G_CDS: -0.59 Total: -80.84 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -74.90 3.88 -71.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731238488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.132 kcal (2) G-P(sol) polarization free energy of solvation -74.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds