Wall clock time and date at job start Tue Mar 31 2020 11:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86796 * 119.99845 * 2 1 4 4 H 1.48509 * 109.47189 * 270.00142 * 3 2 1 5 5 H 1.48498 * 109.47175 * 30.00069 * 3 2 1 6 6 H 1.48505 * 109.47102 * 150.00616 * 3 2 1 7 7 C 1.38652 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00049 * 359.97438 * 7 2 1 9 9 O 1.34832 * 120.00135 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00115 * 185.05322 * 9 7 2 11 11 C 1.38874 * 120.06836 * 354.46023 * 10 9 7 12 12 C 1.38105 * 119.92988 * 180.02562 * 11 10 9 13 13 C 1.38297 * 120.06829 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.93174 * 179.97438 * 13 12 11 15 15 O 1.45205 * 109.46882 * 90.00223 * 14 13 12 16 16 C 1.34692 * 116.99605 * 180.02562 * 15 14 13 17 17 O 1.21454 * 120.00304 * 359.97438 * 16 15 14 18 18 C 1.47873 * 119.99804 * 179.97438 * 16 15 14 19 19 C 1.39969 * 120.91724 * 180.02562 * 18 16 15 20 20 C 1.38000 * 119.00165 * 180.02562 * 19 18 16 21 21 N 1.31995 * 120.89674 * 359.97438 * 20 19 18 22 22 O 1.41602 * 118.98083 * 179.97438 * 21 20 19 23 23 C 1.31992 * 122.03948 * 0.28000 * 21 20 19 24 24 C 1.38007 * 120.88983 * 359.44800 * 23 21 20 25 25 C 1.38301 * 120.13887 * 0.25117 * 13 12 11 26 26 C 1.38107 * 120.07085 * 359.44968 * 25 13 12 27 27 H 0.97003 * 119.99923 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03839 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.96311 * 180.02562 * 12 11 10 30 30 H 1.08999 * 109.47001 * 330.00179 * 14 13 12 31 31 H 1.08998 * 109.47440 * 209.99726 * 14 13 12 32 32 H 1.07997 * 120.50146 * 0.02562 * 19 18 16 33 33 H 1.07999 * 119.55272 * 179.97438 * 20 19 18 34 34 H 1.07991 * 119.55541 * 179.71975 * 23 21 20 35 35 H 1.07999 * 120.49673 * 180.25283 * 24 23 21 36 36 H 1.08005 * 119.97013 * 179.70897 * 25 13 12 37 37 H 1.07992 * 120.03971 * 180.26817 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5472 1.4402 0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3572 -1.2008 0.0000 10 6 3.9735 -2.4056 -0.1071 11 6 3.2235 -3.5743 -0.0951 12 6 3.8535 -4.7985 -0.2037 13 6 5.2298 -4.8612 -0.3238 14 6 5.9142 -6.1987 -0.4416 15 8 6.0178 -6.5677 -1.8421 16 6 6.6087 -7.7452 -2.1221 17 8 7.0264 -8.4445 -1.2211 18 6 6.7489 -8.1867 -3.5264 19 6 7.3592 -9.4069 -3.8391 20 6 7.4696 -9.7798 -5.1632 21 7 7.0089 -9.0039 -6.1265 22 8 7.1442 -9.4261 -7.4714 23 6 6.4314 -7.8438 -5.8755 24 6 6.2746 -7.3962 -4.5795 25 6 5.9800 -3.6993 -0.3304 26 6 5.3554 -2.4718 -0.2283 27 1 -0.4850 0.8401 0.0004 28 1 2.1487 -3.5260 -0.0009 29 1 3.2708 -5.7077 -0.1948 30 1 5.3334 -6.9520 0.0907 31 1 6.9121 -6.1357 -0.0077 32 1 7.7380 -10.0469 -3.0561 33 1 7.9393 -10.7192 -5.4147 34 1 6.0729 -7.2388 -6.6950 35 1 5.7975 -6.4479 -4.3811 36 1 7.0550 -3.7517 -0.4196 37 1 5.9413 -1.5647 -0.2379 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733380898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:28 Heat of formation + Delta-G solvation = -17.743921 kcal Electronic energy + Delta-G solvation = -23905.222570 eV Core-core repulsion = 20003.178706 eV Total energy + Delta-G solvation = -3902.043865 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.91211 -40.51622 -39.36238 -37.38949 -36.39352 -35.11482 -32.62758 -32.49370 -31.10521 -30.49588 -30.34258 -26.83935 -25.68857 -24.91472 -24.52374 -22.31995 -21.85188 -20.72718 -19.04300 -18.20769 -18.10086 -17.56431 -17.33348 -16.83147 -16.69280 -16.17434 -15.78728 -15.03484 -15.00331 -14.72271 -14.28006 -14.03250 -13.97293 -13.43278 -13.36707 -13.00025 -12.87632 -12.64085 -12.42770 -12.33482 -11.66096 -11.64179 -11.27147 -11.01166 -10.92939 -10.88852 -10.74672 -10.31692 -10.29445 -9.80449 -9.57079 -9.07821 -9.03615 -8.48723 -7.61350 -6.57898 -4.24954 -0.46646 0.03674 1.59060 1.82884 1.93380 2.03432 2.43147 2.74077 3.11866 3.15914 3.29147 3.74024 3.89854 3.97100 4.02592 4.09977 4.28791 4.39102 4.63820 4.82047 4.88307 4.91487 4.94208 4.97483 5.13000 5.18286 5.35491 5.42581 5.53525 5.92268 6.05708 6.10412 6.19431 6.32997 6.54195 6.56068 6.79316 6.98364 7.07115 7.26761 7.38870 7.61688 7.85356 8.76088 9.35366 10.48877 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.020381 B = 0.002357 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.509963 B =11875.916538 C =12617.197285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.393 4.393 8 H 0.109 0.891 9 O -0.209 6.209 10 C 0.171 3.829 11 C -0.226 4.226 12 C -0.044 4.044 13 C -0.202 4.202 14 C 0.130 3.870 15 O -0.341 6.341 16 C 0.507 3.493 17 O -0.495 6.495 18 C -0.082 4.082 19 C -0.061 4.061 20 C 0.064 3.936 21 N -0.103 5.103 22 O -0.534 6.534 23 C 0.066 3.934 24 C -0.063 4.063 25 C -0.048 4.048 26 C -0.196 4.196 27 H 0.282 0.718 28 H 0.136 0.864 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.177 0.823 33 H 0.191 0.809 34 H 0.192 0.808 35 H 0.182 0.818 36 H 0.115 0.885 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.035 -14.022 -3.354 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.468 4.468 8 H 0.126 0.874 9 O -0.112 6.112 10 C 0.117 3.883 11 C -0.245 4.245 12 C -0.062 4.062 13 C -0.203 4.203 14 C 0.059 3.941 15 O -0.258 6.258 16 C 0.351 3.649 17 O -0.384 6.384 18 C -0.091 4.091 19 C -0.080 4.080 20 C -0.081 4.081 21 N 0.220 4.780 22 O -0.592 6.592 23 C -0.079 4.079 24 C -0.081 4.081 25 C -0.067 4.067 26 C -0.215 4.215 27 H 0.092 0.908 28 H 0.154 0.846 29 H 0.130 0.870 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.195 0.805 33 H 0.208 0.792 34 H 0.209 0.791 35 H 0.200 0.800 36 H 0.133 0.867 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.029 -13.927 -3.397 19.371 hybrid contribution 0.065 0.599 -0.012 0.603 sum 13.094 -13.327 -3.409 18.992 Atomic orbital electron populations 1.69640 1.05638 1.28833 1.46734 1.24505 0.95061 0.99013 0.95325 0.86168 0.80337 0.81229 0.79128 1.19705 1.20604 1.18282 1.20804 0.76665 0.96800 1.52544 0.87390 1.83576 1.22875 1.25868 1.78917 1.19200 0.91754 0.85510 0.91832 1.21267 1.01333 0.91638 1.10242 1.20678 0.93056 0.97025 0.95487 1.18863 0.93814 0.92263 1.15399 1.21851 1.00877 0.94745 0.76677 1.86682 1.70690 1.35308 1.33077 1.20678 0.75527 0.80325 0.88417 1.90872 1.45438 1.54608 1.47451 1.19800 1.01319 0.95958 0.92056 1.21970 0.94776 0.95135 0.96117 1.22643 0.99514 0.99322 0.86583 1.43432 1.15735 1.07242 1.11606 1.97694 1.89060 1.84960 0.87451 1.22764 0.97349 0.88660 0.99157 1.22312 0.95012 1.01122 0.89667 1.20512 0.98466 0.91129 0.96574 1.20203 0.91954 0.97866 1.11515 0.90777 0.84592 0.86980 0.90603 0.90621 0.80530 0.79159 0.79061 0.80026 0.86656 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.96 13.96 55.48 0.77 -23.19 16 2 C 0.07 1.74 5.49 -17.52 -0.10 1.64 16 3 Si 0.91 20.46 28.62 -169.99 -4.86 15.60 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.26 -5.85 7.11 56.52 0.40 -5.44 16 7 C -0.39 -10.39 9.95 30.89 0.31 -10.08 16 8 H 0.11 2.90 5.44 -52.49 -0.29 2.62 16 9 O -0.21 -5.11 8.59 0.04 0.00 -5.11 16 10 C 0.17 3.58 6.65 -39.11 -0.26 3.32 16 11 C -0.23 -4.37 9.17 -39.40 -0.36 -4.73 16 12 C -0.04 -0.70 9.69 -39.61 -0.38 -1.08 16 13 C -0.20 -2.89 5.52 -104.58 -0.58 -3.47 16 14 C 0.13 1.50 5.60 36.01 0.20 1.70 16 15 O -0.34 -3.70 9.56 -40.47 -0.39 -4.08 16 16 C 0.51 4.90 7.92 34.67 0.27 5.17 16 17 O -0.50 -5.75 16.23 -19.23 -0.31 -6.06 16 18 C -0.08 -0.59 5.91 -104.66 -0.62 -1.20 16 19 C -0.06 -0.34 9.68 -39.02 -0.38 -0.72 16 20 C 0.06 0.44 10.67 -17.57 -0.19 0.25 16 21 N -0.10 -1.07 3.58 -13.30 -0.05 -1.12 16 22 O -0.53 -9.02 20.04 -11.47 -0.23 -9.25 16 23 C 0.07 0.49 10.67 -17.57 -0.19 0.30 16 24 C -0.06 -0.38 9.70 -39.02 -0.38 -0.76 16 25 C -0.05 -0.71 9.69 -39.61 -0.38 -1.09 16 26 C -0.20 -3.45 9.99 -39.39 -0.39 -3.84 16 27 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.14 2.79 5.64 -52.49 -0.30 2.49 16 29 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 31 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.18 0.64 7.74 -52.49 -0.41 0.23 16 33 H 0.19 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.19 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.18 0.86 7.71 -52.49 -0.40 0.45 16 36 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -34.61 339.48 -6.85 -41.46 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -3.48 Total: 1.23 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -3.42 Total: -14.59 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.73 Total: -24.31 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.93 Total: -24.51 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.86 Total: 15.60 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.61 -6.85 -41.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733380898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.717 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds