Wall clock time and date at job start Tue Mar 31 2020 11:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31391 * 1 3 3 Si 1.86805 * 119.99848 * 2 1 4 4 H 1.48495 * 109.46994 * 269.99982 * 3 2 1 5 5 H 1.48501 * 109.47069 * 30.00180 * 3 2 1 6 6 H 1.48501 * 109.47133 * 149.99761 * 3 2 1 7 7 C 1.39008 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99936 * 159.50006 * 7 2 1 9 9 N 1.36910 * 119.99936 * 339.50388 * 7 2 1 10 10 C 1.46498 * 119.99736 * 331.11754 * 9 7 2 11 11 C 1.50695 * 109.47221 * 97.00015 * 10 9 7 12 12 O 1.20818 * 120.00412 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99729 * 179.97438 * 11 10 9 14 14 C 1.34773 * 119.99988 * 151.11436 * 9 7 2 15 15 O 1.21657 * 120.00353 * 4.71504 * 14 9 7 16 16 C 1.47217 * 119.99876 * 184.72138 * 14 9 7 17 17 C 1.40797 * 119.81813 * 305.28529 * 16 14 9 18 18 C 1.35567 * 120.91821 * 180.26107 * 17 16 14 19 19 C 1.40888 * 120.22620 * 359.45893 * 18 17 16 20 20 C 1.40424 * 120.98719 * 180.25061 * 19 18 17 21 21 C 1.36210 * 119.73279 * 180.02562 * 20 19 18 22 22 C 1.39281 * 120.97257 * 0.04074 * 21 20 19 23 23 C 1.36199 * 120.90564 * 359.95534 * 22 21 20 24 24 C 1.40436 * 119.67929 * 0.02562 * 23 22 21 25 25 C 1.39367 * 119.82325 * 125.00446 * 16 14 9 26 26 O 1.35455 * 120.36034 * 0.04093 * 25 16 14 27 27 H 0.96996 * 119.99845 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46836 * 217.00021 * 10 9 7 29 29 H 1.09000 * 109.47317 * 336.99254 * 10 9 7 30 30 H 0.96697 * 117.00115 * 179.97438 * 13 11 10 31 31 H 1.07996 * 119.54260 * 359.97438 * 17 16 14 32 32 H 1.07997 * 119.88527 * 179.72833 * 18 17 16 33 33 H 1.08005 * 120.13379 * 0.04849 * 20 19 18 34 34 H 1.08000 * 119.51261 * 180.02562 * 21 20 19 35 35 H 1.08003 * 119.54310 * 179.97438 * 22 21 20 36 36 H 1.08002 * 120.16149 * 180.02562 * 23 22 21 37 37 H 0.96697 * 114.00051 * 269.97790 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4954 2.0465 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5454 1.4403 0.7001 7 6 2.0090 -1.2038 0.0005 8 1 3.0377 -1.2335 -0.3270 9 7 1.3896 -2.3518 0.4162 10 6 0.3123 -2.2853 1.4068 11 6 -1.0197 -2.3001 0.7022 12 8 -1.0646 -2.3595 -0.5037 13 8 -2.1563 -2.2472 1.4143 14 6 1.7708 -3.5430 -0.0860 15 8 2.7210 -3.6081 -0.8429 16 6 1.0373 -4.7654 0.2814 17 6 0.8651 -5.0973 1.6388 18 6 0.1981 -6.2202 2.0021 19 6 -0.3460 -7.0711 1.0198 20 6 -1.0444 -8.2354 1.3783 21 6 -1.5595 -9.0401 0.4074 22 6 -1.4037 -8.7266 -0.9407 23 6 -0.7325 -7.6057 -1.3252 24 6 -0.1883 -6.7526 -0.3514 25 6 0.5119 -5.5846 -0.7162 26 8 0.6733 -5.2628 -2.0220 27 1 -0.4850 0.8400 -0.0004 28 1 0.3795 -3.1440 2.0748 29 1 0.4071 -1.3666 1.9856 30 1 -2.9862 -2.2588 0.9182 31 1 1.2741 -4.4509 2.4011 32 1 0.0796 -6.4610 3.0482 33 1 -1.1730 -8.4917 2.4196 34 1 -2.0963 -9.9345 0.6872 35 1 -1.8213 -9.3813 -1.6913 36 1 -0.6192 -7.3740 -2.3740 37 1 -0.0343 -4.7103 -2.3813 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739086486.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:23 Heat of formation + Delta-G solvation = -97.207700 kcal Electronic energy + Delta-G solvation = -26798.274273 eV Core-core repulsion = 22892.784601 eV Total energy + Delta-G solvation = -3905.489673 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.54638 -39.32442 -38.21893 -37.08385 -35.62264 -35.20811 -34.41824 -31.95664 -31.64225 -30.23909 -28.61564 -27.70855 -25.34294 -23.39041 -23.10278 -21.62677 -21.16530 -19.68723 -18.28677 -17.52944 -17.20622 -16.80192 -16.49759 -16.03438 -15.60730 -15.45059 -14.71302 -14.67768 -14.42005 -14.12579 -14.10429 -13.71807 -13.30702 -13.12291 -12.94775 -12.72659 -12.09392 -11.92163 -11.68638 -11.63812 -11.40437 -11.11929 -10.99575 -10.79488 -10.51110 -10.45711 -10.35322 -10.20409 -9.62326 -9.56044 -9.10722 -8.65560 -8.39976 -7.83394 -7.57683 -6.48183 -4.00763 0.60987 1.03667 2.09961 2.92756 3.13018 3.20707 3.26692 3.48129 3.61842 4.02749 4.13737 4.26412 4.47960 4.62947 4.77168 4.89560 4.94532 5.02514 5.21549 5.25667 5.43164 5.48909 5.56892 5.78993 5.84196 6.01881 6.12641 6.25318 6.26224 6.29855 6.45186 6.48866 6.62058 6.70162 6.85501 7.03171 7.44887 7.51256 7.97514 8.06472 8.31802 9.01620 9.02809 9.22694 9.79357 10.58355 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.021860 B = 0.004682 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.544687 B = 5978.422849 C = 6325.809211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.035 3.965 3 Si 0.927 3.073 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.105 0.895 9 N -0.422 5.422 10 C 0.134 3.866 11 C 0.485 3.515 12 O -0.490 6.490 13 O -0.538 6.538 14 C 0.506 3.494 15 O -0.553 6.553 16 C -0.127 4.127 17 C -0.086 4.086 18 C -0.125 4.125 19 C -0.035 4.035 20 C -0.110 4.110 21 C -0.117 4.117 22 C -0.129 4.129 23 C -0.089 4.089 24 C -0.076 4.076 25 C 0.163 3.837 26 O -0.477 6.477 27 H 0.270 0.730 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.392 0.608 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.170 -11.601 6.076 14.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.170 4.170 3 Si 0.753 3.247 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.122 0.878 9 N -0.141 5.141 10 C 0.008 3.992 11 C 0.324 3.676 12 O -0.374 6.374 13 O -0.349 6.349 14 C 0.294 3.706 15 O -0.434 6.434 16 C -0.131 4.131 17 C -0.105 4.105 18 C -0.143 4.143 19 C -0.036 4.036 20 C -0.128 4.128 21 C -0.135 4.135 22 C -0.147 4.147 23 C -0.107 4.107 24 C -0.077 4.077 25 C 0.116 3.884 26 O -0.288 6.288 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.132 0.868 30 H 0.248 0.752 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.147 0.853 37 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -5.936 -11.782 5.586 14.327 hybrid contribution -0.921 1.332 -0.500 1.695 sum -6.857 -10.450 5.086 13.494 Atomic orbital electron populations 1.69885 1.06061 1.27763 1.46461 1.25399 0.95273 1.00122 0.96255 0.85929 0.79478 0.80607 0.78705 1.20231 1.20795 1.19171 1.19593 0.96922 0.83116 1.44198 0.87777 1.43282 1.29730 1.05661 1.35473 1.20882 0.82982 1.04196 0.91148 1.23649 0.85471 0.71402 0.87030 1.90563 1.86854 1.44268 1.15720 1.84511 1.17234 1.87296 1.45869 1.17791 0.86864 0.83034 0.82889 1.90676 1.29371 1.85991 1.37377 1.20678 1.01671 0.97393 0.93344 1.20944 0.97972 0.96899 0.94642 1.20829 0.99881 0.94818 0.98791 1.17983 0.98162 0.95489 0.91943 1.20973 0.98187 0.94103 0.99550 1.20826 0.99997 0.99630 0.93025 1.20791 1.00211 0.97589 0.96113 1.20991 0.96424 0.94043 0.99277 1.18331 0.99678 0.96214 0.93440 1.18332 0.94621 0.91579 0.83835 1.84653 1.50969 1.72382 1.20778 0.92018 0.89179 0.86799 0.75203 0.84756 0.85141 0.85547 0.86203 0.86139 0.85259 0.74822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.58 9.25 55.50 0.51 -22.07 16 2 C 0.03 0.89 4.82 -17.45 -0.08 0.80 16 3 Si 0.93 20.12 29.60 -169.99 -5.03 15.09 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.31 -8.43 9.10 -15.00 -0.14 -8.57 16 8 H 0.10 2.95 7.54 -52.49 -0.40 2.56 16 9 N -0.42 -10.54 2.15 -117.39 -0.25 -10.79 16 10 C 0.13 2.85 4.93 -5.20 -0.03 2.82 16 11 C 0.49 10.53 6.16 36.00 0.22 10.75 16 12 O -0.49 -12.30 15.96 -18.74 -0.30 -12.59 16 13 O -0.54 -9.52 13.42 -39.26 -0.53 -10.05 16 14 C 0.51 12.76 6.47 -12.61 -0.08 12.68 16 15 O -0.55 -16.08 16.50 1.47 0.02 -16.06 16 16 C -0.13 -2.64 4.84 -104.86 -0.51 -3.15 16 17 C -0.09 -1.44 7.71 -39.57 -0.30 -1.74 16 18 C -0.13 -1.76 9.72 -39.53 -0.38 -2.14 16 19 C -0.04 -0.52 5.75 -106.77 -0.61 -1.14 16 20 C -0.11 -1.30 9.75 -39.49 -0.39 -1.69 16 21 C -0.12 -1.27 9.95 -39.92 -0.40 -1.67 16 22 C -0.13 -1.51 9.95 -39.93 -0.40 -1.91 16 23 C -0.09 -1.27 9.56 -39.49 -0.38 -1.65 16 24 C -0.08 -1.27 5.75 -106.73 -0.61 -1.88 16 25 C 0.16 3.23 6.71 -38.12 -0.26 2.97 16 26 O -0.48 -9.65 11.89 -21.81 -0.26 -9.91 16 27 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.09 1.59 4.09 -51.93 -0.21 1.37 16 29 H 0.11 2.44 7.15 -51.93 -0.37 2.06 16 30 H 0.39 5.40 9.10 45.56 0.41 5.81 16 31 H 0.13 1.98 6.56 -52.49 -0.34 1.64 16 32 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.13 1.72 7.61 -52.49 -0.40 1.32 16 37 H 0.39 6.93 9.06 45.56 0.41 7.34 16 LS Contribution 322.91 15.07 4.87 4.87 Total: -1.00 -35.25 322.91 -7.03 -42.28 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -1.72 Total: 14.76 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -4.34 Total: 4.48 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.26 Total: -32.86 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -1.06 Total: -48.61 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.25 -7.03 -42.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739086486.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.924 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds