Wall clock time and date at job start Tue Mar 31 2020 11:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31391 * 1 3 3 Si 1.86805 * 119.99848 * 2 1 4 4 H 1.48495 * 109.46994 * 269.99982 * 3 2 1 5 5 H 1.48501 * 109.47069 * 30.00180 * 3 2 1 6 6 H 1.48501 * 109.47133 * 149.99761 * 3 2 1 7 7 C 1.39008 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99936 * 159.50006 * 7 2 1 9 9 N 1.36910 * 119.99936 * 339.50388 * 7 2 1 10 10 C 1.46498 * 119.99736 * 331.11754 * 9 7 2 11 11 C 1.50695 * 109.47221 * 97.00015 * 10 9 7 12 12 O 1.20818 * 120.00412 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99729 * 179.97438 * 11 10 9 14 14 C 1.34773 * 119.99988 * 151.11436 * 9 7 2 15 15 O 1.21657 * 120.00353 * 4.71504 * 14 9 7 16 16 C 1.47217 * 119.99876 * 184.72138 * 14 9 7 17 17 C 1.40797 * 119.81813 * 305.28529 * 16 14 9 18 18 C 1.35567 * 120.91821 * 180.26107 * 17 16 14 19 19 C 1.40888 * 120.22620 * 359.45893 * 18 17 16 20 20 C 1.40424 * 120.98719 * 180.25061 * 19 18 17 21 21 C 1.36210 * 119.73279 * 180.02562 * 20 19 18 22 22 C 1.39281 * 120.97257 * 0.04074 * 21 20 19 23 23 C 1.36199 * 120.90564 * 359.95534 * 22 21 20 24 24 C 1.40436 * 119.67929 * 0.02562 * 23 22 21 25 25 C 1.39367 * 119.82325 * 125.00446 * 16 14 9 26 26 O 1.35455 * 120.36034 * 0.04093 * 25 16 14 27 27 H 0.96996 * 119.99845 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46836 * 217.00021 * 10 9 7 29 29 H 1.09000 * 109.47317 * 336.99254 * 10 9 7 30 30 H 0.96697 * 117.00115 * 179.97438 * 13 11 10 31 31 H 1.07996 * 119.54260 * 359.97438 * 17 16 14 32 32 H 1.07997 * 119.88527 * 179.72833 * 18 17 16 33 33 H 1.08005 * 120.13379 * 0.04849 * 20 19 18 34 34 H 1.08000 * 119.51261 * 180.02562 * 21 20 19 35 35 H 1.08003 * 119.54310 * 179.97438 * 22 21 20 36 36 H 1.08002 * 120.16149 * 180.02562 * 23 22 21 37 37 H 0.96697 * 114.00051 * 269.97790 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4954 2.0465 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5454 1.4403 0.7001 7 6 2.0090 -1.2038 0.0005 8 1 3.0377 -1.2335 -0.3270 9 7 1.3896 -2.3518 0.4162 10 6 0.3123 -2.2853 1.4068 11 6 -1.0197 -2.3001 0.7022 12 8 -1.0646 -2.3595 -0.5037 13 8 -2.1563 -2.2472 1.4143 14 6 1.7708 -3.5430 -0.0860 15 8 2.7210 -3.6081 -0.8429 16 6 1.0373 -4.7654 0.2814 17 6 0.8651 -5.0973 1.6388 18 6 0.1981 -6.2202 2.0021 19 6 -0.3460 -7.0711 1.0198 20 6 -1.0444 -8.2354 1.3783 21 6 -1.5595 -9.0401 0.4074 22 6 -1.4037 -8.7266 -0.9407 23 6 -0.7325 -7.6057 -1.3252 24 6 -0.1883 -6.7526 -0.3514 25 6 0.5119 -5.5846 -0.7162 26 8 0.6733 -5.2628 -2.0220 27 1 -0.4850 0.8400 -0.0004 28 1 0.3795 -3.1440 2.0748 29 1 0.4071 -1.3666 1.9856 30 1 -2.9862 -2.2588 0.9182 31 1 1.2741 -4.4509 2.4011 32 1 0.0796 -6.4610 3.0482 33 1 -1.1730 -8.4917 2.4196 34 1 -2.0963 -9.9345 0.6872 35 1 -1.8213 -9.3813 -1.6913 36 1 -0.6192 -7.3740 -2.3740 37 1 -0.0343 -4.7103 -2.3813 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739086486.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:22 Heat of formation + Delta-G solvation = -122.887947 kcal Electronic energy + Delta-G solvation = -26799.387852 eV Core-core repulsion = 22892.784601 eV Total energy + Delta-G solvation = -3906.603252 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.90489 -40.90422 -39.87857 -38.53293 -36.98013 -36.86275 -36.26385 -33.85014 -32.77701 -31.49624 -29.85109 -29.46407 -27.14055 -24.80303 -24.25036 -22.82592 -22.78506 -21.32070 -19.61055 -19.11874 -18.88508 -18.50217 -17.84443 -17.41023 -17.33068 -16.99173 -16.29457 -16.15724 -15.83973 -15.81909 -15.43022 -14.85732 -14.81532 -14.65034 -14.20292 -14.08986 -13.67617 -13.57461 -13.33472 -13.09345 -12.79913 -12.64657 -12.51356 -12.15980 -12.08361 -12.05428 -11.93012 -11.61225 -11.40220 -11.00718 -10.74048 -10.53853 -9.82155 -9.57587 -8.74998 -8.45080 -6.06963 -0.54788 -0.11331 0.96189 1.34617 1.40866 1.54560 1.65384 1.82101 1.97759 2.29593 2.56203 2.89056 2.97112 3.01458 3.20428 3.70616 3.72130 3.93446 4.04096 4.20820 4.25022 4.36123 4.41882 4.51038 4.59494 4.65049 4.88438 4.93473 5.06906 5.14041 5.21098 5.35084 5.40388 5.58013 5.59369 5.74581 5.97091 6.02227 6.04837 6.35633 6.61497 7.04000 7.21961 7.47739 7.87075 8.59554 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.021860 B = 0.004682 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.544687 B = 5978.422849 C = 6325.809211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.005 3.995 3 Si 0.992 3.008 4 H -0.284 1.284 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.350 4.350 8 H 0.075 0.925 9 N -0.429 5.429 10 C 0.132 3.868 11 C 0.492 3.508 12 O -0.532 6.532 13 O -0.521 6.521 14 C 0.498 3.502 15 O -0.614 6.614 16 C -0.154 4.154 17 C -0.111 4.111 18 C -0.095 4.095 19 C -0.051 4.051 20 C -0.104 4.104 21 C -0.110 4.110 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.092 4.092 25 C 0.135 3.865 26 O -0.498 6.498 27 H 0.273 0.727 28 H 0.128 0.872 29 H 0.111 0.889 30 H 0.412 0.588 31 H 0.148 0.852 32 H 0.180 0.820 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.151 0.849 36 H 0.123 0.877 37 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.689 -13.954 8.913 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.198 4.198 3 Si 0.815 3.185 4 H -0.210 1.210 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.477 4.477 8 H 0.093 0.907 9 N -0.148 5.148 10 C 0.007 3.993 11 C 0.334 3.666 12 O -0.419 6.419 13 O -0.334 6.334 14 C 0.289 3.711 15 O -0.499 6.499 16 C -0.157 4.157 17 C -0.129 4.129 18 C -0.113 4.113 19 C -0.051 4.051 20 C -0.121 4.121 21 C -0.127 4.127 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.093 4.093 25 C 0.089 3.911 26 O -0.309 6.309 27 H 0.083 0.917 28 H 0.145 0.855 29 H 0.129 0.871 30 H 0.271 0.729 31 H 0.166 0.834 32 H 0.197 0.803 33 H 0.185 0.815 34 H 0.180 0.820 35 H 0.169 0.831 36 H 0.141 0.859 37 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -8.517 -14.139 8.475 18.555 hybrid contribution -0.318 1.822 -1.384 2.310 sum -8.835 -12.318 7.091 16.735 Atomic orbital electron populations 1.69973 1.06917 1.28571 1.46023 1.26137 0.96093 1.02524 0.95072 0.84982 0.78632 0.76701 0.78232 1.21046 1.18855 1.18696 1.19521 0.96516 0.85013 1.46671 0.90715 1.43375 1.30368 1.05101 1.35909 1.21075 0.81988 1.05652 0.90597 1.23596 0.86390 0.70255 0.86400 1.90556 1.87561 1.46284 1.17504 1.84433 1.17308 1.86475 1.45176 1.18529 0.86197 0.84554 0.81855 1.90600 1.32044 1.87202 1.40102 1.20489 1.03290 0.96136 0.95818 1.21024 1.00071 0.99031 0.92770 1.21328 0.96434 0.92524 1.00967 1.18404 0.98724 0.96972 0.91000 1.21429 0.96424 0.92317 1.01942 1.21363 0.98763 1.00485 0.92111 1.21243 0.97713 0.96183 0.97845 1.21089 0.98374 0.95423 0.98878 1.18502 0.99940 0.95442 0.95386 1.18745 0.96263 0.93070 0.83027 1.84615 1.51667 1.72607 1.22015 0.91716 0.85451 0.87144 0.72892 0.83435 0.80277 0.81535 0.82030 0.83127 0.85878 0.74697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.65 9.25 21.67 0.20 -46.45 16 2 C 0.01 0.28 4.82 84.94 0.41 0.69 16 3 Si 0.99 42.21 29.60 68.60 2.03 44.24 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.35 -20.12 9.10 84.09 0.77 -19.36 16 8 H 0.08 4.61 7.54 -2.91 -0.02 4.59 16 9 N -0.43 -22.65 2.15 -643.56 -1.38 -24.03 16 10 C 0.13 5.69 4.93 85.63 0.42 6.11 16 11 C 0.49 21.50 6.16 71.23 0.44 21.94 16 12 O -0.53 -27.58 15.96 21.99 0.35 -27.23 16 13 O -0.52 -17.65 13.42 -51.44 -0.69 -18.34 16 14 C 0.50 26.95 6.47 86.60 0.56 27.51 16 15 O -0.61 -38.94 16.50 -0.62 -0.01 -38.95 16 16 C -0.15 -6.68 4.84 -20.02 -0.10 -6.78 16 17 C -0.11 -3.61 7.71 22.28 0.17 -3.44 16 18 C -0.10 -2.35 9.72 22.30 0.22 -2.13 16 19 C -0.05 -1.34 5.75 -21.26 -0.12 -1.46 16 20 C -0.10 -1.86 9.75 22.33 0.22 -1.64 16 21 C -0.11 -1.75 9.95 22.05 0.22 -1.53 16 22 C -0.11 -2.21 9.95 22.05 0.22 -1.99 16 23 C -0.12 -3.32 9.56 22.33 0.21 -3.11 16 24 C -0.09 -3.05 5.75 -21.23 -0.12 -3.17 16 25 C 0.14 5.65 6.71 23.21 0.16 5.80 16 26 O -0.50 -22.14 11.89 -83.94 -1.00 -23.14 16 27 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 28 H 0.13 4.43 4.09 -2.39 -0.01 4.42 16 29 H 0.11 4.78 7.15 -2.39 -0.02 4.76 16 30 H 0.41 10.60 9.10 -74.06 -0.67 9.92 16 31 H 0.15 4.21 6.56 -2.91 -0.02 4.19 16 32 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 34 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.12 3.42 7.61 -2.91 -0.02 3.40 16 37 H 0.40 15.79 9.06 -74.06 -0.67 15.12 16 Total: -1.00 -84.11 322.91 2.99 -81.12 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: -0.18 Total: 35.34 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 3.67 Total: 17.45 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -1.18 Total: -70.48 kcal Atomic # 8 Polarization: -106.32 SS G_CDS: -1.35 Total: -107.66 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -84.11 2.99 -81.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739086486.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.767 kcal (2) G-P(sol) polarization free energy of solvation -84.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds