Wall clock time and date at job start Tue Mar 31 2020 11:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86798 * 119.99871 * 2 1 4 4 H 1.48500 * 109.47168 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47219 * 300.00343 * 3 2 1 6 6 H 1.48501 * 109.47140 * 60.00022 * 3 2 1 7 7 C 1.38753 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00024 * 179.97438 * 7 2 1 9 9 O 1.34923 * 120.00378 * 0.02562 * 7 2 1 10 10 C 1.34304 * 117.00320 * 180.02562 * 9 7 2 11 11 O 1.21212 * 120.00025 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99990 * 179.97438 * 10 9 7 13 13 O 1.42905 * 109.47268 * 179.97438 * 12 10 9 14 14 C 1.35969 * 117.00320 * 180.02562 * 13 12 10 15 15 C 1.38704 * 119.99905 * 179.97438 * 14 13 12 16 16 C 1.38121 * 120.00125 * 180.02562 * 15 14 13 17 17 C 1.38714 * 120.00216 * 359.97438 * 16 15 14 18 18 O 1.35966 * 120.00802 * 180.02562 * 17 16 15 19 19 C 1.35661 * 118.00063 * 76.89643 * 18 17 16 20 20 C 1.38941 * 119.68909 * 175.15143 * 19 18 17 21 21 C 1.38371 * 119.11369 * 179.79255 * 20 19 18 22 22 C 1.38836 * 118.48597 * 0.47528 * 21 20 19 23 23 C 1.38054 * 119.28966 * 359.50426 * 22 21 20 24 24 N 1.31956 * 120.83734 * 0.27324 * 23 22 21 25 25 C 1.38730 * 119.99338 * 0.27214 * 17 16 15 26 26 C 1.38116 * 119.99288 * 359.47287 * 25 17 16 27 27 H 0.96996 * 120.00204 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47363 * 60.00031 * 12 10 9 29 29 H 1.09001 * 109.46982 * 299.99441 * 12 10 9 30 30 H 1.08004 * 119.99916 * 0.02562 * 15 14 13 31 31 H 1.08007 * 119.99825 * 179.97438 * 16 15 14 32 32 H 1.08008 * 120.44146 * 0.02562 * 20 19 18 33 33 H 1.08001 * 120.76067 * 180.23274 * 21 20 19 34 34 H 1.07996 * 120.35307 * 179.77859 * 22 21 20 35 35 H 1.08001 * 119.58105 * 180.25357 * 23 22 21 36 36 H 1.07996 * 119.99961 * 179.70439 * 25 17 16 37 37 H 1.08007 * 119.99576 * 180.27917 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8896 2.3965 -1.2124 6 1 1.8896 2.3964 1.2125 7 6 2.0082 -1.2016 -0.0005 8 1 3.0882 -1.2017 -0.0010 9 8 1.3336 -2.3701 -0.0016 10 6 2.0651 -3.4965 -0.0015 11 8 3.2756 -3.4331 -0.0010 12 6 1.3810 -4.8392 -0.0021 13 8 2.3651 -5.8754 -0.0025 14 6 1.9120 -7.1573 -0.0036 15 6 2.8133 -8.2115 -0.0045 16 6 2.3530 -9.5138 -0.0062 17 6 0.9893 -9.7674 -0.0063 18 8 0.5360 -11.0493 -0.0073 19 6 0.5798 -11.7413 1.1587 20 6 0.0336 -13.0172 1.2226 21 6 0.0887 -13.7141 2.4168 22 6 0.6823 -13.1032 3.5132 23 6 1.2050 -11.8327 3.3775 24 7 1.1417 -11.1948 2.2241 25 6 0.0878 -8.7129 -0.0104 26 6 0.5483 -7.4108 -0.0035 27 1 -0.4850 0.8400 -0.0004 28 1 0.7585 -4.9296 -0.8923 29 1 0.7579 -4.9299 0.8877 30 1 3.8752 -8.0141 -0.0041 31 1 3.0550 -10.3346 -0.0074 32 1 -0.4245 -13.4607 0.3508 33 1 -0.3242 -14.7090 2.4953 34 1 0.7384 -13.6182 4.4608 35 1 1.6715 -11.3546 4.2262 36 1 -0.9740 -8.9103 -0.0153 37 1 -0.1535 -6.5899 -0.0022 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746930549.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:34 Heat of formation + Delta-G solvation = -69.592222 kcal Electronic energy + Delta-G solvation = -23970.094734 eV Core-core repulsion = 20065.802558 eV Total energy + Delta-G solvation = -3904.292176 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.25144 -40.12224 -39.14374 -38.53017 -36.56590 -35.08310 -32.81556 -32.22469 -31.34898 -31.04687 -29.50301 -28.05781 -25.22459 -24.25280 -23.74645 -23.03592 -21.90722 -20.32690 -19.07568 -18.27336 -17.72952 -17.49145 -16.90130 -16.35970 -16.13252 -16.06443 -15.33983 -15.14659 -14.84218 -14.62164 -14.33498 -14.23481 -14.21732 -13.57110 -13.53284 -13.31746 -12.72394 -12.55392 -12.39614 -12.23564 -11.95336 -11.62493 -11.29154 -10.87853 -10.85280 -10.43275 -10.42614 -10.28831 -9.91342 -9.88853 -9.12946 -9.09199 -8.91527 -8.64616 -8.10952 -6.47731 -4.16176 0.79564 0.91071 1.10756 1.23578 2.79579 2.91155 3.05128 3.19012 3.27706 3.40063 3.45048 3.75205 4.00711 4.02218 4.48974 4.54354 4.66220 4.72309 4.76289 4.82002 4.87071 5.03870 5.09086 5.27418 5.32757 5.41521 5.48334 5.50303 5.58302 5.78851 5.83120 5.90907 6.16704 6.23490 6.29764 6.44607 6.58049 7.20955 7.33284 7.44881 7.61468 7.87425 8.61483 9.00790 9.72954 10.70041 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.034732 B = 0.002073 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.983520 B =13506.192725 C =13569.907189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.042 3.958 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.382 4.382 8 H 0.099 0.901 9 O -0.209 6.209 10 C 0.398 3.602 11 O -0.534 6.534 12 C 0.078 3.922 13 O -0.287 6.287 14 C 0.146 3.854 15 C -0.139 4.139 16 C -0.069 4.069 17 C 0.043 3.957 18 O -0.244 6.244 19 C 0.316 3.684 20 C -0.189 4.189 21 C -0.044 4.044 22 C -0.212 4.212 23 C 0.140 3.860 24 N -0.525 5.525 25 C -0.073 4.073 26 C -0.200 4.200 27 H 0.270 0.730 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.160 0.840 36 H 0.131 0.869 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.492 -26.317 4.115 26.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.162 4.162 3 Si 0.770 3.230 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.458 4.458 8 H 0.116 0.884 9 O -0.117 6.117 10 C 0.243 3.757 11 O -0.430 6.430 12 C 0.001 3.999 13 O -0.199 6.199 14 C 0.100 3.900 15 C -0.158 4.158 16 C -0.088 4.088 17 C 0.001 3.999 18 O -0.150 6.150 19 C 0.139 3.861 20 C -0.210 4.210 21 C -0.069 4.069 22 C -0.233 4.233 23 C -0.016 4.016 24 N -0.247 5.247 25 C -0.091 4.091 26 C -0.219 4.219 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.157 0.843 31 H 0.148 0.852 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.177 0.823 36 H 0.148 0.852 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.907 -25.277 3.777 25.629 hybrid contribution -0.191 0.037 0.193 0.274 sum -2.098 -25.240 3.970 25.636 Atomic orbital electron populations 1.69997 1.06014 1.27783 1.46295 1.25366 0.95890 0.98878 0.96044 0.85562 0.79485 0.79738 0.78167 1.18847 1.20093 1.20089 1.21319 0.92556 0.79287 1.52626 0.88363 1.83829 1.39068 1.12977 1.75825 1.22388 0.86741 0.86515 0.80075 1.90606 1.15315 1.87675 1.49371 1.21830 0.89842 0.84095 1.04096 1.86156 1.34672 1.11502 1.87605 1.19140 0.92324 0.84344 0.94201 1.20274 1.00015 0.89600 1.05888 1.20973 0.94293 0.96372 0.97132 1.18285 0.91977 0.81607 1.08061 1.84679 1.78494 1.24076 1.27768 1.20152 0.91376 0.89351 0.85270 1.21080 1.05741 0.93708 1.00437 1.21415 0.94651 0.99423 0.91431 1.22036 1.03435 0.97439 1.00341 1.22514 0.93977 0.91414 0.93698 1.67427 1.19330 1.37839 1.00107 1.20887 0.99648 0.91025 0.97561 1.21206 0.94602 0.97597 1.08458 0.91983 0.88739 0.88760 0.84323 0.85234 0.84012 0.84117 0.84504 0.82302 0.85150 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.96 13.67 55.48 0.76 -24.21 16 2 C 0.04 1.18 5.49 -17.53 -0.10 1.09 16 3 Si 0.95 21.14 29.55 -169.99 -5.02 16.11 16 4 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.38 -11.24 9.65 30.92 0.30 -10.94 16 8 H 0.10 2.92 6.86 -52.49 -0.36 2.56 16 9 O -0.21 -5.92 9.75 -20.69 -0.20 -6.12 16 10 C 0.40 9.93 7.98 36.00 0.29 10.21 16 11 O -0.53 -14.91 15.74 -25.78 -0.41 -15.32 16 12 C 0.08 1.43 5.33 36.00 0.19 1.62 16 13 O -0.29 -5.34 9.67 -39.56 -0.38 -5.72 16 14 C 0.15 2.25 6.69 -39.24 -0.26 1.99 16 15 C -0.14 -1.93 9.98 -39.45 -0.39 -2.32 16 16 C -0.07 -0.88 9.56 -39.45 -0.38 -1.25 16 17 C 0.04 0.56 5.16 -39.22 -0.20 0.35 16 18 O -0.24 -3.04 9.96 -3.09 -0.03 -3.07 16 19 C 0.32 3.57 7.41 -17.10 -0.13 3.44 16 20 C -0.19 -1.58 10.04 -39.27 -0.39 -1.98 16 21 C -0.04 -0.28 10.17 -39.31 -0.40 -0.68 16 22 C -0.21 -1.38 10.11 -39.43 -0.40 -1.78 16 23 C 0.14 1.21 11.18 -17.57 -0.20 1.01 16 24 N -0.52 -6.13 9.06 -13.32 -0.12 -6.25 16 25 C -0.07 -0.91 9.98 -39.44 -0.39 -1.31 16 26 C -0.20 -2.68 9.03 -39.45 -0.36 -3.04 16 27 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.09 1.49 7.66 -51.93 -0.40 1.10 16 29 H 0.09 1.50 7.66 -51.93 -0.40 1.11 16 30 H 0.14 1.78 8.06 -52.48 -0.42 1.35 16 31 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 32 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 34 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.14 1.66 6.29 -52.48 -0.33 1.33 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -35.42 339.64 -6.69 -42.10 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -3.58 Total: 0.93 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -2.82 Total: -3.58 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.64 Total: -30.46 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -1.02 Total: -30.23 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.42 -6.69 -42.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746930549.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.487 kcal (2) G-P(sol) polarization free energy of solvation -35.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds